mRNA_H-elongata_contig14464.3066.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14464.3066.1
Unique NamemRNA_H-elongata_contig14464.3066.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14464.3066.1 vs. uniprot
Match: D8LS95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS95_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 4.310e-116
Identity = 171/240 (71.25%), Postives = 200/240 (83.33%), Query Frame = 2
Query:    2 IGSGLRPRESYHLARKIFHFTTIMTFAVAYSAKLPRWEFSRCMALMDVFVFMTELARLRIESVNRVVFGIFRPFMRAHELRKFSGIMYCLAGLGLTSALFPKHIALLGMVQLAVGDPTAALCGHATRSVRWSRLRSGKGLLGALGCAVVLTLANFVTLYKAVFEEAPPPVERILLAAALIATWTAAVEASVPSPQKTLRYDGFPLAFDDNATLPVLGALGAAMVFRLLGLEDCQLRPWVF 721
            +G+GLRPRESYH++RK FHF+TIM FAV YSAKLP+ +F+R MA +D  V   ELARLR++ VNRV+F +F  FMRAHEL+KFSGIMYCLAGLG+TSA+FPKHIALLGM+QLA+GDP AALCGHATRSV WSR+ +GKGLLGALGCA  LTLAN   L KA FE   P + RI+LA  +IA W AAVE SVPSPQKTL  +GFPLAFDDNA LPVLGA+GAA+VFR+LGL  C+LRPW+F
Sbjct:   63 LGAGLRPRESYHISRKTFHFSTIMAFAVVYSAKLPQRDFARGMAALDACVLAGELARLRVDVVNRVLFRVFGAFMRAHELKKFSGIMYCLAGLGITSAMFPKHIALLGMLQLALGDPVAALCGHATRSVGWSRVGTGKGLLGALGCATALTLANSFVLAKARFESGAPTLRRIVLAGGMIAAWAAAVEVSVPSPQKTLPCEGFPLAFDDNAALPVLGAMGAAVVFRVLGLGSCELRPWLF 302          
BLAST of mRNA_H-elongata_contig14464.3066.1 vs. uniprot
Match: A0A5J4YXT9_PORPP (CTP-dependent diacylglycerol kinase 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXT9_PORPP)

HSP 1 Score: 146 bits (369), Expect = 2.140e-36
Identity = 93/228 (40.79%), Postives = 125/228 (54.82%), Query Frame = 2
Query:    5 GSGLRPRESYHLARKIFHFTTIMTFAVAYSAKLPRWEFSRCMALMDVFVFMTELARLRIESVNRVVFGIFRPFMRAHELRKFSGIMYCLAGLGLTSALFPKHIALLGMVQLAVGDPTAALCGHATRSVRWSRLRSGKGLLGALGCAVVLTLANFVTLYKAVFEEAPPPVERILLAAALIATWTAAVEASVPSPQKTLRYDGFPLAFDDNATLPVLGALGAAMVFRLLG 688
            G+ L  RESYH ARK+FHF T    A+AY   L + +F     ++   V +TE ARL+  ++N+VV   F PFMRAHE  KFSG+ Y + G    +AL  K  A+LG++ LA  DP AAL G  T+S  W+RL++GK +LG     +V     F    ++        +  + LA   IA+  A  E  VPSPQ TL Y  FPL  DDN  +PV+ A  A   F  +G
Sbjct:   71 GNRLPTRESYHPARKLFHFLTGYMIALAYHLFLSKAQFCVISTVVAGSVLVTEAARLQSPAINKVVQMAFGPFMRAHETSKFSGMFYYMFGCATAAALVSKPAAILGILLLAALDPIAALFGTFTKSQTWARLKNGKSVLGFFFAFLVALNLVFRCAMRSPDGLGMDALVFLKLACT-IASCGALTELIVPSPQLTLPYAQFPLGIDDNFLIPVVAACVAEASFAFVG 297          
BLAST of mRNA_H-elongata_contig14464.3066.1 vs. uniprot
Match: A0A6U5JUM7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5JUM7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.170e-24
