prot_H-elongata_contig14462.3063.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14462.3063.1
Unique Nameprot_H-elongata_contig14462.3063.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length346
Homology
[Close]
BLAST of mRNA_H-elongata_contig14462.3063.1 vs. uniprot
Match: D7G862_ECTSI (Pc13g00620 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G862_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 8.430e-94
Identity = 182/344 (52.91%), Postives = 238/344 (69.19%), Query Frame = 0 
Query:    3 GAKDLQTAEAAKTAQRLGEALALEGDRQRSVDFFALAVGALESLFGPGSVETIESRTDLGLALLRQGKAREASSTLDEAMWARVATQRIEG---SAGGMSRNLGGLVEALIRRGPEGDEAMELEGALAAVEKINLLAWRYFTQHWPFEGQTVMQQMIDAIEADEGGGAYSPASQDLVASAYLYNLGFLRLAVLGEYKSAAELLLRAQALRAPILGNVHSLTVQAVVSRGHALTLTGYTILAVKELTSTADALLEAGQAAAAERLARQALRAGYDPLGTHTYTHACFTQHVNMLKGWGNEARQARSNDFQTKQIAIARKAQLGIRDRGMGTASKTLGKALLAQID 343
            G++ L +  AA TAQRLGEALALEGD +R+   F  AV A E+LFG  S + +   T LGLAL RQG+  +A+STL  A+    A +  EG   S   +++ L GL ++LIRR PEG E+ EL GAL AV+ IN LA RYF Q  P +G++V+Q +   +E ++ G +   A +DLV SA L+NLGFLRLAVLGE+ SAA +L +A  LR  +LG  HSLT+QAVVSRG ALTLTG T+LAV+ELTS A+ALL AGQ  AA+RL RQ L+ GYDPLG  TY HAC+TQH NML+ WG+E   A+++ F   Q+ IA+KA+L  ++R M  A++TL  A+ AQI+
Sbjct:  106 GSEKLNSEAAALTAQRLGEALALEGDHERAASVFGRAVVASEALFGVKSTQAVACLTGLGLALFRQGQLSDAASTLGRALSVH-ALRPDEGMVTSTQDVTKTLDGLAKSLIRRPPEGGES-ELGGALLAVDHINPLAGRYFVQKLPHQGESVLQSLY--VEKEDAGSSEPSALRDLVISALLFNLGFLRLAVLGEFSSAASVLQQAIELRKAVLGEAHSLTMQAVVSRGWALTLTGDTLLAVEELTSAAEALLSAGQPHAADRLLRQGLQQGYDPLGGATYAHACYTQHSNMLRAWGSEGI-AKADAFCLNQLNIAKKARLTGKERPMKRATRTLAVAVRAQIE 444
[Close]
BLAST of mRNA_H-elongata_contig14462.3063.1 vs. uniprot
Match: A0A6H5JZA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZA8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.660e-19
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = 0 
Query:  249 DALLEAGQAAAAERLARQALRAGYDPLGTHTYTHACFTQHVNMLKGWGNEARQARSNDFQTKQIAIARKAQLGIRDRGMGTASKTLGKALLAQID 343
            DALL AGQ  AA+RL RQ L+ GYDPLG  TY HAC+TQH  ML+ WG+E   A+++ F   Q+ IA+KA+L  ++R M  A++TL  A+ AQI+
Sbjct:   17 DALLSAGQPHAADRLLRQGLQQGYDPLGGATYAHACYTQHSTMLRAWGSEGI-AKADAFCLNQLDIAKKARLTGKERPMKRATRTLAVAVRAQIE 110
[Close]
BLAST of mRNA_H-elongata_contig14462.3063.1 vs. uniprot
Match: A0A6H5JX93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX93_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.730e-7
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 0 
Query:    3 GAKDLQTAEAAKTAQRLGEALALEGDRQRSVDFFALAVGALESLFGPGSVETIESRTDLGLALLRQ 68
            G++ L +  AA TAQRLGEALALEGD +R+   F  AV A E+LFG  S + +   T LGLAL +Q
Sbjct:  106 GSEKLNSEAAALTAQRLGEALALEGDHERAASVFGRAVVASEALFGVKSTQAVACLTGLGLALFQQ 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14462.3063.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G862_ECTSI8.430e-9452.91Pc13g00620 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JZA8_9PHAE1.660e-1952.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX93_9PHAE1.730e-753.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 4..319
e-value: 2.6E-6
score: 28.9
NoneNo IPR availablePFAMPF13424TPR_12coord: 14..82
e-value: 3.2E-7
score: 30.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14462contigH-elongata_contig14462:5253..7639 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14462.3063.1mRNA_H-elongata_contig14462.3063.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14462 5253..7639 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14462.3063.1 ID=prot_H-elongata_contig14462.3063.1|Name=mRNA_H-elongata_contig14462.3063.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=346bp
QSGAKDLQTAEAAKTAQRLGEALALEGDRQRSVDFFALAVGALESLFGPG
SVETIESRTDLGLALLRQGKAREASSTLDEAMWARVATQRIEGSAGGMSR
NLGGLVEALIRRGPEGDEAMELEGALAAVEKINLLAWRYFTQHWPFEGQT
VMQQMIDAIEADEGGGAYSPASQDLVASAYLYNLGFLRLAVLGEYKSAAE
LLLRAQALRAPILGNVHSLTVQAVVSRGHALTLTGYTILAVKELTSTADA
LLEAGQAAAAERLARQALRAGYDPLGTHTYTHACFTQHVNMLKGWGNEAR
QARSNDFQTKQIAIARKAQLGIRDRGMGTASKTLGKALLAQIDVS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf