mRNA_H-elongata_contig144127.3030.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144127.3030.1
Unique NamemRNA_H-elongata_contig144127.3030.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: A0A6H5JJ47_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ47_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.540e-59
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:   10 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 324
            GKKRLDLAGALLAGLFRQLFRKLT NVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYAS LSHLRRLNTPLGREGKQ
Sbjct:  483 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQ 587
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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.280e-57
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:   10 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 324
            GKKRLDLAGALLAGLFRQLFRKLT NVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYAS LSHLRRLNTPLGREGKQ
Sbjct:  482 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQ 586
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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: A0A7S2W761_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W761_9STRA)

HSP 1 Score: 160 bits (406), Expect = 3.120e-46
Identity = 83/105 (79.05%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:   10 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 324
            GKKRLDLAG LL GLFR LFRKLT +VRK+LQ CLD+G  F +G AIKS  ITDGLKYSLATGNWGDK +A KAGVSQVLNRLTYAS+LSHLRR NTPL R GKQ
Sbjct:  208 GKKRLDLAGPLLGGLFRVLFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNWGDKGSAVKAGVSQVLNRLTYASSLSHLRRCNTPLARTGKQ 312
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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: F0YIN3_AURAN (DNA-directed RNA polymerase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIN3_AURAN)

HSP 1 Score: 162 bits (410), Expect = 3.840e-44
Identity = 82/105 (78.10%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:   10 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 324
            GKKRLDLAG LL GLFR LFRKLT +V  YLQ C+D+G  F + +AIKS+ ITDGL+YSLATGNWGD+K A++AGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ
Sbjct:  340 GKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDEGRDFNLASAIKSRVITDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 444
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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: A0A7S2AX64_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AX64_9STRA)

HSP 1 Score: 161 bits (407), Expect = 6.130e-44
Identity = 83/105 (79.05%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:   10 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 324
            GKKRLDLAG LLAGLFR LFRKLT +VRKYLQ CLD+   F V TAIKS+ ++DGLKYSLATGNWGD++  ++AGVSQVLNRL YASTLSHLRRLNTPLGREGKQ
Sbjct:  394 GKKRLDLAGPLLAGLFRLLFRKLTKDVRKYLQRCLDERKPFNVTTAIKSRTLSDGLKYSLATGNWGDRRNPSRAGVSQVLNRLAYASTLSHLRRLNTPLGREGKQ 498
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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: A0A7S2F9I8_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F9I8_9STRA)

HSP 1 Score: 161 bits (407), Expect = 9.680e-44
Identity = 83/105 (79.05%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:   10 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 324
            GKKRLDLAG LLAGLFR LFRKLT +VRKYLQ CLD+   F V TAIKS+ ++DGLKYSLATGNWGD++  ++AGVSQVLNRL YASTLSHLRRLNTPLGREGKQ
Sbjct:  252 GKKRLDLAGPLLAGLFRLLFRKLTKDVRKYLQRCLDERKPFNVTTAIKSRTLSDGLKYSLATGNWGDRRNPSRAGVSQVLNRLAYASTLSHLRRLNTPLGREGKQ 356
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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: F0YGN2_AURAN (DNA-directed RNA polymerase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGN2_AURAN)

HSP 1 Score: 161 bits (407), Expect = 9.780e-44
Identity = 81/105 (77.14%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:   10 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 324
            GKKRLDLAG LL GLFR LFRKLT +V  YLQ C+D G  F + +AIKS+ +TDGL+YSLATGNWGD+K A++AGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ
Sbjct:  437 GKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDDGRDFNLASAIKSRVVTDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 541
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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: A0A8J2SZW4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZW4_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.820e-43
Identity = 81/105 (77.14%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:   10 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 324
            GKKRLDLAG LL GLFR LFRKLT +V  YLQ C+D+   F + +AIKS+ ITDGL+YSLATGNWGD+K A++AGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ
Sbjct:  436 GKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDEARDFNLASAIKSRLITDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 540
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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: B8C598_THAPS (DNA-directed RNA polymerase subunit beta n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C598_THAPS)