Identity = 84/254 (33.07%), Postives = 123/254 (48.43%), Query Frame = 2
Query:   14 LRPRESYHLARKIFHFTTIMTFAVAYSAKLPRWEFSRCMALMDVFVFMTELARLR--IESVNRVVFGIFRPFMRAHELR-KFSGIMYCLAGLGLTSALFPKHIALLGMVQLAVGDPTAALCGHATRSVRWSRLRSG-------KGLLGALGCAVVLTLANFVTLYKAVFEEAPPPVERILLAAALIATWTAA-VEASVPSPQKTLRYDGF-----PLAFDDNATLPVLGALGAAMVFRLLGLE-DCQLRPWVFV 724
            L+ R S +L RK+ H    + F +  +  +PR  F   M ++       EL R R     +N  +  I    +R HE+  KF+G +Y   G+ +TSALF K  A LG+ QLA+ DP+A+  G +TR V WSR+ SG       KG LG LG A+     N+  L  A F +  P  ++ LL A+L      A  + +VP+P   +    F     P   DDN  +P+     A  +F+ L    D  L P+VF+
Sbjct:  156 LKSRNSMNLRRKVLHAGFGLFFGIL-NHVVPRKYFLGAMTILSTGTLCMELLRYRPGFSWMNDALHTILGGSLRRHEMDGKFTGSLYFFVGVTVTSALFSKAAATLGIFQLAIADPSASYFGRSTRHVYWSRIESGLGGFGRNKGFLGFLGGALACVPLNYQVLRMAQFGKIVPGGQQALLTASLALGMAGAFADLAVPTPALVMPEKVFGVRVPPFHVDDNFVVPIFAGFAATHIFKALSCPTDFTLAPFVFI 408          
BLAST of mRNA_H-elongata_contig14464.3066.1 vs. uniprot
Match: A0A7S4AI34_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AI34_9STRA)

HSP 1 Score: 103 bits (256), Expect = 6.470e-20
Identity = 90/269 (33.46%), Postives = 128/269 (47.58%), Query Frame = 2
Query:    2 IGSGLRPRESYHLARKIFHFTTIMTFAVAYSAKLPRWEFSRCMALMDVFVFMTELARLR--IESVNRVVFGIFRPFMRAHELR-KFSGIMYCLAGLGLTSALFPKHIALLGMVQLAVGDPTAALCGHATRSVRWSRLRSG-------KGLLGALGCAVVLTLANFVTLYKAVFEE---------APPPVERILLAAALIATWTAAVEASVPSPQKTL--RYDGF---PLAFDDNATLPVLGALGAAMVFRL----LGLEDCQLRPWVFV 724
            I   L+ R + +  RK  H    M FA  +   +PR  F   M  +     + EL R R   + +N+ +  +    +R +E+  KF+G +Y  +G+ LTS LFPK  A LG+VQLA+ DP+A+  G ATR V WSR+ +G       KG+LG LG AV     N+  L  A+ +          A P V  I LA  +     A  +  VP+P  TL  R  G    P   DDN  +PVL   G A V+ L    +G  +  L  ++ V
Sbjct:  211 IAKQLKNRNAANKRRKFMHAAWGMLFASLHHF-IPRNRFLPGMTTLTTLTLIMELLRYRKGFDWMNKSLHFVLGKALRKNEMEGKFTGSLYYFSGVTLTSYLFPKSCATLGIVQLAIADPSASYFGRATRHVYWSRINNGFFGLGRNKGILGCLGGAVSCVPLNYRLLSLALVKNTGTAAARTIAKPTVLAISLALGMAG---ALADLMVPTPSLTLPKRVCGVRVPPFHLDDNIVVPVLS--GWACVYILAAASIGRNELVLAKYLVV 473          
BLAST of mRNA_H-elongata_contig14464.3066.1 vs. uniprot
Match: K0R4U8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R4U8_THAOC)

HSP 1 Score: 99.4 bits (246), Expect = 8.160e-20
Identity = 78/249 (31.33%), Postives = 120/249 (48.19%), Query Frame = 2
Query:    2 IGSGLRPRESYHLARKIFHFTTIMTFAVAYSAKLPRWEFSRCMALMDVFVFMTELARLR--IESVNRVVFGIFRPFMRAHELR-KFSGIMYCLAGLGLTSALFPKHIALLGMVQLAVGDPTAALCGHATRSVRWSRLRSG-------KGLLGALGCAVVLTLANFVTLYKAVF--EEAPPPVERILLAAALIATWTAAVEASVPSP-----QKTLRYDGFPLAFDDNATLPVLGALGAAMVFRLLGLED 697
