mRNA_H-elongata_contig142299.2927.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142299.2927.1
Unique NamemRNA_H-elongata_contig142299.2927.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig142299.2927.1 vs. uniprot
Match: A0A6H5JRE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE2_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.410e-21
Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:    4 MNLEGKQDRSSVYIKDEDGILLRDAVLIRERWDRWFQTLLNTKSPEHEPNITESPDQWPENTPLNIQPTMQELTDAIRSSVSGKAVGPDGVSIDLFKV 297
            +++EGK+  +S  IKDEDG +LRD  L R+RW RWF  LLNT+SP  + + T+   QWP   PL+  P++ E+ +A+R   + KAVGPD +  +L K+
Sbjct:    2 IDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTRSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 99
[Close]
BLAST of mRNA_H-elongata_contig142299.2927.1 vs. uniprot
Match: A0A6H5JFE9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE9_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.520e-21
Identity = 48/106 (45.28%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:    4 MNLEGKQDRSSVYIKDEDGILLRDAVLIRERWDRWFQTLLNTKSPEHEPNITESPDQWPENTPLNIQPTMQELTDAIRSSVSGKAVGPDGVSIDLFKVALTGDPAL 321
            +++EGK+  +S  IKDEDG +LRD  LIR+RW RWF  LLNTKSP  + +  +   +WP   PL+  P++ E+ +A+R   + KAVGPD +  +L K+ L GD  L
Sbjct:   47 IDVEGKRSFTSRSIKDEDGKVLRDPTLIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDILPAELIKLFLDGDQGL 152
[Close]
BLAST of mRNA_H-elongata_contig142299.2927.1 vs. uniprot
Match: A0A6H5KE31_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE31_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.550e-21
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    4 MNLEGKQDRSSVYIKDEDGILLRDAVLIRERWDRWFQTLLNTKSPEHEPNITESPDQWPENTPLNIQPTMQELTDAIRSSVSGKAVGPDGVSIDLFKVALTGD 312
            +++EGK+  +S  IKDEDG +LRD  L R+RW RWF  LLNTKSP  + + T+   QWP   PL+  P++ E+ +A+R   + KAVGPD +  +L K+ L GD
Sbjct:    2 LDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGD 104
[Close]
BLAST of mRNA_H-elongata_contig142299.2927.1 vs. uniprot
Match: A0A6H5JY74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY74_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.650e-21
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:    4 MNLEGKQDRSSVYIKDEDGILLRDAVLIRERWDRWFQTLLNTKSPEHEPNITESPDQWPENTPLNIQPTMQELTDAIRSSVSGKAVGPDGVSIDLFKVALTGDPAL 321
            +++EGK+  +S  IKDEDG +LRD  L R+RW RWF  LLNTKSP  + + T+   QWP   PL+  P++ E+ +A+R   + KAVGPD +  +L K+ L GD  L
Sbjct:  300 IDVEGKRPFTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGL 405
[Close]
BLAST of mRNA_H-elongata_contig142299.2927.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.900e-21
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    4 MNLEGKQDRSSVYIKDEDGILLRDAVLIRERWDRWFQTLLNTKSPEHEPNITESPDQWPENTPLNIQPTMQELTDAIRSSVSGKAVGPDGVSIDLFKVALTGD 312
            +++EGK+  +S  IKDEDG +LRD  L R+RW RWF  LLNTKSP  + + T+   QWP   PL+  P++ E+ +A+R   + KAVGPD +  +L K+ L GD
Sbjct:    2 IDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGD 104
[Close]
BLAST of mRNA_H-elongata_contig142299.2927.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.040e-21
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    4 MNLEGKQDRSSVYIKDEDGILLRDAVLIRERWDRWFQTLLNTKSPEHEPNITESPDQWPENTPLNIQPTMQELTDAIRSSVSGKAVGPDGVSIDLFKVALTGD 312
            +++EGK+  +S  IKDEDG +LRD  L R+RW RWF  LLNTKSP  + + T+   QWP   PL+  P++ E+ +A+R   + KAVGPD +  +L K+ L GD
Sbjct:  280 IDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGD 382
[Close]
BLAST of mRNA_H-elongata_contig142299.2927.1 vs. uniprot
Match: A0A6H5JUB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB0_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.070e-21
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    4 MNLEGKQDRSSVYIKDEDGILLRDAVLIRERWDRWFQTLLNTKSPEHEPNITESPDQWPENTPLNIQPTMQELTDAIRSSVSGKAVGPDGVSIDLFKVALTGD 312
            +++EGK+  +S  IKDEDG +LRD  L R+RW RWF  LLNTKSP  + + T+   QWP   PL+  P++ E+ +A+R   + KAVGPD +  +L K+ L GD
Sbjct:   65 IDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGD 167
[Close]
BLAST of mRNA_H-elongata_contig142299.2927.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.090e-21
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    4 MNLEGKQDRSSVYIKDEDGILLRDAVLIRERWDRWFQTLLNTKSPEHEPNITESPDQWPENTPLNIQPTMQELTDAIRSSVSGKAVGPDGVSIDLFKVALTGD 312
            +++EGK+  +S  IKDEDG +LRD  L R+RW RWF  LLNTKSP  + + T+   QWP   PL+  P++ E+ +A+R   + KAVGPD +  +L K+ L GD
