mRNA_H-elongata_contig143700.3008.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143700.3008.1
Unique NamemRNA_H-elongata_contig143700.3008.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig143700.3008.1 vs. uniprot
Match: D8LEH3_ECTSI (VHS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH3_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 4.840e-42
Identity = 78/97 (80.41%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    1 DEGDLLSMVPPTIEALMDIMECSRDLTELLDNDAAPDVVDQTRSLVEQVIKKVEELEREGNPDEKDMDRYLKAHDDLQTVLRVYEDVLDGKEILPLS 291
            + G+LLSMVPPTIEALMDIME S+DLTELL N+ APDVVDQTR LV+QVIKKVE+L   GNPDEKD+DRYLKAHDDLQTVLRVYE V+DG E LPLS
Sbjct:  257 ENGELLSMVPPTIEALMDIMEGSKDLTELLGNEVAPDVVDQTRDLVQQVIKKVEDLGHSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLS 353
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BLAST of mRNA_H-elongata_contig143700.3008.1 vs. uniprot
Match: A0A6H5JQS7_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS7_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 7.790e-41
Identity = 78/97 (80.41%), Postives = 87/97 (89.69%), Query Frame = 1 
Query:    1 DEGDLLSMVPPTIEALMDIMECSRDLTELLDNDAAPDVVDQTRSLVEQVIKKVEELEREGNPDEKDMDRYLKAHDDLQTVLRVYEDVLDGKEILPLS 291
            + G+LLSMVPPTIEALMDIME S+DLTELL N+ APDVVDQTR LV+QVIKKVE+L + GNPDEKD+DRYLKAHDDLQTVLRVYE V+DG E LPLS
Sbjct:  262 ENGELLSMVPPTIEALMDIMEGSKDLTELLGNEVAPDVVDQTRDLVQQVIKKVEDLGQSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLS 358
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143700.3008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEH3_ECTSI4.840e-4280.41VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQS7_9PHAE7.790e-4180.41VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143700contigH-elongata_contig143700:311..958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-21_004690.2
Exons2
Model size291
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143700.3008.1prot_H-elongata_contig143700.3008.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143700 332..958 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.2886724-UTR-H-elongata_contig143700:310..3311622929852.2886724-UTR-H-elongata_contig143700:310..331Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig143700 311..331 +
1691679183.4667401-UTR-H-elongata_contig143700:310..3311691679183.4667401-UTR-H-elongata_contig143700:310..331Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig143700 311..331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.3088408-CDS-H-elongata_contig143700:331..4661622929852.3088408-CDS-H-elongata_contig143700:331..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143700 332..466 +
1691679183.475109-CDS-H-elongata_contig143700:331..4661691679183.475109-CDS-H-elongata_contig143700:331..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143700 332..466 +
1622929852.324945-CDS-H-elongata_contig143700:823..9581622929852.324945-CDS-H-elongata_contig143700:823..958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143700 824..958 +
1691679183.4834275-CDS-H-elongata_contig143700:823..9581691679183.4834275-CDS-H-elongata_contig143700:823..958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143700 824..958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143700.3008.1

>prot_H-elongata_contig143700.3008.1 ID=prot_H-elongata_contig143700.3008.1|Name=mRNA_H-elongata_contig143700.3008.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MVPPTIEALMDIMECSRDLTELLDNDAAPDVVDQTRSLVEQVIKKVEELE
REGNPDEKDMDRYLKAHDDLQTVLRVYEDVLDGKEILPLS
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mRNA from alignment at H-elongata_contig143700:311..958+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143700.3008.1 ID=mRNA_H-elongata_contig143700.3008.1|Name=mRNA_H-elongata_contig143700.3008.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=648bp|location=Sequence derived from alignment at H-elongata_contig143700:311..958+ (Himanthalia elongata Himel1 dioecious)
GATGAAGGTGATCTTTTGAGCATGGTTCCACCGACCATCGAGGCCCTCAT
GGACATTATGGAATGTAGCCGGGACCTAACCGAGTTGTTGGACAACGACG
CTGCCCCAGACGTGGTTGATCAGACGAGAAGCCTTGTCGAGCAGGTCATC
AAGAAGGTGGGAGGAATGCTTTTAATGGGGATAAAATATCAGCGCGATTA
TGTATTTATTTTATATATATATATATATATACCTCGGTAGCCTAGCCTGT
TATCATTATTCTCGGGACTGAGCTAACGGAATGCCGCCGCGAGCCGGGGA
TCCATCCCCGTCCGAAGGGGTAGATGCGGAGAGAGAGAGTGGGTGATATT
TCGTCTTTGGTTTGCTGGAAGACTCAAGCACGGACCAACGGTGTATTTTG
ATCATTATCATTCATCTTAGTAGGCCCAGGCCTCTATCACGTCACGTCAA
CCGCCTGGCGCATCCGTTTTGGAAATCCCATCGCATCGCGTGTCATCGGC
TGATGTCGAGCAGGTGGAAGAGCTCGAGCGTGAAGGCAATCCGGATGAGA
AAGACATGGACAGGTACCTCAAGGCCCATGATGACCTGCAGACCGTGCTT
CGCGTGTACGAGGACGTGCTGGACGGCAAGGAGATCCTACCTCTATCC
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Coding sequence (CDS) from alignment at H-elongata_contig143700:311..958+

>mRNA_H-elongata_contig143700.3008.1 ID=mRNA_H-elongata_contig143700.3008.1|Name=mRNA_H-elongata_contig143700.3008.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig143700:311..958+ (Himanthalia elongata Himel1 dioecious)
ATGGTTCCACCGACCATCGAGGCCCTCATGGACATTATGGAATGTAGCCG
GGACCTAACCGAGTTGTTGGACAACGACGCTGCCCCAGACGTGGTTGATC
AGACGAGAAGCCTTGTCGAGCAGGTCATCAAGAAGATGGTTCCACCGACC
ATCGAGGCCCTCATGGACATTATGGAATGTAGCCGGGACCTAACCGAGTT
GTTGGACAACGACGCTGCCCCAGACGTGGTTGATCAGACGAGAAGCCTTG
TCGAGCAGGTCATCAAGAAGGTGGAAGAGCTCGAGCGTGAAGGCAATCCG
GATGAGAAAGACATGGACAGGTACCTCAAGGCCCATGATGACCTGCAGAC
CGTGCTTCGCGTGTACGAGGACGTGCTGGACGGCAAGGAGATCCTACCTC
TATCCGTGGAAGAGCTCGAGCGTGAAGGCAATCCGGATGAGAAAGACATG
GACAGGTACCTCAAGGCCCATGATGACCTGCAGACCGTGCTTCGCGTGTA
CGAGGACGTGCTGGACGGCAAGGAGATCCTACCTCTATCC
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