mRNA_H-elongata_contig14320.2982.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5LI16_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI16_9PHAE) HSP 1 Score: 130 bits (328), Expect = 5.310e-35 Identity = 69/159 (43.40%), Postives = 100/159 (62.89%), Query Frame = 1
Query: 1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
VAT+NVRT+AV+G +G GRA VL+ + G +GLQE RR G + F +G+ VF CG + GG G VG+A++ ++ +A++ E++ RL+ + E+ G A+ F+ AYAPT+ A +K FW LD V +P E+LFVLMDANA+TG
Sbjct: 58 VATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVQEALCKASQYTTEYVDKRLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKERLFVLMDANAQTG 210
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5KDS6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS6_9PHAE) HSP 1 Score: 133 bits (334), Expect = 2.090e-34 Identity = 74/159 (46.54%), Postives = 97/159 (61.01%), Query Frame = 1
Query: 1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
VAT NVRT+AV+G +G GRA VL+ R V+G+QETRR+G + F AG+ VFC CG E GG G VG+A++ S+ + + EFI + L+ + L G A+ F+ AYAPTE A +K FW LD V +P E + VLMDANARTG
Sbjct: 115 VATWNVRTLAVNGANGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFC---CGTETGGVHG---VGIAVKESLCKTSTFTTEFIDESLMAMRFLLAGHRGAVNFVAAYAPTEPSTADSKRVFWGKLDSLVRRIPSKECVHVLMDANARTG 267
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE) HSP 1 Score: 133 bits (335), Expect = 3.240e-33 Identity = 75/159 (47.17%), Postives = 99/159 (62.26%), Query Frame = 1
Query: 1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
VAT NVRT+AV G +G GRA VL+ R V+G+QETRR+G + F AG+ VFC CG E GG G VG+A++ S+ + + EFI +RL+ + L L G A+ F+ A APTE AS+K FW LD V +P E ++VL+DANARTG
Sbjct: 60 VATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFC---CGTETGGVHG---VGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTG 212
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 133 bits (334), Expect = 4.720e-33 Identity = 69/159 (43.40%), Postives = 100/159 (62.89%), Query Frame = 1
Query: 1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
VAT+NVRT+AV+G +G GRA VL+ + G +GLQE RR G + F +G+ VF CG + GG G VG+A+ ++ ++++ E++ +RL+ + E+ G A+TF+ AYAPT+ +KH FW LD V +P E LFVLMDANA+TG
Sbjct: 308 VATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRIPAKEYLFVLMDANAQTG 460
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE) HSP 1 Score: 132 bits (331), Expect = 8.980e-33 Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = 1
Query: 1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
VAT+NVRT+AV+G +G GRA VL+ + G +GLQE RR G + F +G+ VF CG + GG G VG+A+ ++ ++++ E++ +RL+ + E+ G A+TF+ AYAPT+ +KH FW LD V P E LFVLMDANA+TG
Sbjct: 76 VATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG 228
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 132 bits (331), Expect = 1.170e-32 Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = 1
Query: 1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
VAT+NVRT+AV+G +G GRA VL+ + G +GLQE RR G + F +G+ VF CG + GG G VG+A+ ++ ++++ E++ +RL+ + E+ G A+TF+ AYAPT+ +KH FW LD V P E LFVLMDANA+TG
Sbjct: 21 VATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG 173
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE) HSP 1 Score: 132 bits (331), Expect = 1.210e-32 Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = 1
Query: 1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
VAT+NVRT+AV+G +G GRA VL+ + G +GLQE RR G + F +G+ VF CG + GG G VG+A+ ++ ++++ E++ +RL+ + E+ G A+TF+ AYAPT+ +KH FW LD V P E LFVLMDANA+TG
Sbjct: 512 VATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG 664
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE) HSP 1 Score: 128 bits (322), Expect = 1.420e-31 Identity = 68/159 (42.77%), Postives = 98/159 (61.64%), Query Frame = 1
Query: 1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
VAT+NVRT+AV+G +G GRA VL+ + +GLQE RR G + F +G+ VF CG + GG G VG+A+ ++ +A++ E++ +RL+ + E+ G A+ F+ AYAPT+ A +K FW LD V +P E LFVLMDANA+TG
Sbjct: 46 VATYNVRTLAVNGANGYGRADKVLHEAAKQDISFVGLQEVRRPGRTEFTASGFRVFT---CGTDKGGTHG---VGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKEYLFVLMDANAQTG 198
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 124 bits (310), Expect = 4.280e-31 Identity = 76/167 (45.51%), Postives = 97/167 (58.08%), Query Frame = 1
Query: 7 THNVRTMAVDGKHGVGR-ALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRT----SITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYAPTET------HNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
T NVRT+A G++ +G + V+ I GCDVIGLQETRR G + GY + SG G K+G GVG+AI+ S+ R E I RL+KV L + GR ITF+V YAPTET + + K +FWT+LD + EV H+ L VLMDANARTG
Sbjct: 152 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRI-GRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTG 316
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 126 bits (317), Expect = 5.590e-31 Identity = 77/167 (46.11%), Postives = 99/167 (59.28%), Query Frame = 1
Query: 7 THNVRTMAVDGKHGVGR-ALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRT----SITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASN------KHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
T NVRT+A G++ +G + V+ I GCDVIGLQETRR+G + GY + SG G K+G GVG+AI+ S+ R E IS RL+KV L++ GR +TFLV YAPTET + K +FWT+LD A+ EV + L VLMDANARTG
Sbjct: 179 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 343 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14320.2982.1 >prot_H-elongata_contig14320.2982.1 ID=prot_H-elongata_contig14320.2982.1|Name=mRNA_H-elongata_contig14320.2982.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp MAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSback to top mRNA from alignment at H-elongata_contig14320:6..479- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14320.2982.1 ID=mRNA_H-elongata_contig14320.2982.1|Name=mRNA_H-elongata_contig14320.2982.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at H-elongata_contig14320:6..479- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14320:6..479- >mRNA_H-elongata_contig14320.2982.1 ID=mRNA_H-elongata_contig14320.2982.1|Name=mRNA_H-elongata_contig14320.2982.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig14320:6..479- (Himanthalia elongata Himel1 dioecious)back to top |