prot_H-elongata_contig144137.3033.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig144137.3033.1
Unique Nameprot_H-elongata_contig144137.3033.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length79
Homology
BLAST of mRNA_H-elongata_contig144137.3033.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.750e-11
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 0
Query:    1 ECSACGGSGCGSFG-----PQCCTSDVEALGDLCSETGEAPCLIDDDGVETETSSGSTCSNGLDGVESSNGDYCCTDDCSACGG 79
            EC  CGG GC  +G       CC S++E  G+LCS T EAPC++DD            CSNG+ G+++  G+ CC  +C  CGG
Sbjct: 2709 ECGTCGGRGCAEYGGGLGEDNCCQSEIEDFGELCSVTMEAPCVVDD-----------VCSNGIPGIQT--GNACCLAECGTCGG 2779          
BLAST of mRNA_H-elongata_contig144137.3033.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.540e-10
Identity = 35/84 (41.67%), Postives = 45/84 (53.57%), Query Frame = 0
Query:    1 ECSACGGSGCGSFG-----PQCCTSDVEALGDLCSETGEAPCLIDDDGVETETSSGSTCSNGLDGVESSNGDYCCTDDCSACGG 79
            EC  CGGSGC   G       CC S++E  G+LCS    APC++DD            CSNG+ G++S  G+ CC  +C  CGG
Sbjct: 1593 ECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDD-----------MCSNGIPGIQS--GNACCLAECGGCGG 1663          
BLAST of mRNA_H-elongata_contig144137.3033.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 7.270e-9
Identity = 36/81 (44.44%), Postives = 43/81 (53.09%), Query Frame = 0
Query:    2 CSACGGSGCGSFGP---QCCTSDVEALGDLCSETGEAPCLIDDDGVETETSSGSTCSNGLDGVESSNGDYCCTDDCSACGG 79
            C  CGG GC   G     CCTS++ A  + CSE G APC++D D          TCSNGL G E+S    CC+  C  CGG
Sbjct:  399 CGTCGGEGCSQLGEGAESCCTSNIIAAREPCSEKGAAPCIMDTD---------QTCSNGLAGFENSGA--CCSVGCGTCGG 468          
BLAST of mRNA_H-elongata_contig144137.3033.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 7.860e-5
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 0
Query:    2 CSACGGSGCGSFGPQ-------CCTSDVEALGDLCSETGEAPCLIDDDG 43
            C  C G GC +FG +       CC + ++A G LCSETG APC+ID++G
Sbjct:   44 CGRCAGEGCTAFGSENGLGADSCCGNAIKASGRLCSETGSAPCIIDEEG 92          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144137.3033.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FJ68_ECTSI3.750e-1141.67WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JG29_9PHAE4.540e-1041.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY01_ECTSI7.270e-944.44Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LRN1_ECTSI7.860e-546.94Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144137contigH-elongata_contig144137:16..493 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144137.3033.1mRNA_H-elongata_contig144137.3033.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig144137 16..495 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig144137.3033.1 ID=prot_H-elongata_contig144137.3033.1|Name=mRNA_H-elongata_contig144137.3033.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
ECSACGGSGCGSFGPQCCTSDVEALGDLCSETGEAPCLIDDDGVETETSS
GSTCSNGLDGVESSNGDYCCTDDCSACGG
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