            I   LR R + +L RK  H +  + FA   +  +PR  F   MA++     + EL R R     +N V+       +R HE+  KF+G  Y  AG+  T+ L+P+  A LG++QLA+ DP+A+  G  TR+V WSR+ +G       KGLLG LG A+     NF     A +  +  P     +L A+ L+    A  + +VP+P     +K L     P   DDN  +P+        +F ++G + 
Sbjct:    3 IAKKLRNRNATNLTRKFTHASFGIFFACL-NQIIPRARFVPGMAVVTGTSLLMELLRYRSGFGWINGVLHFFLGKALRKHEMEGKFTGSFYYFAGVTATAYLYPQTAATLGILQLALADPSASYFGKMTRNVYWSRIENGLLGFGRNKGLLGFLGGALFCLPFNFRIFKMARWGAKGVPGGDSALLTASLLLGLAGAFADLAVPTPVLTMPKKVLGVPVPPFHVDDNFVVPIFSGWACVKIFDMMGWDS 250          
BLAST of mRNA_H-elongata_contig14464.3066.1 vs. uniprot
Match: A0A7S4EJ41_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EJ41_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.150e-19
Identity = 90/269 (33.46%), Postives = 128/269 (47.58%), Query Frame = 2
Query:    2 IGSGLRPRESYHLARKIFHFTTIMTFAVAYSAKLPRWEFSRCMALMDVFVFMTELARLR--IESVNRVVFGIFRPFMRAHELR-KFSGIMYCLAGLGLTSALFPKHIALLGMVQLAVGDPTAALCGHATRSVRWSRLRSG-------KGLLGALGCAVVLTLANFVTLYKAVFEE---------APPPVERILLAAALIATWTAAVEASVPSPQKTL--RYDGF---PLAFDDNATLPVLGALGAAMVFRL----LGLEDCQLRPWVFV 724
            I   L+ R + +  RK  H    M FA  +   +PR  F   M  +     + EL R R   + +N+ +  +    +R +E+  KF+G +Y  +G+ LTS LFPK  A LG+VQLA+ DP+A+  G ATR V WSR+ +G       KG+LG LG AV     N+  L  A+ +          A P V  I LA  +     A  +  VP+P  TL  R  G    P   DDN  +PVL   G A V+ L    +G  +  L  ++ V
Sbjct:  331 IAKQLKNRNAANKRRKFMHAAWGMLFASLHHF-IPRNRFLPGMTTLTTLTLIMELLRYRKGFDWMNKSLHFVLGKALRKNEMEGKFTGSLYYFSGVTLTSYLFPKSCATLGIVQLAIADPSASYFGRATRHVYWSRINNGFFGLGRNKGILGCLGGAVSCVPLNYRLLSLALVKNTGTAAARTIAKPTVLAISLALGMAG---ALADLMVPTPSLTLPKRVCGVRVPPFHLDDNIVVPVLS--GWACVYILAAASIGRNELVLAKYLVV 593          
BLAST of mRNA_H-elongata_contig14464.3066.1 vs. uniprot
Match: A0A1E7F8F4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F8F4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.580e-17
Identity = 81/265 (30.57%), Postives = 122/265 (46.04%), Query Frame = 2
Query:    2 IGSGLRPRESYHLARKIFHFTTIMTFAVAYSAKLPRWEFSRCMALMDVFVFMTELARLR--IESVNRVVFGIFRPFMRAHELR-KFSGIMYCLAGLGLTSALFPKHIALLGMVQLAVGDPTAALCGHATRSVRWSRLRSG--------KGLLGALGCAV--------VLTLA-NFVTLYKAVFEEAPPPVER-------ILLAAALIATWTAAVEASVPSPQKTLRYDGF-----PLAFDDNATLPVLGALGAAMVFR-LLGLED 697
