mRNA_H-elongata_contig1456.3118.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1456.3118.1
Unique NamemRNA_H-elongata_contig1456.3118.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1456.3118.1 vs. uniprot
Match: A0A6H5KFL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL4_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.700e-35
Identity = 71/110 (64.55%), Postives = 86/110 (78.18%), Query Frame = 1 
Query:    1 RKHLEPEWAVVDLLELVEVDLISKLRG-----QRASRATLDAIRLLPIADAGDLFVNYAARGNISVILRYFDEAGLSIAHTHTTLKYQALHAAVEFGHLDSARLLVAMGA 315
            R H+EPEWA V++L+ +E +L  +  G     QR+S+  LDAIRLLP  +AGDLFV  AARG++ V+L YF+E GL I H+HTTLKYQALHAAVEFGHLDSARLLVAMGA
Sbjct:  122 RHHMEPEWAAVEILDCIEEELTPRREGKQQQLQRSSQMVLDAIRLLPAPEAGDLFVTCAARGHVGVLLLYFEE-GLPIDHSHTTLKYQALHAAVEFGHLDSARLLVAMGA 230
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BLAST of mRNA_H-elongata_contig1456.3118.1 vs. uniprot
Match: D7FQ05_ECTSI (Ankyrin repeat domain 16 isoform 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ05_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.280e-34
Identity = 70/110 (63.64%), Postives = 86/110 (78.18%), Query Frame = 1 
Query:    1 RKHLEPEWAVVDLLELVEVDLISKLRG-----QRASRATLDAIRLLPIADAGDLFVNYAARGNISVILRYFDEAGLSIAHTHTTLKYQALHAAVEFGHLDSARLLVAMGA 315
            R H+EPEWA V+LL+ +E +L  +  G     QR+S+  LDAIR+LP  +AGD+FV  AARG++ V+L YF+E GL I H+HTTLKYQALHAAVEFGHLDSARLLVAMGA
Sbjct:  163 RHHIEPEWAAVELLDCIEEELTPRREGEQQQLQRSSQMMLDAIRVLPAPEAGDVFVTCAARGHVGVVLFYFEE-GLPIDHSHTTLKYQALHAAVEFGHLDSARLLVAMGA 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1456.3118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFL4_9PHAE2.700e-3564.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ05_ECTSI1.280e-3463.64Ankyrin repeat domain 16 isoform 2 n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1456contigH-elongata_contig1456:12547..13142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_007960.1
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929866.5575168-CDS-H-elongata_contig1456:12548..126581622929866.5575168-CDS-H-elongata_contig1456:12548..12658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1456 12549..12658 -
1691679187.859284-CDS-H-elongata_contig1456:12548..126581691679187.859284-CDS-H-elongata_contig1456:12548..12658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1456 12549..12658 -
1622929866.5723085-CDS-H-elongata_contig1456:12937..131421622929866.5723085-CDS-H-elongata_contig1456:12937..13142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1456 12938..13142 -
1691679187.878011-CDS-H-elongata_contig1456:12937..131421691679187.878011-CDS-H-elongata_contig1456:12937..13142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1456 12938..13142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1456.3118.1prot_H-elongata_contig1456.3118.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1456 12549..13142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1456.3118.1

>prot_H-elongata_contig1456.3118.1 ID=prot_H-elongata_contig1456.3118.1|Name=mRNA_H-elongata_contig1456.3118.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
RKHLEPEWAVVDLLELVEVDLISKLRGQRASRATLDAIRLLPIADAGDLF
VNYAARGNISVILRYFDEAGLSIAHTHTTLKYQALHAAVEFGHLDSARLL
VAMGA
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mRNA from alignment at H-elongata_contig1456:12547..13142-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1456.3118.1 ID=mRNA_H-elongata_contig1456.3118.1|Name=mRNA_H-elongata_contig1456.3118.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=596bp|location=Sequence derived from alignment at H-elongata_contig1456:12547..13142- (Himanthalia elongata Himel1 dioecious)
AGGAAACACCTTGAACCGGAATGGGCAGTCGTTGATCTTTTGGAGCTTGT
CGAGGTGGACCTCATTTCAAAACTCCGAGGTCAACGTGCTTCTCGGGCAA
CATTGGATGCGATTCGATTGCTGCCGATCGCTGATGCGGGAGATCTTTTC
GTGAACTATGCCGCGAGGGGGAATATCAGCGTCATCTTACGTTACTTCGA
TGAAGGTGCGATGGAGTCTACATCGACAGGTGCTGATTGATGATTGATGA
TTGATATCGTTGTCGGTAGAATGTGCTGTAAAAATCCGATTCGAGTCGAT
TCCTTTATCACTTTAGTTTCGCTCGTGGGATACGTTCATATATGTATATG
TACATGGAAATCCGCTTCAAGCACGAGCGCGAAATATATTATGTTGCTGT
GCCAGGTCTCAGCGCTTCCGATGTTACACCTGCATGCTTCTCAGCAACAC
GTGCTCAACCTCTCACGAAACCCTTGCCTCGTAGCAGGACTGTCCATTGC
CCACACACACACGACGCTCAAATACCAGGCCTTACATGCAGCTGTCGAGT
TTGGACATCTTGACAGCGCCCGCCTCCTGGTGGCCATGGGGGCCAA
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Coding sequence (CDS) from alignment at H-elongata_contig1456:12547..13142-

>mRNA_H-elongata_contig1456.3118.1 ID=mRNA_H-elongata_contig1456.3118.1|Name=mRNA_H-elongata_contig1456.3118.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig1456:12547..13142- (Himanthalia elongata Himel1 dioecious)
AGGAAACACCTTGAACCGGAATGGGCAGTCGTTGATCTTTTGGAGCTTGT
CGAGGTGGACCTCATTTCAAAACTCCGAGGTCAACGTGCTTCTCGGGCAA
CATTGGATGCGATTCGATTGCTGCCGATCGCTGATGCGGGAGATCTTTTC
GTGAACTATGCCGCGAGGGGGAATATCAGCGTCATCTTACGTTACTTCGA
TGAAGAGGAAACACCTTGAACCGGAATGGGCAGTCGTTGATCTTTTGGAG
CTTGTCGAGGTGGACCTCATTTCAAAACTCCGAGGTCAACGTGCTTCTCG
GGCAACATTGGATGCGATTCGATTGCTGCCGATCGCTGATGCGGGAGATC
TTTTCGTGAACTATGCCGCGAGGGGGAATATCAGCGTCATCTTACGTTAC
TTCGATGAAGCAGGACTGTCCATTGCCCACACACACACGACGCTCAAATA
CCAGGCCTTACATGCAGCTGTCGAGTTTGGACATCTTGACAGCGCCCGCC
TCCTGGTGGCCATGGGGGCCCAGGACTGTCCATTGCCCACACACACACGA
CGCTCAAATACCAGGCCTTACATGCAGCTGTCGAGTTTGGACATCTTGAC
AGCGCCCGCCTCCTGGTGGCCATGGGGGCC
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