mRNA_H-elongata_contig14517.3093.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14517.3093.1
Unique NamemRNA_H-elongata_contig14517.3093.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig14517.3093.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.840e-21
Identity = 40/88 (45.45%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    7 MWHRRLGHLHAQSLDIIRKRYGTGITFEGAVSACDICAVGKAQHFAHLKTANQNVNRPSRLCYEDLMGPFTHVTIGGYKCVRKITDKY 270
            +WHRR+GH+H +SLDI+RK  G G+ + G +SACD+CAVG ++   H K A+ + +RP +L   DLMGPF+   +GG+  ++K  D++
Sbjct:  268 LWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQH 355
[Close]
BLAST of mRNA_H-elongata_contig14517.3093.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.660e-15
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:   10 WHRRLGHLHAQSLDIIRKRYGTGITFEGAVSACDICAVGKAQHFAHLKTANQNVNRPSRLCYEDLMGPFT---HVTIGGYKCVRKITDKYT 273
            WHRRLGHL+A+SL+I+RK  GTG+ +  ++S C +C +GK +   H K + + ++RP +L   D MGP     +   G +    KITD YT
Sbjct:  309 WHRRLGHLNARSLEILRKDTGTGVDYRDSLSPCGVCQIGKHKQSPHPKQSTRELSRPGQLVVIDSMGPVNPPAYYKGGSFPYACKITDDYT 399
[Close]
BLAST of mRNA_H-elongata_contig14517.3093.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.350e-15
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   10 WHRRLGHLHAQSLDIIRKRYGTGITFEGAVSACDICAVGKAQHFAHLKTANQNVNRPSRLCYEDLMGPFTHVTI---GGYKCVRKITDKYT 273
            WHRRLGHL+A+SLDI+RK  GTG+ +  ++S C +C + K +   H K + + ++RP +L   D MGP         G +    KITD YT
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYT 135
[Close]
BLAST of mRNA_H-elongata_contig14517.3093.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.720e-15
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:   10 WHRRLGHLHAQSLDIIRKRYGTGITFEGAVSACDICAVGKAQHFAHLKTANQNVNRPSRLCYEDLMGPFTHVTI---GGYKCVRKITDKYT 273
            WHRRLGHL+A+SLDI+RK  GTG+ +  ++S C +C + K +   H K + + ++RP +L     MGP         G +  VRKITD YT
Sbjct:  334 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIGNMGPVNPPAKYKGGSFPYVRKITDDYT 424
[Close]
BLAST of mRNA_H-elongata_contig14517.3093.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 6.890e-15
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   10 WHRRLGHLHAQSLDIIRKRYGTGITFEGAVSACDICAVGKAQHFAHLKTANQNVNRPSRLCYEDLMGPFTHVTI---GGYKCVRKITDKYT 273
            WHRRLGHL+A+SLDI+RK  GTG+ +  ++S C +C + K +   H K + + ++RP +L   D MGP         G +    KITD YT
Sbjct:  421 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYT 511
[Close]
BLAST of mRNA_H-elongata_contig14517.3093.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.270e-14
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   10 WHRRLGHLHAQSLDIIRKRYGTGITFEGAVSACDICAVGKAQHFAHLKTANQNVNRPSRLCYEDLMGPFTHVTI---GGYKCVRKITDKYT 273
            WHRRLGHL+A+SLDI+RK  GTG+ +  ++S C +C + K +   H K + + ++RP +L   D MGP         G +    KITD YT
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYT 135
[Close]
BLAST of mRNA_H-elongata_contig14517.3093.1 vs. uniprot
Match: A0A6H5JWA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA3_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.280e-14
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   10 WHRRLGHLHAQSLDIIRKRYGTGITFEGAVSACDICAVGKAQHFAHLKTANQNVNRPSRLCYEDLMGPFTHVTI---GGYKCVRKITDKYT 273
            WHRRLGHL+A+SLDI+RK  GTG+ +  ++S C +C + K +   HLK + + ++RP +L     MGP         G +    KITD YT
Sbjct:  327 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHLKQSTRELSRPGQLVVIGNMGPVNPPAKNKGGSFPYACKITDDYT 417
[Close]
BLAST of mRNA_H-elongata_contig14517.3093.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.290e-14
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   10 WHRRLGHLHAQSLDIIRKRYGTGITFEGAVSACDICAVGKAQHFAHLKTANQNVNRPSRLCYEDLMGPFTHVTI---GGYKCVRKITDKYT 273
            WHRRLGHL+A+SLDI+RK  GTG+ +  ++S C +C + K +   H K + + ++RP +L   D MGP         G +    KITD YT
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYT 135
[Close]
BLAST of mRNA_H-elongata_contig14517.3093.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.300e-14
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   10 WHRRLGHLHAQSLDIIRKRYGTGITFEGAVSACDICAVGKAQHFAHLKTANQNVNRPSRLCYEDLMGPFTHVTI---GGYKCVRKITDKYT 273
            WHRRLGHL+A+SLDI+RK  GTG+ +  ++S C +C + K +   H K + + ++RP +L   D MGP         G +    KITD YT
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYT 135
[Close]
BLAST of mRNA_H-elongata_contig14517.3093.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.310e-14
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   10 WHRRLGHLHAQSLDIIRKRYGTGITFEGAVSACDICAVGKAQHFAHLKTANQNVNRPSRLCYEDLMGPFT---HVTIGGYKCVRKITDKYT 273
            WHRRLGHL+A+SLDI+RK  GTG+ F  ++S C +C + K +   H K + + ++RP +L   D +GP         G +    KITD YT
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDFRDSLSPCGVCQIAKYKQSPHPKQSTRELSRPGQLVVIDNVGPVNPPAKYNGGSFPYACKITDDYT 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14517.3093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE1.840e-2145.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP59_9PHAE1.660e-1541.76CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KZ34_9PHAE2.350e-1541.76Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KMG5_9PHAE2.720e-1542.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT84_9PHAE6.890e-1541.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCM0_9PHAE1.270e-1441.76Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5JWA3_9PHAE1.280e-1441.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K500_9PHAE1.290e-1441.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE1.300e-1441.76Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JRJ1_9PHAE1.310e-1441.76Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14517contigH-elongata_contig14517:33..305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.2241488-CDS-H-elongata_contig14517:32..2991622929861.2241488-CDS-H-elongata_contig14517:32..299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14517 33..299 -
1691679186.7255607-CDS-H-elongata_contig14517:32..2991691679186.7255607-CDS-H-elongata_contig14517:32..299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14517 33..299 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.239711-UTR-H-elongata_contig14517:299..3051622929861.239711-UTR-H-elongata_contig14517:299..305Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14517 300..305 -
1691679186.7334516-UTR-H-elongata_contig14517:299..3051691679186.7334516-UTR-H-elongata_contig14517:299..305Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14517 300..305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14517.3093.1prot_H-elongata_contig14517.3093.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14517 33..299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14517.3093.1