            I   L+ R + +  RK  HF   + FA + +  LPR  F   M+ +       EL R R   + +N  +  +F   +R  E+  KF+G +Y  AG+  TS L+P+  A LG++QLA+ DPTA+  G ATR V WSR+  G        KG+LG LG  +        +L+LA N V    ++                 IL+A+ ++    A  +  VP+P  TL          P   DDN  +PVL       +F+ +LG+  
Sbjct:    4 IAKKLKNRNATNKRRKFMHFAWGILFA-SLNHFLPRSTFLPIMSTLTAITLFMELMRYREGFQWINTSMHYLFGKSLRKSEMDGKFTGSLYYFAGVTATSYLYPQSCATLGIIQLAIADPTASYFGRATRHVYWSRINKGFAGGLGRNKGILGFLGGGLACVPINYRILSLACNTVVRSSSIGASGAGASTALAISNPTILIASLVLGLAGAFADLIVPTPALTLPKTICGKTVPPFHLDDNFIVPVLSGYACTQIFKYVLGVPS 267          
BLAST of mRNA_H-elongata_contig14464.3066.1 vs. uniprot
Match: UPI001989E47C (Uncharacterized protein n=1 Tax=Bdellovibrionales bacterium TaxID=2053517 RepID=UPI001989E47C)

HSP 1 Score: 90.9 bits (224), Expect = 3.240e-17
Identity = 63/225 (28.00%), Postives = 101/225 (44.89%), Query Frame = 2
Query:   14 LRPRESYHLARKIFHFTTIMTFAVAYSAKLPRWEFSRCMALMDVFVFMTELARLRIESVNRVVFGIFRPFMRAHELRKFSGIMYCLAGLGLTSALFPKHIALLGMVQLAVGDPTAALCGHATRSVRWSRLRSGKGLLGALGCAVVLTLANFVTLYKAVFEEAPPPVERILLAAALIATWTAAVEASVPSPQKTLRYDGFPLAFDDNATLPVLGALGAAMVFRLLG 688
            LR R   HLARK++H    +  AV Y    P+      +     F    E ARLR   +N     +  P MR HE+ K SG  + +A + L+ A+FPK IA+L ++ LA+GDP +++ G         R  +GK L+G      + ++  FV L              +L    L+ + + A+   +      +     PL  DDN ++P++  L   + F + G
Sbjct:   13 LRLRNDLHLARKVWHCGMGVFMAVFYGIGFPKVVCVLLLIAALSFFLTAEYARLRFPKLNAFAIRVMGPVMRKHEVSKMSGTPFYIASVLLSVAIFPKPIAILSILFLAIGDPVSSIFGITYGDRIGMRFANGKSLIGTAAGMGICSVITFVYL--------------MLTGVPLVPSSSIALAGGLAGGGAEM----IPLDIDDNFSIPLVSGLALWIAFLVFG 219          
BLAST of mRNA_H-elongata_contig14464.3066.1 vs. uniprot
Match: A0A7S2UMT5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UMT5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.460e-16
Identity = 74/246 (30.08%), Postives = 114/246 (46.34%), Query Frame = 2
Query:    2 IGSGLRPRESYHLARKIFHFTTIMTFAVAYSAKLPRWEFSRCMALMDVFVFMTELARLR--IESVNRVVFGIFRPFMRAHELR-KFSGIMYCLAGLGLTSALFPKHIALLGMVQLAVGDPTAALCGHATRSVRWSRLRSG-------KGLLGALGCAVVLTLANFVTLYKAVFEEAPPPVERILLAAA--LIATWTAAVEASVPSP-----QKTLRYDGFPLAFDDNATLPVLGALGAAMVFRLLG 688
            I   L+ R   + +RK+ H    + FA A +  LPR +F   M  +     + EL R R     +N ++       +R HE+  KF+G  Y   G+  +  L+PK+ A +G++QLA+ DP+A+  G  TR V WSR+ +G       KG+LG LG A+     N+     A F     P  R  LA    ++    A  + +VP+P     +K L     PL  DDN  +P+  A     +  + G
Sbjct:  116 IAKKLKNRNHVNFSRKVTHAAFGIFFA-ALNHVLPREKFLPWMTFVTGSTLLMELLRYRKGFGWINSILHFFLGSSLRKHEMEGKFTGSFYYFLGVTASVYLYPKNAATMGIIQLALADPSASYFGRQTRDVYWSRIENGLGGFGRNKGILGFLGGALFCFPFNYRIFSLAKFGAGGIPGGRASLAGVSLVLGMSGALADLAVPTPALTMPKKVLGVRVPPLHVDDNFVVPLFSAYCYTKILPMFG 360          
