mRNA_H-elongata_contig142901.2966.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142901.2966.1
Unique NamemRNA_H-elongata_contig142901.2966.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142901.2966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142901contigH-elongata_contig142901:124..927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLeucine rich repeat protein
Ec32 orthologEc-00_002000.1
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929848.3064525-CDS-H-elongata_contig142901:123..2261622929848.3064525-CDS-H-elongata_contig142901:123..226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142901 124..226 -
1691679181.9712713-CDS-H-elongata_contig142901:123..2261691679181.9712713-CDS-H-elongata_contig142901:123..226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142901 124..226 -
1622929848.3207798-CDS-H-elongata_contig142901:763..9271622929848.3207798-CDS-H-elongata_contig142901:763..927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142901 764..927 -
1691679181.9807477-CDS-H-elongata_contig142901:763..9271691679181.9807477-CDS-H-elongata_contig142901:763..927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142901 764..927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142901.2966.1prot_H-elongata_contig142901.2966.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142901 124..927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142901.2966.1

>prot_H-elongata_contig142901.2966.1 ID=prot_H-elongata_contig142901.2966.1|Name=mRNA_H-elongata_contig142901.2966.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
PECRRLYLAGNKLVGSIPATLGDIAALSDLSLAGNELSGPIPDSFGNLTL
LRYLSLRDNKLSGPIPESLGNLVNLEELWLNANRIEGEL
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mRNA from alignment at H-elongata_contig142901:124..927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142901.2966.1 ID=mRNA_H-elongata_contig142901.2966.1|Name=mRNA_H-elongata_contig142901.2966.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=804bp|location=Sequence derived from alignment at H-elongata_contig142901:124..927- (Himanthalia elongata Himel1 dioecious)
CCGGAATGCAGGAGGTTATATCTGGCAGGGAACAAGCTGGTGGGATCTAT
CCCCGCAACCCTCGGCGACATCGCCGCGCTCTCGGACCTCAGCCTGGCTG
GAAACGAGCTCTCCGGCCCGATCCCTGACAGCTTCGGCAACCTCACGCTG
CTGCGATATCTCAGGTACTTTTCTGCCGTCGTGGTGGTCGTCGTAGCGCG
ATTATCGTCCTCTGCTCCTCTGCATTCGCTACATATCCGCTTGCTTGACC
ACACGAGAAGCTTTGAGAACCGTTTGGGGATCATATATTATAGATTGGCT
ATGCTATAACCTAGACTGTCTAGAAGCTCAATTTTCGCCGGTCGAATATT
TTGTTTGTTTGTTTGTTTGTTTGTTTGTTTCGGTTGTGTGTACGCTTCAC
ATGTTTTTGCGGGAAAAAAATAAATAAATAAATCGCTTATTTGTTGTTTT
ATTCCTCCACGTAGTGCTAATTTTTCAAAACTACTAGTACTACTAATAAT
AATAATATGACGTGTACTATATATAGTATAGTATATATACGGTATAACGG
TTCCATACAAAATACGCCCAAAATTGACACCGCACACTACCCCGATGGTG
ACATCAACATGAACATCGAACCGACCCTCTCCCTGCCCGAGAACCGACCG
TTGGTATGCCGTTGGTGTCTGATGTGTGTTGCGTGGGTACATCGATCCCA
GCCTCAGAGACAACAAGCTCAGCGGCCCCATCCCAGAATCTCTGGGAAAC
CTGGTCAACCTGGAGGAGCTGTGGCTCAACGCGAACAGGATCGAGGGTGA
GTTG
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Coding sequence (CDS) from alignment at H-elongata_contig142901:124..927-

>mRNA_H-elongata_contig142901.2966.1 ID=mRNA_H-elongata_contig142901.2966.1|Name=mRNA_H-elongata_contig142901.2966.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig142901:124..927- (Himanthalia elongata Himel1 dioecious)
CCGGAATGCAGGAGGTTATATCTGGCAGGGAACAAGCTGGTGGGATCTAT
CCCCGCAACCCTCGGCGACATCGCCGCGCTCTCGGACCTCAGCCTGGCTG
GAAACGAGCTCTCCGGCCCGATCCCTGACAGCTTCGGCAACCTCACGCTG
CTGCGATATCTCAGCCGGAATGCAGGAGGTTATATCTGGCAGGGAACAAG
CTGGTGGGATCTATCCCCGCAACCCTCGGCGACATCGCCGCGCTCTCGGA
CCTCAGCCTGGCTGGAAACGAGCTCTCCGGCCCGATCCCTGACAGCTTCG
GCAACCTCACGCTGCTGCGATATCTCAGCCTCAGAGACAACAAGCTCAGC
GGCCCCATCCCAGAATCTCTGGGAAACCTGGTCAACCTGGAGGAGCTGTG
GCTCAACGCGAACAGGATCGAGGGTGAGTTGCCTCAGAGACAACAAGCTC
AGCGGCCCCATCCCAGAATCTCTGGGAAACCTGGTCAACCTGGAGGAGCT
GTGGCTCAACGCGAACAGGATCGAGGGTGAGTTG
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