mRNA_H-elongata_contig14617.3146.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE) HSP 1 Score: 380 bits (976), Expect = 8.970e-125 Identity = 185/255 (72.55%), Postives = 213/255 (83.53%), Query Frame = 1
Query: 1 NAIVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFD----YAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 753
N I +++TG YYL S+IHIRNGATLEIDG G+ C TLL+A + ITG+DSLNIRAHGGNLV+RDTKIFSWDI GTYDTN +GR Y+SAITEFITGR+ DLC D G DGYSTG+AK+ MGVARMDIYDSEL YLG+ SESYGI YKARGLCKTL NVDIFDDDQDF YAVYGDI S++H+N+FGHYSYGHQGG+W +N V+DN+GYGFDPHDDSDHL I+GN+V+ NG+HGIIASKRCTD+T
Sbjct: 82 NVISETYTGVYYLDSNIHIRNGATLEIDGT--GALACETLLMAGNDDITGSDSLNIRAHGGNLVVRDTKIFSWDITTGTYDTNTGNGRPYLSAITEFITGRDEDLCPSDTQAGEDGYSTGQAKEQMGVARMDIYDSELAYLGYSESESYGISYKARGLCKTLENVDIFDDDQDFPVYGAYAVYGDIYRSKIHNNWFGHYSYGHQGGKWIDNDVYDNVGYGFDPHDDSDHLEIRGNKVWGNGYHGIIASKRCTDIT 334
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: A0A6H5JYM5_9PHAE (MEP15 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYM5_9PHAE) HSP 1 Score: 290 bits (742), Expect = 1.800e-92 Identity = 147/238 (61.76%), Postives = 172/238 (72.27%), Query Frame = 1
Query: 13 DSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGII 726
D++TGTYYL S + I NGATL IDG C TLLLAS+S+ I AHGGNL IR TKIFSWD++ YDT+ DGR+Y+SA+TE ITGR D C DD S G+AK+DMG A MDI+ SE+GYLG+ SE+YGI YKARGLCK +N+DIFDDD + V GDI +S+LHHN+FGHYS+GH GG+W N VHDN GYGFDPHDDSD L I GNEVYNNGWHGII
Sbjct: 96 DTYTGTYYLESDVFITNGATLSIDGSESEENECETLLLASNSSTFN----RITAHGGNLDIRYTKIFSWDLKNEDYDTDPSDGRSYLSAVTEKITGRTKDTCPDDSSS-----SNGQAKEDMGNANMDIHRSEIGYLGYDGSEAYGISYKARGLCKDNSNLDIFDDDNGLNVGVTGDIYDSDLHHNWFGHYSWGHDGGKWQYNTVHDNYGYGFDPHDDSDKLKIVGNEVYNNGWHGII 324
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FWK3_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK3_ECTSI) HSP 1 Score: 286 bits (732), Expect = 1.930e-91 Identity = 146/237 (61.60%), Postives = 168/237 (70.89%), Query Frame = 1
Query: 13 DSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGI 723
D++TGTYYL S + I NGATL IDG C +LLLAS+S+ I AHGGNL IR TKIFSWD+E YDT DGR+Y+SA+TE ITGR D C DD S G+AK DMG A MDI+ SE+GYLG+ SE+YGI YKARGLCK +N+DIFDDD + V GDI S+LHHN+FGHYS+GH GG+W N VHDN GYGFDPHDDSD L I GNEVYNNGWHGI
Sbjct: 129 DTYTGTYYLESDVFITNGATLSIDGSESEKNECESLLLASNSSTFN----RITAHGGNLDIRYTKIFSWDLENEDYDTEPSDGRSYLSAVTEKITGRTKDTCPDDSSS-----SNGQAKKDMGNANMDIHRSEIGYLGYDGSEAYGISYKARGLCKDHSNLDIFDDDNGLNVGVTGDIYRSDLHHNWFGHYSWGHDGGKWQYNTVHDNYGYGFDPHDDSDKLRIIGNEVYNNGWHGI 356
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 228 bits (581), Expect = 2.750e-69 Identity = 120/246 (48.78%), Postives = 157/246 (63.82%), Query Frame = 1
Query: 16 SWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 753
S TGT+ LT +++ +G TLE+ G G LL+++ T +N+RAHGG+L TK+FSWD + D + DGR+YISAI+E IT E + C G AK+ MG ARMDI SE+GYLG++ SESYG+ +K RG C+ +N ++FDD VYG++ +S++HH FG Y+YGHQ G W N +HDN GYGFDPHDDSD L I NEVYNNG+HGIIASKRC V+
Sbjct: 98 SATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETF-----INLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITD-EDETCE------------GNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDD-----VNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVS 320
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 230 bits (586), Expect = 5.750e-69 Identity = 120/249 (48.19%), Postives = 159/249 (63.86%), Query Frame = 1
Query: 7 IVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 753
I DS TGT+ LT + + +G TL++ G G LL++ T +N+RAHGG+L TK+F+WD D + +DGR+Y+SA++E IT + CN G AK++MG ARMDI DSE+GYLG++ SESYG+ +K RG C +N D+F+D VYG+I +S++HHN FG Y+YGHQ G W N +HDN GYGFDPHDDSD L I NEVY+NG+HGIIASKRC V+
Sbjct: 92 ISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTF-----INLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDGRSYVSAVSEVITD-DSQTCN------------GRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFED-----VNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCNGVS 317
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 226 bits (577), Expect = 1.550e-67 Identity = 119/246 (48.37%), Postives = 157/246 (63.82%), Query Frame = 1
Query: 16 SWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 753
S TGT+ LT +++ +G TL++ G G LL+++ T +N+RAHGG+L TK+FSWD + D + DGR+YISAI+E IT E + C G AK+ MG ARMDI SE+GYLG++ SESYG+ +K RG C+ +N ++FDD VYG++ +S++HH FG Y+YGHQ G W N +HDN GYGFDPHDDSD L I NEVYNNG+HGIIASKRC V+