BLAST of mRNA_H-elongata_contig14464.3066.1 vs. uniprot
Match: A0A4Q6C3G7_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6C3G7_9PROT)

HSP 1 Score: 83.6 bits (205), Expect = 1.940e-14
Identity = 70/232 (30.17%), Postives = 107/232 (46.12%), Query Frame = 2
Query:   14 LRPRESYHLARKIFHFTTIMTFAVAYSAKLPRWEFSRCMALMDVFVFMTELARLRIESVNRVVFGIFRPFMRAHELRKFSGIMYCLAGLGLTSALFPKHIALLGMVQLAVGDPTAALCGHAT--RSVRWSRLRSGKGLLGALGCAVVLTLANFVTLYKAVFEEAPPPVERILLAAALIATWTAAVEASVPSPQKTLRYDGFPLAFDDNATLPVLGALGAAMVFRLLGLEDCQ 703
            L+ R   HLARKI+H    M    +Y   L R +    +A   +F    EL RL+   +N  +   +   MR+ E+ + SGI Y +    ++  +FPK IA+L +V LAVGDP A+L G     +SVR+S   +GK L+G +   +  +L    +L   +FE         +L       W  +V          L     P+  DDN  +PV+      +VF LL ++  Q
Sbjct:   30 LKLRNDLHLARKIWHCGMGMIMMASYFFWLTRAQAMMWLATAFLFNLGMELGRLKSPELNAHIMKTWGGIMRSCEVNRVSGIPYYIGATLISVTIFPKPIAILSVVCLAVGDPIASLFGITLGDKSVRFS---NGKSLIGTMAGVIACSLVIAASLL--LFESYG------MLRLNRDHFWMLSVIGGFAGGAAELT----PMEIDDNFAIPVISGFVLWLVFILLQIQIIQ 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14464.3066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LS95_ECTSI4.310e-11671.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5J4YXT9_PORPP2.140e-3640.79CTP-dependent diacylglycerol kinase 1 n=1 Tax=Porp... [more]
A0A6U5JUM7_9STRA2.170e-2433.07Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4AI34_9STRA6.470e-2033.46Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
K0R4U8_THAOC8.160e-2031.33Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4EJ41_9STRA1.150e-1933.46Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1E7F8F4_9STRA1.580e-1730.57Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
UPI001989E47C3.240e-1728.00Uncharacterized protein n=1 Tax=Bdellovibrionales ... [more]
A0A7S2UMT5_9STRA1.460e-1630.08Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A4Q6C3G7_9PROT1.940e-1430.17Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14464contigH-elongata_contig14464:386..2720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.0
Seed ortholog evalue2.2e-82
Seed eggNOG ortholog2880.D8LS95
EggNOG OGs2E1KA@1,2S8X1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_004350.1
Exons4
Model size1524
