prot_H-elongata_contig144127.3030.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig144127.3030.1
Unique Name	prot_H-elongata_contig144127.3030.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	108

Homology

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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: A0A6H5JJ47_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ47_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.540e-59
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 0

Query:    4 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 108
            GKKRLDLAGALLAGLFRQLFRKLT NVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYAS LSHLRRLNTPLGREGKQ
Sbjct:  483 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQ 587

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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.280e-57
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 0

Query:    4 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 108
            GKKRLDLAGALLAGLFRQLFRKLT NVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYAS LSHLRRLNTPLGREGKQ
Sbjct:  482 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQ 586

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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: A0A7S2W761_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W761_9STRA)

HSP 1 Score: 160 bits (406), Expect = 3.120e-46
Identity = 83/105 (79.05%), Postives = 89/105 (84.76%), Query Frame = 0

Query:    4 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 108
            GKKRLDLAG LL GLFR LFRKLT +VRK+LQ CLD+G  F +G AIKS  ITDGLKYSLATGNWGDK +A KAGVSQVLNRLTYAS+LSHLRR NTPL R GKQ
Sbjct:  208 GKKRLDLAGPLLGGLFRVLFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNWGDKGSAVKAGVSQVLNRLTYASSLSHLRRCNTPLARTGKQ 312

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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: F0YIN3_AURAN (DNA-directed RNA polymerase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIN3_AURAN)

HSP 1 Score: 162 bits (410), Expect = 3.840e-44
Identity = 82/105 (78.10%), Postives = 92/105 (87.62%), Query Frame = 0

Query:    4 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 108
            GKKRLDLAG LL GLFR LFRKLT +V  YLQ C+D+G  F + +AIKS+ ITDGL+YSLATGNWGD+K A++AGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ
Sbjct:  340 GKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDEGRDFNLASAIKSRVITDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 444

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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: A0A7S2AX64_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AX64_9STRA)

HSP 1 Score: 161 bits (407), Expect = 6.130e-44
Identity = 83/105 (79.05%), Postives = 92/105 (87.62%), Query Frame = 0

Query:    4 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 108
            GKKRLDLAG LLAGLFR LFRKLT +VRKYLQ CLD+   F V TAIKS+ ++DGLKYSLATGNWGD++  ++AGVSQVLNRL YASTLSHLRRLNTPLGREGKQ
Sbjct:  394 GKKRLDLAGPLLAGLFRLLFRKLTKDVRKYLQRCLDERKPFNVTTAIKSRTLSDGLKYSLATGNWGDRRNPSRAGVSQVLNRLAYASTLSHLRRLNTPLGREGKQ 498

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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: A0A7S2F9I8_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F9I8_9STRA)

HSP 1 Score: 161 bits (407), Expect = 9.680e-44
Identity = 83/105 (79.05%), Postives = 92/105 (87.62%), Query Frame = 0

Query:    4 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 108
            GKKRLDLAG LLAGLFR LFRKLT +VRKYLQ CLD+   F V TAIKS+ ++DGLKYSLATGNWGD++  ++AGVSQVLNRL YASTLSHLRRLNTPLGREGKQ
Sbjct:  252 GKKRLDLAGPLLAGLFRLLFRKLTKDVRKYLQRCLDERKPFNVTTAIKSRTLSDGLKYSLATGNWGDRRNPSRAGVSQVLNRLAYASTLSHLRRLNTPLGREGKQ 356

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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: F0YGN2_AURAN (DNA-directed RNA polymerase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGN2_AURAN)

HSP 1 Score: 161 bits (407), Expect = 9.780e-44
Identity = 81/105 (77.14%), Postives = 91/105 (86.67%), Query Frame = 0

Query:    4 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 108
            GKKRLDLAG LL GLFR LFRKLT +V  YLQ C+D G  F + +AIKS+ +TDGL+YSLATGNWGD+K A++AGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ
Sbjct:  437 GKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDDGRDFNLASAIKSRVVTDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 541