HSP 1 Score: 157 bits (397), Expect = 2.180e-42
Identity = 81/105 (77.14%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:   10 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQ 324
            GKKRLDLAG LL GLFR LFRKLT +VRK+LQ CLD+G  F +G AIKS  I+DGLKYSLATGNWGDK   +KAGVSQVLNRLTYAS+LSHLRR NTPL R GKQ
Sbjct:  397 GKKRLDLAGPLLGGLFRVLFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHISDGLKYSLATGNWGDKGNTSKAGVSQVLNRLTYASSLSHLRRSNTPLARTGKQ 501
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BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Match: A0A1J0I9L5_9AGAR (DNA-directed RNA polymerase (Fragment) n=4 Tax=Laccaria TaxID=29882 RepID=A0A1J0I9L5_9AGAR)

HSP 1 Score: 144 bits (362), Expect = 2.600e-42
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:   10 GKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTA--TKAGVSQVLNRLTYASTLSHLRRLNTPLGREGK 321
            GKKRLDLAG LLA LFR LFRKLT +V +YLQ C++   +F +  A+K Q IT+GLKYSLATGNWGD+K +  +KAGVSQVLNR TYASTLSHLRR NTPLGREGK
Sbjct:    3 GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGK 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144127.3030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ47_9PHAE1.540e-5998.10DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
D7FHZ3_ECTSI1.280e-5798.10DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A7S2W761_9STRA3.120e-4679.05DNA-directed RNA polymerase (Fragment) n=1 Tax=Euc... [more]
F0YIN3_AURAN3.840e-4478.10DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A7S2AX64_9STRA6.130e-4479.05DNA-directed RNA polymerase (Fragment) n=1 Tax=Dic... [more]
A0A7S2F9I8_9STRA9.680e-4479.05DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
F0YGN2_AURAN9.780e-4477.14DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A8J2SZW4_9STRA1.820e-4377.14DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
B8C598_THAPS2.180e-4277.14DNA-directed RNA polymerase subunit beta n=2 Tax=B... [more]
A0A1J0I9L5_9AGAR2.600e-4271.70DNA-directed RNA polymerase (Fragment) n=4 Tax=Lac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144127contigH-elongata_contig144127:496..1543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.4
Seed ortholog evalue2.1e-49
Seed eggNOG ortholog2880.D7FHZ3
Preferred nameRPB2
KEGG rclassRC02795
KEGG koko:K03010
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016070,GO:0016441,GO:0016458,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0030880,GO:0031047,GO:0031050,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035195,GO:0035196,GO:0035770,GO:0036464,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0214@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size324
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929854.5449123-CDS-H-elongata_contig144127:495..6541622929854.5449123-CDS-H-elongata_contig144127:495..654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144127 496..654 +
1691679184.268449-CDS-H-elongata_contig144127:495..6541691679184.268449-CDS-H-elongata_contig144127:495..654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144127 496..654 +
1622929854.5577781-CDS-H-elongata_contig144127:1378..15431622929854.5577781-CDS-H-elongata_contig144127:1378..1543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144127 1379..1543 +
1691679184.2818034-CDS-H-elongata_contig144127:1378..15431691679184.2818034-CDS-H-elongata_contig144127:1378..1543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144127 1379..1543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144127.3030.1prot_H-elongata_contig144127.3030.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144127 496..1543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144127.3030.1