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14464.3066.1prot_H-elongata_contig14464.3066.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14464 1183..2650 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929858.3969228-UTR-H-elongata_contig14464:385..11821622929858.3969228-UTR-H-elongata_contig14464:385..1182Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14464 386..1182 -
1691679185.8419056-UTR-H-elongata_contig14464:385..11821691679185.8419056-UTR-H-elongata_contig14464:385..1182Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14464 386..1182 -
1622929858.4959383-UTR-H-elongata_contig14464:2650..27201622929858.4959383-UTR-H-elongata_contig14464:2650..2720Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14464 2651..2720 -
1691679185.8936975-UTR-H-elongata_contig14464:2650..27201691679185.8936975-UTR-H-elongata_contig14464:2650..2720Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14464 2651..2720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929858.4133556-CDS-H-elongata_contig14464:1182..15191622929858.4133556-CDS-H-elongata_contig14464:1182..1519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14464 1183..1519 -
1691679185.85218-CDS-H-elongata_contig14464:1182..15191691679185.85218-CDS-H-elongata_contig14464:1182..1519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14464 1183..1519 -
1622929858.428407-CDS-H-elongata_contig14464:1849..19781622929858.428407-CDS-H-elongata_contig14464:1849..1978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14464 1850..1978 -
1691679185.8605213-CDS-H-elongata_contig14464:1849..19781691679185.8605213-CDS-H-elongata_contig14464:1849..1978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14464 1850..1978 -
1622929858.4445379-CDS-H-elongata_contig14464:2176..22301622929858.4445379-CDS-H-elongata_contig14464:2176..2230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14464 2177..2230 -
1691679185.8692997-CDS-H-elongata_contig14464:2176..22301691679185.8692997-CDS-H-elongata_contig14464:2176..2230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14464 2177..2230 -
1622929858.4795914-CDS-H-elongata_contig14464:2513..26501622929858.4795914-CDS-H-elongata_contig14464:2513..2650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14464 2514..2650 -
1691679185.8786278-CDS-H-elongata_contig14464:2513..26501691679185.8786278-CDS-H-elongata_contig14464:2513..2650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14464 2514..2650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14464.3066.1

