prot_H-elongata_contig145225.3095.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig145225.3095.1
Unique Nameprot_H-elongata_contig145225.3095.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length47
Homology
BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: D7G978_ECTSI (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G978_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.150e-15
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 0
Query:    2 PVYHSKQRGGNAQICCGCAILPLQTTVRGPAPLAQPG-ELVVQE 44
            P YHSKQ   NAQ+CCGCAILPL TTVRGPAPLAQPG E +V+E
Sbjct:    7 PAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEE 50          
BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: A0A835YQX6_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX6_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.600e-6
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 0
Query:    2 PVYHSKQRGGNAQICCGCAILPLQTTVRGPAPLAQPGE 39
            P YHSK +G +    CGCAILPL+T +RGPAP+   G+
Sbjct:    2 PAYHSKLQGTSVGDACGCAILPLRTNLRGPAPILPKGD 39          
BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: A0A7S2RMH4_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMH4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.840e-6
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 0
Query:    2 PVYHSKQRGGNAQICCGCAILPLQTTVRGPAP 33
            PVYHSK  G   Q  CGCA+LPL+T VRGPAP
Sbjct:   12 PVYHSKFTGQEGQEMCGCALLPLKTRVRGPAP 43          
BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: R1DRS6_EMIHU (Actin-related protein 2/3 complex subunit 3 n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DRS6_EMIHU)

HSP 1 Score: 50.8 bits (120), Expect = 2.220e-6
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 0
Query:    3 VYHSKQRGGNAQICCGCAILPLQTTVRGPAPLAQPGE 39
            VYHS   G   ++ CGCAILPL+T++RGPA  A  GE
Sbjct:    3 VYHSSLNGTETEVACGCAILPLKTSIRGPAESAAEGE 39          
BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: A0A8J2WEU3_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WEU3_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.450e-6
Identity = 21/34 (61.76%), Postives = 24/34 (70.59%), Query Frame = 0
Query:    2 PVYHSKQRGGNAQICCGCAILPLQTTVRGPAPLA 35
            P YHSK  G  A   CGCA+LPL+T +RGPAP A
Sbjct:    2 PAYHSKIDGAGADEACGCALLPLKTKLRGPAPAA 35          
BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: A0A0M0JZA5_9EUKA (Actin-related protein 2 3 complex subunit 3 (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZA5_9EUKA)

HSP 1 Score: 50.1 bits (118), Expect = 8.950e-6
Identity = 22/36 (61.11%), Postives = 25/36 (69.44%), Query Frame = 0
Query:    3 VYHSKQRGGNAQICCGCAILPLQTTVRGPAPLAQPG 38
            VYHS +    AQ  CGC+ILP+ TT RGPAPLA  G
Sbjct:    2 VYHSAKNDEEAQQACGCSILPIVTTTRGPAPLAPEG 37          
BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: A0A7S0Q1V8_9EUKA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q1V8_9EUKA)

HSP 1 Score: 48.9 bits (115), Expect = 1.240e-5
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 0
Query:    3 VYHSKQRG-GNAQICCGCAILPLQTTVRGPAPLAQPGE 39
            VYHS      +A++ CGC+ILP++TT RGPAP+A  GE
Sbjct:    6 VYHSSLNDIADAEVVCGCSILPIKTTTRGPAPVASEGE 43          
BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: A0A7S1U2P7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2P7_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.400e-5
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 0
Query:    2 PVYHSKQRGGNAQICCGCAILPLQTTVRGPAPLAQPGE 39
            P YHSK    +A   CGCA+LPL+T+ RGPAP++  GE
Sbjct:   43 PAYHSKFAELDADEACGCALLPLRTSKRGPAPVSPDGE 80          
BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: F0Y6P7_AURAN (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6P7_AURAN)

HSP 1 Score: 47.8 bits (112), Expect = 3.310e-5
Identity = 22/39 (56.41%), Postives = 24/39 (61.54%), Query Frame = 0
Query:    2 PVYHSKQRGGNA-QICCGCAILPLQTTVRGPAPLAQPGE 39
            P YHSK  G       CGCA+LPL+T  RGPAPL   GE
Sbjct:    2 PAYHSKYAGAETGDEACGCALLPLKTKTRGPAPLMADGE 40          
BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Match: D8RWB1_SELML (Actin-related protein 2/3 complex subunit 3 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RWB1_SELML)

HSP 1 Score: 47.0 bits (110), Expect = 6.450e-5
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 0
Query:    3 VYHS--KQRGGNAQICCGCAILPLQTTVRGPAPLAQPGE 39
            VYHS  K   G  Q  CGC +LPL+T ++GPAPLA PG+
Sbjct:    2 VYHSSFKDESGAGQ-ACGCPLLPLRTPIKGPAPLADPGQ 39          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145225.3095.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G978_ECTSI2.150e-1577.27Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A835YQX6_9STRA1.600e-655.26Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S2RMH4_9STRA1.840e-668.75Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
R1DRS6_EMIHU2.220e-656.76Actin-related protein 2/3 complex subunit 3 n=3 Ta... [more]
A0A8J2WEU3_9STRA4.450e-661.76Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A0M0JZA5_9EUKA8.950e-661.11Actin-related protein 2 3 complex subunit 3 (Fragm... [more]
A0A7S0Q1V8_9EUKA1.240e-555.26Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S1U2P7_9STRA2.400e-555.26Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0Y6P7_AURAN3.310e-556.41Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
D8RWB1_SELML6.450e-556.41Actin-related protein 2/3 complex subunit 3 n=2 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036753Actin-related protein 2/3 complex subunit 3 superfamilyGENE3D1.10.1760.10coord: 1..45
e-value: 1.2E-7
score: 33.7
IPR036753Actin-related protein 2/3 complex subunit 3 superfamilySUPERFAMILY69060Arp2/3 complex 21 kDa subunit ARPC3coord: 2..43
IPR007204Actin-related protein 2/3 complex subunit 3PFAMPF04062P21-Arccoord: 2..37
e-value: 5.0E-6
score: 26.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145225contigH-elongata_contig145225:87..227 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145225.3095.1mRNA_H-elongata_contig145225.3095.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig145225 87..227 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig145225.3095.1 ID=prot_H-elongata_contig145225.3095.1|Name=mRNA_H-elongata_contig145225.3095.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
QPVYHSKQRGGNAQICCGCAILPLQTTVRGPAPLAQPGELVVQEFD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036753ARPC3_sf
IPR007204ARPC3