mRNA_H-elongata_contig143866.3015.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143866.3015.1
Unique NamemRNA_H-elongata_contig143866.3015.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: D8LEE8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE8_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 6.710e-51
Identity = 92/101 (91.09%), Postives = 93/101 (92.08%), Query Frame = 2
Query:    2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGDDELTANYRVEQHVEVVEERERDGKLLRLLGQCHKSR 304
            VTSLVLDEADRMLDLGFEQDVRDIIG CA   KRQTAMFSATWPKSIRDLAAEFLA PVKVTVG D+LTANYRVEQHVEVVEERERDGKLLRLL  CHKSR
Sbjct:  314 VTSLVLDEADRMLDLGFEQDVRDIIGYCAGPSKRQTAMFSATWPKSIRDLAAEFLADPVKVTVGADDLTANYRVEQHVEVVEERERDGKLLRLLATCHKSR 414          
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: A0A835YU16_9STRA (DEAD box RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU16_9STRA)

HSP 1 Score: 138 bits (348), Expect = 4.260e-36
Identity = 74/101 (73.27%), Postives = 82/101 (81.19%), Query Frame = 2
Query:    2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGDDELTANYRVEQHVEVVEERERDGKLLRLLGQCHKSR 304
            V  +VLDEADRMLDLGFEQDVRDIIG  A A  RQTAMFSATWP+ IR LAAEFL  PV+VTVGDD+LTAN RV QHVEV+ ERERD +LL LL + H +R
Sbjct:  351 VVYMVLDEADRMLDLGFEQDVRDIIGATARA--RQTAMFSATWPREIRALAAEFLREPVRVTVGDDDLTANARVAQHVEVIGERERDARLLELLEKVHGAR 449          
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: A0A7S3XUU1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU1_HETAK)

HSP 1 Score: 123 bits (309), Expect = 7.890e-31
Identity = 67/105 (63.81%), Postives = 79/105 (75.24%), Query Frame = 2
Query:    2 VTSLVLDEADRMLDLGFEQDVRDIIGCC----AEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGDDELTANYRVEQHVEVVEERERDGKLLRLLGQCHKSR 304
            V  LVLDEADRMLDLGFEQD+R IIG C    A AG R+TAMFSATWP+ +R+LAAEFL RPV+VT+G  +L AN RV Q VEV+ ERER  +L +LL + H  R
Sbjct:  300 VAHLVLDEADRMLDLGFEQDMRAIIGACPAPGAAAGGRRTAMFSATWPREVRELAAEFLDRPVRVTIGGSKLAANARVSQCVEVMGERERGARLQQLLERYHDGR 404          
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: A0A7R9U8F6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8F6_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.360e-30
Identity = 63/101 (62.38%), Postives = 77/101 (76.24%), Query Frame = 2
Query:    2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGDDELTANYRVEQHVEVVEERERDGKLLRLLGQCHKSR 304
            V  LVLDEADRMLDLGFE+DV+ II  C    +RQT MFSATWP+SIR LAA FL  PVK+TVG DELT+N+RV+Q VEV+ ER+R  +L  LL + H+ +
Sbjct:  282 VEYLVLDEADRMLDLGFERDVKAIIANCMPPPERQTVMFSATWPESIRQLAATFLNNPVKITVGTDELTSNHRVQQTVEVIAERDRFQRLRELLNRYHRKK 382          
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: A0A7S1UCS2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCS2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.270e-29
Identity = 59/101 (58.42%), Postives = 77/101 (76.24%), Query Frame = 2
Query:    2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGDDELTANYRVEQHVEVVEERERDGKLLRLLGQCHKSR 304
            V  LVLDEADRMLD+GFE+DV+ II  C     RQT MFSATWP+SIR+LA+ FL  P+K++VG D+LT+N+RV+Q VEV+ E +R+ +L  LL + HK R
Sbjct:   25 VEYLVLDEADRMLDMGFERDVKAIIANCMPPPARQTVMFSATWPQSIRELASTFLNSPIKISVGSDDLTSNHRVKQTVEVIGEFDREQRLRELLKKYHKGR 125          
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: A0A1A0HKL3_9ASCO (DEAD-domain-containing protein n=2 Tax=Metschnikowia TaxID=27320 RepID=A0A1A0HKL3_9ASCO)

