mRNA_H-elongata_contig14320.2982.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14320.2982.1
Unique NamemRNA_H-elongata_contig14320.2982.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5LI16_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI16_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 5.310e-35
Identity = 69/159 (43.40%), Postives = 100/159 (62.89%), Query Frame = 1
Query:    1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
            VAT+NVRT+AV+G +G GRA  VL+   + G   +GLQE RR G + F  +G+ VF    CG + GG  G   VG+A++ ++ +A++   E++  RL+ +  E+ G   A+ F+ AYAPT+   A +K  FW  LD  V  +P  E+LFVLMDANA+TG
Sbjct:   58 VATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVQEALCKASQYTTEYVDKRLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKERLFVLMDANAQTG 210          
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5KDS6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.090e-34
Identity = 74/159 (46.54%), Postives = 97/159 (61.01%), Query Frame = 1
Query:    1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
            VAT NVRT+AV+G +G GRA  VL+   R    V+G+QETRR+G + F  AG+ VFC   CG E GG  G   VG+A++ S+ + +    EFI + L+ +   L G   A+ F+ AYAPTE   A +K  FW  LD  V  +P  E + VLMDANARTG
Sbjct:  115 VATWNVRTLAVNGANGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFC---CGTETGGVHG---VGIAVKESLCKTSTFTTEFIDESLMAMRFLLAGHRGAVNFVAAYAPTEPSTADSKRVFWGKLDSLVRRIPSKECVHVLMDANARTG 267          
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.240e-33
Identity = 75/159 (47.17%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
            VAT NVRT+AV G +G GRA  VL+   R    V+G+QETRR+G + F  AG+ VFC   CG E GG  G   VG+A++ S+ + +    EFI +RL+ + L L G   A+ F+ A APTE   AS+K  FW  LD  V  +P  E ++VL+DANARTG
Sbjct:   60 VATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFC---CGTETGGVHG---VGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTG 212          
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 4.720e-33
Identity = 69/159 (43.40%), Postives = 100/159 (62.89%), Query Frame = 1
Query:    1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
            VAT+NVRT+AV+G +G GRA  VL+   + G   +GLQE RR G + F  +G+ VF    CG + GG  G   VG+A+  ++ ++++   E++ +RL+ +  E+ G   A+TF+ AYAPT+     +KH FW  LD  V  +P  E LFVLMDANA+TG
Sbjct:  308 VATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRIPAKEYLFVLMDANAQTG 460          
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 8.980e-33
Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
            VAT+NVRT+AV+G +G GRA  VL+   + G   +GLQE RR G + F  +G+ VF    CG + GG  G   VG+A+  ++ ++++   E++ +RL+ +  E+ G   A+TF+ AYAPT+     +KH FW  LD  V   P  E LFVLMDANA+TG
Sbjct:   76 VATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG 228          
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.170e-32
Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
            VAT+NVRT+AV+G +G GRA  VL+   + G   +GLQE RR G + F  +G+ VF    CG + GG  G   VG+A+  ++ ++++   E++ +RL+ +  E+ G   A+TF+ AYAPT+     +KH FW  LD  V   P  E LFVLMDANA+TG
Sbjct:   21 VATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG 173          
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.210e-32
Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
            VAT+NVRT+AV+G +G GRA  VL+   + G   +GLQE RR G + F  +G+ VF    CG + GG  G   VG+A+  ++ ++++   E++ +RL+ +  E+ G   A+TF+ AYAPT+     +KH FW  LD  V   P  E LFVLMDANA+TG
Sbjct:  512 VATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG 664          
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.420e-31
Identity = 68/159 (42.77%), Postives = 98/159 (61.64%), Query Frame = 1
Query:    1 VATHNVRTMAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
            VAT+NVRT+AV+G +G GRA  VL+   +     +GLQE RR G + F  +G+ VF    CG + GG  G   VG+A+  ++ +A++   E++ +RL+ +  E+ G   A+ F+ AYAPT+   A +K  FW  LD  V  +P  E LFVLMDANA+TG
Sbjct:   46 VATYNVRTLAVNGANGYGRADKVLHEAAKQDISFVGLQEVRRPGRTEFTASGFRVFT---CGTDKGGTHG---VGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKEYLFVLMDANAQTG 198          
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 4.280e-31
Identity = 76/167 (45.51%), Postives = 97/167 (58.08%), Query Frame = 1
Query:    7 THNVRTMAVDGKHGVGR-ALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRT----SITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYAPTET------HNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
            T NVRT+A  G++ +G   + V+ I    GCDVIGLQETRR G  +    GY +  SG   G    K+G  GVG+AI+     S+    R  E I  RL+KV L + GR   ITF+V YAPTET       + + K +FWT+LD  + EV  H+ L VLMDANARTG
Sbjct:  152 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRI-GRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTG 316          
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 5.590e-31
Identity = 77/167 (46.11%), Postives = 99/167 (59.28%), Query Frame = 1
Query:    7 THNVRTMAVDGKHGVGR-ALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCSGECGGENGGKKGQGGVGLAIRT----SITRAARPPEFISDRLLKVTLELRGRAKAITFLVAYAPTETHNASN------KHAFWTSLDRAVEEVPRHEQLFVLMDANARTG 474