>prot_H-elongata_contig14464.3066.1 ID=prot_H-elongata_contig14464.3066.1|Name=mRNA_H-elongata_contig14464.3066.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp
MTFAVAYSAKLPRWEFSRCMALMDVFVFMTELARLRIESVNRVVFGIFRP
FMRAHELRKFSGIMYCLAGLGLTSALFPKHIALLGMVQLAVGDPTAALCG
HATRSVRWSRLRSGKGLLGALGCAVVLTLANFVTLYKAVFEEAPPPVERI
LLAAALIATWTAAVEASVPSPQKTLRYDGFPLAFDDNATLPVLGALGAAM
VFRLLGLEDCQLRPWVFV*
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mRNA from alignment at H-elongata_contig14464:386..2720-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14464.3066.1 ID=mRNA_H-elongata_contig14464.3066.1|Name=mRNA_H-elongata_contig14464.3066.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2335bp|location=Sequence derived from alignment at H-elongata_contig14464:386..2720- (Himanthalia elongata Himel1 dioecious)
GATTGGGAGCGGACTGCGTCCACGGGAGTCGTACCATCTCGCCCGCAAGA TTTTCCATTTCACGACCATCATGACATTCGCCGTCGCGTACAGCGCCAAG CTGCCGCGGTGGGAATTTTCGCGGTGTATGGCGCTGATGGATGTCTTCGT CTTCATGACTGAGCTCGCCAGGTTACGGATCGAGTCCGTTAACAGAGTGG TTTTCGGGTGAGCCCCTGCCAGGTCTGTGTTAGAGCATTAGAGAGTATCC CGCTCGCTGTCCGCGCGTCTTTACGTCTCGCGACGACGTTTCATGACGTT TCATGCCAACTGTGGCATGGCGAGATGAGTGAATGCCAGGGCAAAGTATG TTATATTGCAGTCAGACTGTAACAGGGACGAGAAAAATTACAATCGATCA TGTTGCTTTCAGGATACCCATGCGCCGGGGAAACGCTTTGATCTGAACCG GCCGGGGGTCCCTCTCGTCGTACACACAACCGTTTTACAGGATATTCCGC CCGTTCATGCGCGCTCATGAGCTGAGGAAATTCAGTGGAATAATGTGAGA GACGCCGAGACAACCGGGTGTCTAAAATCGTACCGCCCTTGGCCTCCGAA TACGCTTTTAGTAGCTCTCTAGGCTATATACTCTAGTGGTGCTCTTTTAA AAAAATAGGCCATACGCCCGACATTCATTTGTGATGTTTAATAGATCCAT GACCGCCTGAATGCCGCATTTTGGAATACCTCGCCCGGATAGGTACTGCC TTGCTGGACTGGGCCTGACGTCTGCGCTCTTCCCGAAGCACATCGCCCTA TTGGGGATGGTGCAATTGGCAGTTGGAGACCCGACAGCTGCACTATGCGG TCACGCGACTCGTTCGGTCCGGTGCGTGTGCAGGAGGAGTGTCGTGCGTA CACTCTCCGAATCGAATTTTCAAGACAGTAGTATATTATGCATGCATGGC GTTTTAGATTAGCATGCATCAAGGGCAAGACAGAGCAGGGCAGGGCTGTA CAGGGCAGGGCAGGGCTGTAGCGCACTCTGAAAAAAGACACCGAGAGTCC TGGGCAATTGAACTTGCCGGGTTGTTTCGTCTCGTGTGCGTGCGTGAATA ATACTTCTGAGAGTTCACGCCACTCGTCGTCTAGACGCAGCCAAAACATT TTCGAGGTTCACCAATCAAAATCCTCTATGCGCGCCCTCGCGTGTCAAAA GGTGGTCTAGGCTTCGGAGTGGGAAAGGCCTCCTTGGGGCCCTGGGCTGC GCCGTCGTGCTCACGCTTGCTAACTTCGTGACACTTTACAAGGCTGTCTT CGAGGAGGCGCCGCCGCCGGTTGAACGGATCCTTCTTGCCGCGGCTTTGA TCGCCACCTGGACAGCTGCCGTAGAGGCATCGGTCCCAAGTCCACAAAAG ACCCTCCGATACGACGGTTTCCCACTGGCTTTCGACGACAACGCCACGTT GCCCGTATTGGGTGCGCTGGGTGCGGCGATGGTTTTCAGGCTTCTCGGGC TTGAGGACTGCCAGTTGCGTCCGTGGGTGTTTGTTTAATTATTTAGGTTG TAGAAGGTGCGTAAAAGGTTTTTTAAAGCGCGCATCATAGAAGAAAAATT CAAAAGTGGAAATTGACCTTCCAGAAAATGGAAATCTTGGTCGGGATGAT