>prot_H-elongata_contig144127.3030.1 ID=prot_H-elongata_contig144127.3030.1|Name=mRNA_H-elongata_contig144127.3030.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MWTGKKRLDLAGALLAGLFRQLFRKLTLNVRKYLQLCLDKGTQFVVGTAI
KSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASTLSHLRRLNT
PLGREGKQ
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mRNA from alignment at H-elongata_contig144127:496..1543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144127.3030.1 ID=mRNA_H-elongata_contig144127.3030.1|Name=mRNA_H-elongata_contig144127.3030.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1048bp|location=Sequence derived from alignment at H-elongata_contig144127:496..1543+ (Himanthalia elongata Himel1 dioecious)
ATGTGGACAGGGAAAAAGCGGCTCGATCTCGCGGGGGCGCTGCTGGCCGG
TCTGTTCCGGCAGCTGTTCCGAAAGCTTACACTGAACGTCCGCAAGTACC
TGCAGCTGTGCCTCGACAAGGGCACGCAGTTCGTGGTGGGAACAGCCATC
AAAAGCCAGGTAGGGTATGGCATGAGACGATATGGTACAGTATGGTACAT
CATGGTATGACACGTTAGGGCATGGTAGGGTACGGAACGGTATTGTGTAC
GGTTCGATTATAGTGCTACACGTGCTGCATGCTGGGGAGGGTGTCTCTCG
GACACATCCCCCCACCACTCCCCCTTGACTTTTTGCGTGGCGTTCTTTTT
TCGCTTATAATCTAAACTCGTTCAAACCACTCCGAATGTCTTAAGTTTTA
TTTCGCTGCCGGAGTTGTAGGATATTTGGGATTTTTTCCACCATAAATAG
CTTCGATTCTTCCCCTAGAAGTATCATGATTGTGTTGATAGGATCAGATG
AGGGGTCCAGTGTTGATTTCAAACCACGAATGGCGAGTCGATTAAGAAAA
CAATCAAGCCCCATCCCCCCCTTCCTCAATCCCTCTTCTCCCCTGTGGAA
ACGGAAGACGGTGGGAGGTGGGGTAGGGGGGGGGGGGGGGCAAAGTAAAG
TTACTCGGAGTGCGATACACGGAATACTACTGTAGAATGCAATGGTATGC
CTTGCCTCCGCCCCCCCCCCATCCCCAATATTTGTCGCTTTTTTATTTTT
TTATTTTTTATGCTGTCCCTGCCTCCGTCCATTCCTCTGCCGAGGTGTAT
CGATTCATGCTTTAACACCCTGTATCTTACTGTGCATAAATATAATTGTG
TGGTATGGGATAATATGGTATGGTATGGTCCAGTTTATCACGGACGGTCT
GAAGTACTCCCTGGCGACGGGCAACTGGGGCGACAAGAAGACGGCGACCA
AGGCGGGGGTTAGCCAGGTTCTCAACCGCCTCACCTACGCGTCGACACTG
TCTCACCTCCGCCGCCTCAACACCCCGCTCGGCCGCGAGGGCAAGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig144127:496..1543+

>mRNA_H-elongata_contig144127.3030.1 ID=mRNA_H-elongata_contig144127.3030.1|Name=mRNA_H-elongata_contig144127.3030.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig144127:496..1543+ (Himanthalia elongata Himel1 dioecious)
ATGTGGACAGGGAAAAAGCGGCTCGATCTCGCGGGGGCGCTGCTGGCCGG
TCTGTTCCGGCAGCTGTTCCGAAAGCTTACACTGAACGTCCGCAAGTACC
TGCAGCTGTGCCTCGACAAGGGCACGCAGTTCGTGGTGGGAACAGCCATC
AAAAGCCAGATGTGGACAGGGAAAAAGCGGCTCGATCTCGCGGGGGCGCT
GCTGGCCGGTCTGTTCCGGCAGCTGTTCCGAAAGCTTACACTGAACGTCC
GCAAGTACCTGCAGCTGTGCCTCGACAAGGGCACGCAGTTCGTGGTGGGA
ACAGCCATCAAAAGCCAGTTTATCACGGACGGTCTGAAGTACTCCCTGGC
GACGGGCAACTGGGGCGACAAGAAGACGGCGACCAAGGCGGGGGTTAGCC
AGGTTCTCAACCGCCTCACCTACGCGTCGACACTGTCTCACCTCCGCCGC
CTCAACACCCCGCTCGGCCGCGAGGGCAAGCAGTTTATCACGGACGGTCT
GAAGTACTCCCTGGCGACGGGCAACTGGGGCGACAAGAAGACGGCGACCA
AGGCGGGGGTTAGCCAGGTTCTCAACCGCCTCACCTACGCGTCGACACTG
TCTCACCTCCGCCGCCTCAACACCCCGCTCGGCCGCGAGGGCAAGCAG
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