mRNA_H-elongata_contig103752.314.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103752.314.1
Unique NamemRNA_H-elongata_contig103752.314.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig103752.314.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 2.400e-5
Identity = 21/37 (56.76%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   34 VPRINWFSNPDVDHLNKPTGQDDANCARAIEDNMVKL 144
            VP++N+FSNP+V +LNKPTG   A+ AR IE++MV +
Sbjct:  544 VPQVNYFSNPEVTYLNKPTGTATADNARCIEESMVAV 580
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BLAST of mRNA_H-elongata_contig103752.314.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 4.500e-5
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   34 VPRINWFSNPDVDHLNKPTGQDDANCARAIEDNMVKL 144
            VPR+N+FSNP+V +LNK TG   A+ AR IED+MV +
Sbjct:  364 VPRVNYFSNPNVTYLNKSTGTAAADNARCIEDSMVAV 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103752.314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JF50_9PHAE2.400e-556.76LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JRC1_9PHAE4.500e-559.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103752contigH-elongata_contig103752:297..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size132
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.3185782-CDS-H-elongata_contig103752:296..4281622929572.3185782-CDS-H-elongata_contig103752:296..428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103752 297..428 -
1691679075.612705-CDS-H-elongata_contig103752:296..4281691679075.612705-CDS-H-elongata_contig103752:296..428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103752 297..428 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.3338978-UTR-H-elongata_contig103752:428..4401622929572.3338978-UTR-H-elongata_contig103752:428..440Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103752 429..440 -
1691679075.6194947-UTR-H-elongata_contig103752:428..4401691679075.6194947-UTR-H-elongata_contig103752:428..440Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103752 429..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103752.314.1prot_H-elongata_contig103752.314.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103752 297..428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103752.314.1

>prot_H-elongata_contig103752.314.1 ID=prot_H-elongata_contig103752.314.1|Name=mRNA_H-elongata_contig103752.314.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MAHTCNNVPRINWFSNPDVDHLNKPTGQDDANCARAIEDNMVKL
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mRNA from alignment at H-elongata_contig103752:297..440-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103752.314.1 ID=mRNA_H-elongata_contig103752.314.1|Name=mRNA_H-elongata_contig103752.314.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig103752:297..440- (Himanthalia elongata Himel1 dioecious)
TACCACACTATCATGGCGCATACGTGCAATAATGTGCCCCGCATCAACTG
GTTCTCCAACCCTGACGTCGACCACTTGAATAAACCTACTGGCCAAGATG
ATGCGAACTGCGCCCGTGCTATTGAAGATAACATGGTAAAGTTA
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Coding sequence (CDS) from alignment at H-elongata_contig103752:297..440-

>mRNA_H-elongata_contig103752.314.1 ID=mRNA_H-elongata_contig103752.314.1|Name=mRNA_H-elongata_contig103752.314.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig103752:297..440- (Himanthalia elongata Himel1 dioecious)
ATGGCGCATACGTGCAATAATGTGCCCCGCATCAACTGGTTCTCCAACCC
TGACGTCGACCACTTGAATAAACCTACTGGCCAAGATGATGCGAACTGCG
CCCGTGCTATTGAAGATAACATGGTAAAGTTAATGGCGCATACGTGCAAT
AATGTGCCCCGCATCAACTGGTTCTCCAACCCTGACGTCGACCACTTGAA
TAAACCTACTGGCCAAGATGATGCGAACTGCGCCCGTGCTATTGAAGATA
ACATGGTAAAGTTA
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