HSP 1 Score: 117 bits (293), Expect = 1.040e-28
Identity = 60/95 (63.16%), Postives = 75/95 (78.95%), Query Frame = 2
Query:    2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGD-DELTANYRVEQHVEVVEERERDGKLLRLL 283
            V  LVLDEADRMLD GFE+ ++ IIGC  +   RQT MF+ATWPK +RDLA+EF+  PVKVTVGD DEL+AN R+ Q VEV++ RE++ KLL+LL
Sbjct:  259 VEYLVLDEADRMLDKGFEEHIKKIIGCTPKKTSRQTLMFTATWPKEVRDLASEFMVSPVKVTVGDRDELSANKRITQIVEVIDPREKERKLLQLL 353          
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: W7TSQ0_9STRA (RNA helicase, DEAD-box type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSQ0_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.100e-28
Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 2
Query:    2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGDDELTANYRVEQHVEVVEERERDGKLLRLLGQCH 295
            V+ LVLDEADRMLD GFEQ +R I+  C   G+RQTA+FSATWP +I+ LA EFL  PVKVT+G ++L++N RV+Q VEVV E ER+G+L  LL Q H
Sbjct:  236 VSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYH 333          
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: M3AU96_PSEFD (Uncharacterized protein n=1 Tax=Pseudocercospora fijiensis (strain CIRAD86) TaxID=383855 RepID=M3AU96_PSEFD)

HSP 1 Score: 116 bits (290), Expect = 1.760e-28
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = 2
Query:   11 LVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGDD---ELTANYRVEQHVEVVEERERDGKLLRLLGQ 289
            LVLDEADRMLD GFEQD+R II  CA + +RQT MF+ATWP S+RDLAAEFL  PV++T+GD+   EL AN R+ Q VEVVEE  +  +LL LL Q
Sbjct:  202 LVLDEADRMLDKGFEQDIRKIITSCAPSAERQTVMFTATWPPSVRDLAAEFLRDPVRITIGDNASGELRANQRIVQEVEVVEEMAKQRRLLDLLNQ 297          
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: U1HQR2_ENDPU (RNA helicase n=2 Tax=Endocarpon pusillum TaxID=364733 RepID=U1HQR2_ENDPU)

HSP 1 Score: 116 bits (291), Expect = 1.780e-28
Identity = 60/105 (57.14%), Postives = 78/105 (74.29%), Query Frame = 2
Query:    2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVG------DDELTANYRVEQHVEVVEERERDGKLLRLLGQCHK 298
            V  LVLDEADRMLD GFE D+++I+G    + KRQTAMF+ATWPKSIR+LAA F+  PV++T+G        EL AN R++Q VEVVE+ E++G+LL+LL Q  K
Sbjct:  237 VKYLVLDEADRMLDKGFEDDIKEIVGKMPSSKKRQTAMFTATWPKSIRELAATFMTEPVRITIGRTDTEDSGELRANTRIKQSVEVVEQHEKEGRLLQLLNQFQK 341          
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: A0A6B2L5F5_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L5F5_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 2.270e-28
Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 2
Query:    2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVG--DDELTANYRVEQHVEVVEERERDGKLLRLLGQCHKSRQ 307
            V  LVLDEADRMLD+GFE+D+R IIGC  +  KRQTAMFSATWP SI+ LA+EFLA P+KVTVG   + +++N  V+Q VEV+E  +R+ +L  LL + HKS Q
Sbjct:  135 VEYLVLDEADRMLDMGFEKDIRTIIGCTPDKSKRQTAMFSATWPLSIQKLASEFLADPIKVTVGTLSEGMSSNANVKQIVEVLESDQRNDRLKALLKEYHKSGQ 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEE8_ECTSI6.710e-5191.09DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835YU16_9STRA4.260e-3673.27DEAD box RNA helicase n=1 Tax=Tribonema minus TaxI... [more]
A0A7S3XUU1_HETAK7.890e-3163.81Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U8F6_9STRA3.360e-3062.38Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1UCS2_9STRA1.270e-2958.42Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1A0HKL3_9ASCO1.040e-2863.16DEAD-domain-containing protein n=2 Tax=Metschnikow... [more]
W7TSQ0_9STRA1.100e-2861.22RNA helicase, DEAD-box type n=1 Tax=Nannochloropsi... [more]
M3AU96_PSEFD1.760e-2863.54Uncharacterized protein n=1 Tax=Pseudocercospora f... [more]
U1HQR2_ENDPU1.780e-2857.14RNA helicase n=2 Tax=Endocarpon pusillum TaxID=364... [more]
A0A6B2L5F5_9EUKA2.270e-2859.62Uncharacterized protein n=1 Tax=Arcella intermedia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143866contigH-elongata_contig143866:235..993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.9721625-CDS-H-elongata_contig143866:234..4151622929852.9721625-CDS-H-elongata_contig143866:234..415Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143866 235..415 +
1691679183.7261236-CDS-H-elongata_contig143866:234..4151691679183.7261236-CDS-H-elongata_contig143866:234..415Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143866 235..415 +
1622929853.0128448-CDS-H-elongata_contig143866:861..9921622929853.0128448-CDS-H-elongata_contig143866:861..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143866 862..992 +
1691679183.735476-CDS-H-elongata_contig143866:861..9921691679183.735476-CDS-H-elongata_contig143866:861..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143866 862..992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143866.3015.1prot_H-elongata_contig143866.3015.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143866 235..992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143866.3015.1

