mRNA_H-elongata_contig142634.2951.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142634.2951.1
Unique NamemRNA_H-elongata_contig142634.2951.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142634.2951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142634contigH-elongata_contig142634:55..1276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size727
Cds size600
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142634.2951.1prot_H-elongata_contig142634.2951.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142634 55..744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.818586-CDS-H-elongata_contig142634:54..5871622929846.818586-CDS-H-elongata_contig142634:54..587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142634 55..587 -
1691679181.506593-CDS-H-elongata_contig142634:54..5871691679181.506593-CDS-H-elongata_contig142634:54..587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142634 55..587 -
1622929846.8367596-CDS-H-elongata_contig142634:677..7441622929846.8367596-CDS-H-elongata_contig142634:677..744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142634 678..744 -
1691679181.5140114-CDS-H-elongata_contig142634:677..7441691679181.5140114-CDS-H-elongata_contig142634:677..744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142634 678..744 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.8510416-UTR-H-elongata_contig142634:744..7681622929846.8510416-UTR-H-elongata_contig142634:744..768Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142634 745..768 -
1691679181.52166-UTR-H-elongata_contig142634:744..7681691679181.52166-UTR-H-elongata_contig142634:744..768Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142634 745..768 -
1622929846.865594-UTR-H-elongata_contig142634:1173..12761622929846.865594-UTR-H-elongata_contig142634:1173..1276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142634 1174..1276 -
1691679181.5298004-UTR-H-elongata_contig142634:1173..12761691679181.5298004-UTR-H-elongata_contig142634:1173..1276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142634 1174..1276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142634.2951.1

>prot_H-elongata_contig142634.2951.1 ID=prot_H-elongata_contig142634.2951.1|Name=mRNA_H-elongata_contig142634.2951.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp
MFIGRDTGSPMPSPGDRPPHYMAAGAGGAVRRGAFRNSVSVSGGQRKTAA
EANNDNNNTANVELPLAILSEPGSSESTEATMDDATAVPLTVAAHNAAKA
ARASQSPPSILEGSSILEADSASAATELAMEQSIGLRWGPSDVYGDLRSA
SPSLSPGIIPEDAIAEDIDTDSIDDDNNNNVGVGVGDVSGSGRTQGFEIS
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mRNA from alignment at H-elongata_contig142634:55..1276-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142634.2951.1 ID=mRNA_H-elongata_contig142634.2951.1|Name=mRNA_H-elongata_contig142634.2951.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1222bp|location=Sequence derived from alignment at H-elongata_contig142634:55..1276- (Himanthalia elongata Himel1 dioecious)