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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: A0A8J2SZW4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZW4_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.820e-43
Identity = 81/105 (77.14%), Postives = 91/105 (86.67%), Query Frame = 0

Query:    4 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 108
            GKKRLDLAG LL GLFR LFRKLT +V  YLQ C+D+   F + +AIKS+ ITDGL+YSLATGNWGD+K A++AGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ
Sbjct:  436 GKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDEARDFNLASAIKSRLITDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 540

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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: B8C598_THAPS (DNA-directed RNA polymerase subunit beta n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C598_THAPS)

HSP 1 Score: 157 bits (397), Expect = 2.180e-42
Identity = 81/105 (77.14%), Postives = 88/105 (83.81%), Query Frame = 0

Query:    4 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 108
            GKKRLDLAG LL GLFR LFRKLT +VRK+LQ CLD+G  F +G AIKS  I+DGLKYSLATGNWGDK   +KAGVSQVLNRLTYAS+LSHLRR NTPL R GKQ
Sbjct:  397 GKKRLDLAGPLLGGLFRVLFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHISDGLKYSLATGNWGDKGNTSKAGVSQVLNRLTYASSLSHLRRSNTPLARTGKQ 501

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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: A0A1J0I9L5_9AGAR (DNA-directed RNA polymerase (Fragment) n=4 Tax=Laccaria TaxID=29882 RepID=A0A1J0I9L5_9AGAR)

HSP 1 Score: 144 bits (362), Expect = 2.600e-42
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 0

Query:    4 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTA--TKAGVSQVLNRLTYASTLSHLRRLNTPLGREGK 107
            GKKRLDLAG LLA LFR LFRKLT +V +YLQ C++   +F +  A+K Q IT+GLKYSLATGNWGD+K +  +KAGVSQVLNR TYASTLSHLRR NTPLGREGK
Sbjct:    3 GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGK 108

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot

BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JJ47_9PHAE	1.540e-59	98.10	DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp....	[more]
D7FHZ3_ECTSI	1.280e-57	98.10	DNA-directed RNA polymerase subunit beta n=1 Tax=E...	[more]
A0A7S2W761_9STRA	3.120e-46	79.05	DNA-directed RNA polymerase (Fragment) n=1 Tax=Euc...	[more]
F0YIN3_AURAN	3.840e-44	78.10	DNA-directed RNA polymerase subunit beta n=1 Tax=A...	[more]
A0A7S2AX64_9STRA	6.130e-44	79.05	DNA-directed RNA polymerase (Fragment) n=1 Tax=Dic...	[more]
A0A7S2F9I8_9STRA	9.680e-44	79.05	DNA-directed RNA polymerase subunit beta n=1 Tax=D...	[more]
F0YGN2_AURAN	9.780e-44	77.14	DNA-directed RNA polymerase subunit beta n=1 Tax=A...	[more]
A0A8J2SZW4_9STRA	1.820e-43	77.14	DNA-directed RNA polymerase subunit beta n=1 Tax=P...	[more]
B8C598_THAPS	2.180e-42	77.14	DNA-directed RNA polymerase subunit beta n=2 Tax=B...	[more]
A0A1J0I9L5_9AGAR	2.600e-42	71.70	DNA-directed RNA polymerase (Fragment) n=4 Tax=Lac...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.1100.10		coord: 2..108 e-value: 6.4E-20 score: 73.5
None	No IPR available	PANTHER	PTHR20856:SF23		coord: 4..107
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..7
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 20..24
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 25..108
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 8..19
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 4..107
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 4..107

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig144127	contig	H-elongata_contig144127:496..1543 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig144127.3030.1	mRNA_H-elongata_contig144127.3030.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig144127 496..1543 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig144127.3030.1 ID=prot_H-elongata_contig144127.3030.1|Name=mRNA_H-elongata_contig144127.3030.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MWTGKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAI
KSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNT
PLGREGKQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015712	DNA-dir_RNA_pol_su2