            T NVRT+A  G++ +G   + V+ I    GCDVIGLQETRR+G  +    GY +  SG   G    K+G  GVG+AI+     S+    R  E IS RL+KV L++ GR   +TFLV YAPTET   +       K +FWT+LD A+ EV   + L VLMDANARTG
Sbjct:  179 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 343          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14320.2982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LI16_9PHAE5.310e-3543.40Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDS6_9PHAE2.090e-3446.54Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBD7_9PHAE3.240e-3347.17Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K319_9PHAE4.720e-3343.40Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQZ7_9PHAE8.980e-3343.40Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7U5_9PHAE1.170e-3243.40Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM6_9PHAE1.210e-3243.40Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9G5_9PHAE1.420e-3142.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L660_9PHAE4.280e-3145.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3Q1_9PHAE5.590e-3146.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14320contigH-elongata_contig14320:6..479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score75.9
Seed ortholog evalue1.8e-11
Seed eggNOG ortholog7668.SPU_010878-tr
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs39VM0@33154,3BKMM@33208,3D1CS@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size450
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929849.9792862-CDS-H-elongata_contig14320:5..4551622929849.9792862-CDS-H-elongata_contig14320:5..455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14320 6..455 -
1691679182.585526-CDS-H-elongata_contig14320:5..4551691679182.585526-CDS-H-elongata_contig14320:5..455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14320 6..455 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929849.993839-UTR-H-elongata_contig14320:455..4791622929849.993839-UTR-H-elongata_contig14320:455..479Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14320 456..479 -
1691679182.5985045-UTR-H-elongata_contig14320:455..4791691679182.5985045-UTR-H-elongata_contig14320:455..479Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14320 456..479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14320.2982.1prot_H-elongata_contig14320.2982.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14320 6..455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14320.2982.1

>prot_H-elongata_contig14320.2982.1 ID=prot_H-elongata_contig14320.2982.1|Name=mRNA_H-elongata_contig14320.2982.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
MAVDGKHGVGRALDVLNIYDRLGCDVIGLQETRRSGHSAFNQAGYSVFCS
GECGGENGGKKGQGGVGLAIRTSITRAARPPEFISDRLLKVTLELRGRAK
AITFLVAYAPTETHNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANARTG
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mRNA from alignment at H-elongata_contig14320:6..479-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14320.2982.1 ID=mRNA_H-elongata_contig14320.2982.1|Name=mRNA_H-elongata_contig14320.2982.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at H-elongata_contig14320:6..479- (Himanthalia elongata Himel1 dioecious)
GTTGCCACACACAACGTCCGGACGATGGCGGTGGATGGGAAGCACGGAGT TGGACGGGCGCTAGATGTCTTGAATATATACGACCGACTGGGATGCGACG TTATAGGTTTGCAGGAGACCCGACGCAGTGGACATTCAGCCTTCAATCAG GCTGGCTACTCGGTGTTCTGCAGTGGTGAGTGCGGTGGGGAAAATGGTGG GAAGAAAGGGCAAGGTGGAGTAGGGCTAGCTATTAGAACCTCCATCACAC GTGCTGCACGCCCACCGGAGTTTATCAGTGATCGCTTGCTAAAGGTTACA CTTGAACTACGGGGTCGAGCCAAGGCCATTACGTTTCTTGTGGCGTATGC CCCCACTGAAACACATAATGCTAGTAATAAACATGCATTCTGGACGAGCT TGGATAGAGCTGTGGAGGAGGTACCTAGACACGAACAGCTGTTCGTGTTG ATGGATGCCAACGCCCGCACGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig14320:6..479-

>mRNA_H-elongata_contig14320.2982.1 ID=mRNA_H-elongata_contig14320.2982.1|Name=mRNA_H-elongata_contig14320.2982.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig14320:6..479- (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGGATGGGAAGCACGGAGTTGGACGGGCGCTAGATGTCTTGAA
TATATACGACCGACTGGGATGCGACGTTATAGGTTTGCAGGAGACCCGAC
GCAGTGGACATTCAGCCTTCAATCAGGCTGGCTACTCGGTGTTCTGCAGT
GGTGAGTGCGGTGGGGAAAATGGTGGGAAGAAAGGGCAAGGTGGAGTAGG
GCTAGCTATTAGAACCTCCATCACACGTGCTGCACGCCCACCGGAGTTTA
TCAGTGATCGCTTGCTAAAGGTTACACTTGAACTACGGGGTCGAGCCAAG
GCCATTACGTTTCTTGTGGCGTATGCCCCCACTGAAACACATAATGCTAG
TAATAAACATGCATTCTGGACGAGCTTGGATAGAGCTGTGGAGGAGGTAC
CTAGACACGAACAGCTGTTCGTGTTGATGGATGCCAACGCCCGCACGGGG
ATGGCGGTGGATGGGAAGCACGGAGTTGGACGGGCGCTAGATGTCTTGAA
TATATACGACCGACTGGGATGCGACGTTATAGGTTTGCAGGAGACCCGAC
GCAGTGGACATTCAGCCTTCAATCAGGCTGGCTACTCGGTGTTCTGCAGT
GGTGAGTGCGGTGGGGAAAATGGTGGGAAGAAAGGGCAAGGTGGAGTAGG
GCTAGCTATTAGAACCTCCATCACACGTGCTGCACGCCCACCGGAGTTTA
TCAGTGATCGCTTGCTAAAGGTTACACTTGAACTACGGGGTCGAGCCAAG
GCCATTACGTTTCTTGTGGCGTATGCCCCCACTGAAACACATAATGCTAG
TAATAAACATGCATTCTGGACGAGCTTGGATAGAGCTGTGGAGGAGGTAC
CTAGACACGAACAGCTGTTCGTGTTGATGGATGCCAACGCCCGCACGGGG
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