>prot_H-elongata_contig143866.3015.1 ID=prot_H-elongata_contig143866.3015.1|Name=mRNA_H-elongata_contig143866.3015.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
GDFAGPGRGGPNVGPGLRAGRARHHRMLRRGGETADGNVLGHVAQVHPRS
RRGVSCQTGQGYRRRRRIDGQLPCGATRGSGRGEGTRRQTLAAAGAVPQE
QART
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mRNA from alignment at H-elongata_contig143866:235..993+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143866.3015.1 ID=mRNA_H-elongata_contig143866.3015.1|Name=mRNA_H-elongata_contig143866.3015.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at H-elongata_contig143866:235..993+ (Himanthalia elongata Himel1 dioecious)
GGTGACTTCGCTGGTCCTGGACGAGGCGGACCGAATGTTGGACCTGGGCT TCGAGCAGGACGTGCGCGACATCATCGGATGCTGCGCAGAGGCGGGGAAA CGGCAGACGGCAATGTTCTCGGCCACGTGGCCCAAGTCCATCCGCGATCT CGCCGCGGAGTTTCTTGCCAGACCGGTCAAGGTCAGACGGCGTTTGACGT TCGGTAGGACCCGTGACGTCAATCGAACACATTTAAGAAATGCGGACAAA GACTCAAACTAAAACCACGACACGACCACACTTCCGTTTCACTTTTGACG ATGCATGTGTTACCCTATAGTCGTAGAACGCATGCGACATAGAAACATTG TTGGATATATAATGCGGTTGAGCTAGTCTGCACGCGCACGATGTGTTATC CTTGTTCCGAGCGGCGATCGCTGGTGGGAGAGTGCCCTCTGCTTCACGTA AGGATCGGGCGGTGCGGTGTGGTGCGGAGCGAGGGTAATTCAACCGTCCT CACGCCCGCCCACGATTGGTGCTGGCCTATTGAAGTGCGATCTGCGATCT GGGAGATAGACCCTTCGTTTCTTGTCCTTCCCCCAACCCTCGTCTGTGAT GACGTCATGGTGTCATGGTGTGGCTAGGTTACCGTCGGCGACGACGAATT GACGGCCAACTACCGTGTGGAGCAACACGTGGAAGTGGTAGAGGAGAGGG AACGAGACGGCAAACTCTTGCGGCTGCTGGGGCAGTGCCACAAGAGCAGG CAAGAACGG
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Coding sequence (CDS) from alignment at H-elongata_contig143866:235..993+

>mRNA_H-elongata_contig143866.3015.1 ID=mRNA_H-elongata_contig143866.3015.1|Name=mRNA_H-elongata_contig143866.3015.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig143866:235..993+ (Himanthalia elongata Himel1 dioecious)
GGTGACTTCGCTGGTCCTGGACGAGGCGGACCGAATGTTGGACCTGGGCT
TCGAGCAGGACGTGCGCGACATCATCGGATGCTGCGCAGAGGCGGGGAAA
CGGCAGACGGCAATGTTCTCGGCCACGTGGCCCAAGTCCATCCGCGATCT
CGCCGCGGAGTTTCTTGCCAGACCGGTCAAGGGTGACTTCGCTGGTCCTG
GACGAGGCGGACCGAATGTTGGACCTGGGCTTCGAGCAGGACGTGCGCGA
CATCATCGGATGCTGCGCAGAGGCGGGGAAACGGCAGACGGCAATGTTCT
CGGCCACGTGGCCCAAGTCCATCCGCGATCTCGCCGCGGAGTTTCTTGCC
AGACCGGTCAAGGTTACCGTCGGCGACGACGAATTGACGGCCAACTACCG
TGTGGAGCAACACGTGGAAGTGGTAGAGGAGAGGGAACGAGACGGCAAAC
TCTTGCGGCTGCTGGGGCAGTGCCACAAGAGCAGGCAAGAACGGTTACCG
TCGGCGACGACGAATTGACGGCCAACTACCGTGTGGAGCAACACGTGGAA
GTGGTAGAGGAGAGGGAACGAGACGGCAAACTCTTGCGGCTGCTGGGGCA
GTGCCACAAGAGCAGGCAAGAACG
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