TTCCAAACTTTGGAAATCACGAAAGGCTTTCGAACTCCAACAGGAGGCCT AGATAAATGCTGGAGGATTTCAATCAAATCAGATTAAGTTTTTAAAGGAA AAACAAACATAAAAACTCCCATGCTCGAGAGGGTGACGAAGGATGTTGGG ACCTTGAATCGTCATTCGATGCATGCATGCGCTTTGAGGTGTTTGCATGC AAGCAAGTTCGCAGTCGAGACGAGGCCTCTGAATGATAAATGACACAATT TCGGTGAAAATCAGGTGGAGGGGGGGGGTCGGAGTTAGGAGCTCAGGCAA TCACCAAGCCGCCTTGGACAAATATCCGCAAATTCCATCTTGATTTAGCT ATTAAAGGAAATCTTTCGCCCGCAGGATGACGTACAGTATTATAGTTAAA GTTGTCGGTTGACAAGAGTTGAATCCCTTGTCAGACACGTCAAGGACACG TCCCGATTCTGAAACTAGTATATTTCCCAAAACGACGCCTTGACGCACCC CCAAGAACCTGTCAACCGACAACTATGATTATAGTAGGCAAGTTTGCTAA TAGCTTCGTCCGATCTATCACACGTTGTAGAACTTTCAAGATTTCGACGA GACTCAAATTATATTTCTTAAAAAAAAAAGCGCCTTCCGAGAGTGAGAGT GGCCTTGGGTTTTGATTGATGGTTTTGCCGAATCG
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Coding sequence (CDS) from alignment at H-elongata_contig14464:386..2720-

>mRNA_H-elongata_contig14464.3066.1 ID=mRNA_H-elongata_contig14464.3066.1|Name=mRNA_H-elongata_contig14464.3066.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig14464:386..2720- (Himanthalia elongata Himel1 dioecious)
ATGACATTCGCCGTCGCGTACAGCGCCAAGCTGCCGCGGTGGGAATTTTC
GCGGTGTATGGCGCTGATGGATGTCTTCGTCTTCATGACTGAGCTCGCCA
GGTTACGGATCGAGTCCGTTAACAGAGTGGTTTTCGGATGACATTCGCCG
TCGCGTACAGCGCCAAGCTGCCGCGGTGGGAATTTTCGCGGTGTATGGCG
CTGATGGATGTCTTCGTCTTCATGACTGAGCTCGCCAGGTTACGGATCGA
GTCCGTTAACAGAGTGGTTTTCGGGATATTCCGCCCGTTCATGCGCGCTC
ATGAGCTGAGGAAATTCAGTGGAATAATGATATTCCGCCCGTTCATGCGC
GCTCATGAGCTGAGGAAATTCAGTGGAATAATGTACTGCCTTGCTGGACT
GGGCCTGACGTCTGCGCTCTTCCCGAAGCACATCGCCCTATTGGGGATGG
TGCAATTGGCAGTTGGAGACCCGACAGCTGCACTATGCGGTCACGCGACT
CGTTCGGTCCGGTACTGCCTTGCTGGACTGGGCCTGACGTCTGCGCTCTT
CCCGAAGCACATCGCCCTATTGGGGATGGTGCAATTGGCAGTTGGAGACC
CGACAGCTGCACTATGCGGTCACGCGACTCGTTCGGTCCGGTGGTCTAGG
CTTCGGAGTGGGAAAGGCCTCCTTGGGGCCCTGGGCTGCGCCGTCGTGCT
CACGCTTGCTAACTTCGTGACACTTTACAAGGCTGTCTTCGAGGAGGCGC
CGCCGCCGGTTGAACGGATCCTTCTTGCCGCGGCTTTGATCGCCACCTGG
ACAGCTGCCGTAGAGGCATCGGTCCCAAGTCCACAAAAGACCCTCCGATA
CGACGGTTTCCCACTGGCTTTCGACGACAACGCCACGTTGCCCGTATTGG
GTGCGCTGGGTGCGGCGATGGTTTTCAGGCTTCTCGGGCTTGAGGACTGC
CAGTTGCGTCCGTGGGTGTTTGTTTAAGTGGTCTAGGCTTCGGAGTGGGA
AAGGCCTCCTTGGGGCCCTGGGCTGCGCCGTCGTGCTCACGCTTGCTAAC
TTCGTGACACTTTACAAGGCTGTCTTCGAGGAGGCGCCGCCGCCGGTTGA
ACGGATCCTTCTTGCCGCGGCTTTGATCGCCACCTGGACAGCTGCCGTAG
AGGCATCGGTCCCAAGTCCACAAAAGACCCTCCGATACGACGGTTTCCCA
CTGGCTTTCGACGACAACGCCACGTTGCCCGTATTGGGTGCGCTGGGTGC
GGCGATGGTTTTCAGGCTTCTCGGGCTTGAGGACTGCCAGTTGCGTCCGT
GGGTGTTTGTTTAA
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