TATGGTATGGTATGGTATGGCATGTTAGGGTAAGAACTACAGGTACAAGG
AAGACTACGCATTGGAGAGCGTGGAGTTCGCGGGAGCTTACGACGAACCC
GAAGTGAGTCTACAGTACTATTAATAATAGTATAGTATATCATACCGTAT
CTTGCCGTATTGTACCGTATGATTTTAACATTCGTTGAAGTATCACTTAC
AGCTCGCTCTTAATGGCTGTTATTCAAGCGACAGATGTCGAGAGGTCAAC
ACGACTAGAGTAACTAAACCCTAAAAGCCGAATCTCCTGTGCGCGAGGCC
GTACCGCATGATCTCCCTCAACAAATCTCTCCCGCCCTTCTTGAGGTGTT
GTAACTCTTTAATACTCGTCTAAAAACCCTGTACGCATGCGTTGTCAGCG
CCTCCCATCGCCTCCCATCGCCTCAAGAGGGCATAGTGTGTTTCCACCAA
TTCCCATCTACCATCTATCTAAACCTTATCCAAACACACTTTGTCGCCGA
TTCGACAGGGCGAATTCAAGACCACGAATCCAATGTTCATCGGGAGAGAC
ACTGGAAGCCCCATGCCTTCTCCCGGCGACCGACCACCTCACTACATGGG
CGCACTACATAGCCATCGCCACGCGGAAGATTCCACCAACCATTCGTTCA
GTGCAGGATCGTCGTCCTCCTCCGTTGCGGCCGCAGCTGCTGCGGGGGCG
GGTGGCGCGGTTCGCAGGGGCGCCTTCCGCAACTCCGTGTCCGTGTCCGG
AGGGCAGCGCAAAACCGCCGCTGAGGCAAACAACGACAACAACAACACCG
CCAACGTTGAATTGCCCCTCGCCATACTCTCGGAACCCGGGTCTAGCGAG
TCCACCGAGGCCACCATGGATGATGCCACCGCGGTACCATTAACAGTTGC
CGCTCACAACGCGGCCAAGGCTGCCAGAGCGAGTCAATCCCCCCCATCGA
TCCTCGAAGGGAGTTCCATCCTAGAGGCGGATTCGGCTTCGGCGGCAACC
GAGTTGGCCATGGAACAGTCGATCGGTCTCAGGTGGGGCCCTTCTGACGT
CTACGGCGATTTGCGCAGCGCGAGCCCCAGTCTCAGCCCTGGCATTATTC
CAGAAGACGCTATCGCTGAGGACATCGATACCGACAGCATCGATGATGAT
AATAATAATAATGTTGGTGTTGGTGTAGGCGATGTTAGTGGCTCGGGCCG
AACGCAGGGCTTTGAAATCTCC
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Coding sequence (CDS) from alignment at H-elongata_contig142634:55..1276-

>mRNA_H-elongata_contig142634.2951.1 ID=mRNA_H-elongata_contig142634.2951.1|Name=mRNA_H-elongata_contig142634.2951.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig142634:55..1276- (Himanthalia elongata Himel1 dioecious)
ATGTTCATCGGGAGAGACACTGGAAGCCCCATGCCTTCTCCCGGCGACCG
ACCACCTCACTACATGGATGTTCATCGGGAGAGACACTGGAAGCCCCATG
CCTTCTCCCGGCGACCGACCACCTCACTACATGGCTGCGGGGGCGGGTGG
CGCGGTTCGCAGGGGCGCCTTCCGCAACTCCGTGTCCGTGTCCGGAGGGC
AGCGCAAAACCGCCGCTGAGGCAAACAACGACAACAACAACACCGCCAAC
GTTGAATTGCCCCTCGCCATACTCTCGGAACCCGGGTCTAGCGAGTCCAC
CGAGGCCACCATGGATGATGCCACCGCGGTACCATTAACAGTTGCCGCTC
ACAACGCGGCCAAGGCTGCCAGAGCGAGTCAATCCCCCCCATCGATCCTC
GAAGGGAGTTCCATCCTAGAGGCGGATTCGGCTTCGGCGGCAACCGAGTT
GGCCATGGAACAGTCGATCGGTCTCAGGTGGGGCCCTTCTGACGTCTACG
GCGATTTGCGCAGCGCGAGCCCCAGTCTCAGCCCTGGCATTATTCCAGAA
GACGCTATCGCTGAGGACATCGATACCGACAGCATCGATGATGATAATAA
TAATAATGTTGGTGTTGGTGTAGGCGATGTTAGTGGCTCGGGCCGAACGC
AGGGCTTTGAAATCTCCCTGCGGGGGCGGGTGGCGCGGTTCGCAGGGGCG
CCTTCCGCAACTCCGTGTCCGTGTCCGGAGGGCAGCGCAAAACCGCCGCT
GAGGCAAACAACGACAACAACAACACCGCCAACGTTGAATTGCCCCTCGC
CATACTCTCGGAACCCGGGTCTAGCGAGTCCACCGAGGCCACCATGGATG
ATGCCACCGCGGTACCATTAACAGTTGCCGCTCACAACGCGGCCAAGGCT
GCCAGAGCGAGTCAATCCCCCCCATCGATCCTCGAAGGGAGTTCCATCCT
AGAGGCGGATTCGGCTTCGGCGGCAACCGAGTTGGCCATGGAACAGTCGA
TCGGTCTCAGGTGGGGCCCTTCTGACGTCTACGGCGATTTGCGCAGCGCG
AGCCCCAGTCTCAGCCCTGGCATTATTCCAGAAGACGCTATCGCTGAGGA
CATCGATACCGACAGCATCGATGATGATAATAATAATAATGTTGGTGTTG
GTGTAGGCGATGTTAGTGGCTCGGGCCGAACGCAGGGCTTTGAAATCTCC
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