Sbjct: 98 SATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETF-----INLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITD-EDETCE------------GNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDD-----VNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVS 320
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 224 bits (571), Expect = 2.740e-67 Identity = 117/243 (48.15%), Postives = 152/243 (62.55%), Query Frame = 1
Query: 22 TGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDV 750
TG + LT+ + + GATL G+ +G G C L + S S G+D IR HGGNL DT + SWD++ DGR++I ++E +TG + N+ MG RMDI DSE+GYLG+ ASE+YGI +K RG C L+N D+FDD VYGD+ S++HH Y+G YS+GHQGG WTNN++HDN YGFDPHDDSD+L+I GN+VYNN HGIIASKRC +V
Sbjct: 50 TGKWLLTADLFVTGGATLYCRGKGVG-GNCAELRIRSTS---GSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTCAINN-----------------MGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDD-----VNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNV 266
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 223 bits (567), Expect = 5.180e-66 Identity = 118/249 (47.39%), Postives = 158/249 (63.45%), Query Frame = 1
Query: 7 IVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 753
+ ++ TGT+ LT +++ +G TL++ G G LL++ T +N+RAHGG+L TK+FSWD + D + DGR+YISA++E +T E + C G AK+ MG ARMDI +SE+GYLG+ SESYG+ +K RG CK +N +IFDD VYG++ +S++HH FG Y+YGHQ G W N +HDN GYGFDPHDDSD L I NEVYNNG+HGIIASKRC V+
Sbjct: 99 VSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETY-----INLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTD-EDETCE------------GNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDD-----VNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVS 324
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FZF8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF8_ECTSI) HSP 1 Score: 222 bits (566), Expect = 2.050e-65 Identity = 119/231 (51.52%), Postives = 152/231 (65.80%), Query Frame = 1
Query: 7 IVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEV 699
I D+ TG++YL S ++I G+ L + G G G C LLLAS +N+RAHGG L++ T + SWD+ AGT D N +DGR+Y+SAI+E IT + C+ G AK+DMG ARMDI DSE+ +LGWY SESYGI YK RG CK L+N ++FD +V GDI S++H NYFGHYSYGHQGG W++N +H NIGYGFDPHDDSD++ I NEV
Sbjct: 111 ISDTVTGSWYLESTLYITEGSRLVVQGLSKG-GDCDHLLLASSPE----KFINLRAHGGELMLDGTHVESWDLAAGTVDENNEDGRSYLSAISEVITD-PAETCD------------GTAKNDMGEARMDIIDSEVNHLGWYDSESYGIAYKVRGFCKDLSNPELFDS-----VSVTGDILGSDIHDNYFGHYSYGHQGGNWSHNKMHHNIGYGFDPHDDSDYITIHNNEV 318
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA) HSP 1 Score: 220 bits (561), Expect = 2.980e-65 Identity = 119/245 (48.57%), Postives = 156/245 (63.67%), Query Frame = 1
Query: 7 IVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRC 741
+ S TGT+ LT +++ +G TL++ G+ G G L L S T D +N+RAHGG+L TK+F+WD T+ GR+YISA++E IT D + DG AK +MG ARMDI DSE+ YLG++ SESYG+ +K RGLC+ L+N+++FD VYG+I +S++HHNYFG Y+YGH+ G W N +H N YGFDPHDDSD L I NEVYNNG HGIIASKRC
Sbjct: 92 VSSSITGTWLLTESLYVEDGITLQVHGKSAG-GKADELRLLS----TSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDDSKGRSYISAVSEVIT---------DSKQKCDG----RAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDA-----VNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTEYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRC 313 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14617.3146.1 >prot_H-elongata_contig14617.3146.1 ID=prot_H-elongata_contig14617.3146.1|Name=mRNA_H-elongata_contig14617.3146.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=267bp NAIVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGback to top mRNA from alignment at H-elongata_contig14617:1704..4592+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14617.3146.1 ID=mRNA_H-elongata_contig14617.3146.1|Name=mRNA_H-elongata_contig14617.3146.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2889bp|location=Sequence derived from alignment at H-elongata_contig14617:1704..4592+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14617:1704..4592+ >mRNA_H-elongata_contig14617.3146.1 ID=mRNA_H-elongata_contig14617.3146.1|Name=mRNA_H-elongata_contig14617.3146.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1602bp|location=Sequence derived from alignment at H-elongata_contig14617:1704..4592+ (Himanthalia elongata Himel1 dioecious)back to top |