>prot_H-elongata_contig14517.3093.1 ID=prot_H-elongata_contig14517.3093.1|Name=mRNA_H-elongata_contig14517.3093.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MWHRRLGHLHAQSLDIIRKRYGTGITFEGAVSACDICAVGKAQHFAHLKT
ANQNVNRPSRLCYEDLMGPFTHVTIGGYKCVRKITDKYT
back to top

mRNA from alignment at H-elongata_contig14517:33..305-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14517.3093.1 ID=mRNA_H-elongata_contig14517.3093.1|Name=mRNA_H-elongata_contig14517.3093.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at H-elongata_contig14517:33..305- (Himanthalia elongata Himel1 dioecious)
GGCCAGATGTGGCACCGACGGCTGGGTCATCTCCATGCGCAGAGCCTGGA
CATTATACGCAAGCGATACGGCACTGGCATCACCTTCGAGGGGGCCGTCT
CGGCTTGCGACATTTGCGCCGTGGGGAAGGCTCAACATTTTGCTCATCTC
AAGACGGCCAATCAGAATGTCAACCGGCCTTCTCGGCTGTGCTACGAAGA
CCTGATGGGGCCCTTCACGCATGTGACCATAGGCGGCTACAAGTGCGTCA
GAAAAATAACCGACAAGTACACA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14517:33..305-

>mRNA_H-elongata_contig14517.3093.1 ID=mRNA_H-elongata_contig14517.3093.1|Name=mRNA_H-elongata_contig14517.3093.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig14517:33..305- (Himanthalia elongata Himel1 dioecious)
ATGTGGCACCGACGGCTGGGTCATCTCCATGCGCAGAGCCTGGACATTAT
ACGCAAGCGATACGGCACTGGCATCACCTTCGAGGGGGCCGTCTCGGCTT
GCGACATTTGCGCCGTGGGGAAGGCTCAACATTTTGCTCATCTCAAGACG
GCCAATCAGAATGTCAACCGGCCTTCTCGGCTGTGCTACGAAGACCTGAT
GGGGCCCTTCACGCATGTGACCATAGGCGGCTACAAGTGCGTCAGAAAAA
TAACCGACAAGTACACAATGTGGCACCGACGGCTGGGTCATCTCCATGCG
CAGAGCCTGGACATTATACGCAAGCGATACGGCACTGGCATCACCTTCGA
GGGGGCCGTCTCGGCTTGCGACATTTGCGCCGTGGGGAAGGCTCAACATT
TTGCTCATCTCAAGACGGCCAATCAGAATGTCAACCGGCCTTCTCGGCTG
TGCTACGAAGACCTGATGGGGCCCTTCACGCATGTGACCATAGGCGGCTA
CAAGTGCGTCAGAAAAATAACCGACAAGTACACA
back to top