Sbjct:  418 IDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGD 520
[Close]
BLAST of mRNA_H-elongata_contig142299.2927.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.110e-21
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    4 MNLEGKQDRSSVYIKDEDGILLRDAVLIRERWDRWFQTLLNTKSPEHEPNITESPDQWPENTPLNIQPTMQELTDAIRSSVSGKAVGPDGVSIDLFKVALTGD 312
            +++EGK+  +S  IKDEDG +LRD  L R+RW RWF  LLNTKSP  + + T+   QWP   PL+  P++ E+ +A+R   + KAVGPD +  +L K+ L GD
Sbjct:  530 IDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGD 632
[Close]
BLAST of mRNA_H-elongata_contig142299.2927.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.140e-21
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    4 MNLEGKQDRSSVYIKDEDGILLRDAVLIRERWDRWFQTLLNTKSPEHEPNITESPDQWPENTPLNIQPTMQELTDAIRSSVSGKAVGPDGVSIDLFKVALTGD 312
            +++EGK+  +S  IKDEDG +LRD  L R+RW RWF  LLNTKSP  + + T+   QWP   PL+  P++ E+ +A+R   + KAVGPD +  +L K+ L GD
Sbjct:  651 IDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGD 753
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142299.2927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRE2_9PHAE2.410e-2144.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JFE9_9PHAE2.520e-2145.28Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KE31_9PHAE3.550e-2146.60Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JY74_9PHAE3.650e-2146.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKB2_9PHAE5.900e-2146.60Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8Z5_9PHAE6.040e-2146.60Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUB0_9PHAE6.070e-2146.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC90_9PHAE6.090e-2146.60Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE6.110e-2146.60Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDI8_9PHAE6.140e-2146.60Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142299contigH-elongata_contig142299:72..395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.085617-CDS-H-elongata_contig142299:71..3921622929845.085617-CDS-H-elongata_contig142299:71..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142299 72..392 -
1691679180.7736948-CDS-H-elongata_contig142299:71..3921691679180.7736948-CDS-H-elongata_contig142299:71..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142299 72..392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.1058025-UTR-H-elongata_contig142299:392..3951622929845.1058025-UTR-H-elongata_contig142299:392..395Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142299 393..395 -
1691679180.7818258-UTR-H-elongata_contig142299:392..3951691679180.7818258-UTR-H-elongata_contig142299:392..395Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142299 393..395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142299.2927.1prot_H-elongata_contig142299.2927.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142299 72..392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142299.2927.1

>prot_H-elongata_contig142299.2927.1 ID=prot_H-elongata_contig142299.2927.1|Name=mRNA_H-elongata_contig142299.2927.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MNLEGKQDRSSVYIKDEDGILLRDAVLIRERWDRWFQTLLNTKSPEHEPN
ITESPDQWPENTPLNIQPTMQELTDAIRSSVSGKAVGPDGVSIDLFKVAL
TGDPAL*
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mRNA from alignment at H-elongata_contig142299:72..395-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142299.2927.1 ID=mRNA_H-elongata_contig142299.2927.1|Name=mRNA_H-elongata_contig142299.2927.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig142299:72..395- (Himanthalia elongata Himel1 dioecious)
ACGATGAATTTGGAAGGGAAACAAGACCGCAGCTCGGTGTACATCAAAGA
CGAAGACGGCATACTCCTGAGGGACGCTGTACTTATCCGCGAACGATGGG
ACCGATGGTTTCAAACCCTCTTGAACACCAAATCGCCTGAGCATGAGCCA
AACATCACTGAAAGCCCCGACCAGTGGCCGGAGAACACGCCGCTAAACAT
TCAGCCCACGATGCAGGAGTTGACAGACGCCATCCGCTCGTCCGTGAGCG
GAAAGGCTGTTGGACCGGACGGAGTTTCGATTGACCTGTTCAAGGTCGCC
CTCACCGGCGATCCTGCCCTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig142299:72..395-

>mRNA_H-elongata_contig142299.2927.1 ID=mRNA_H-elongata_contig142299.2927.1|Name=mRNA_H-elongata_contig142299.2927.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig142299:72..395- (Himanthalia elongata Himel1 dioecious)
ATGAATTTGGAAGGGAAACAAGACCGCAGCTCGGTGTACATCAAAGACGA
AGACGGCATACTCCTGAGGGACGCTGTACTTATCCGCGAACGATGGGACC
GATGGTTTCAAACCCTCTTGAACACCAAATCGCCTGAGCATGAGCCAAAC
ATCACTGAAAGCCCCGACCAGTGGCCGGAGAACACGCCGCTAAACATTCA
GCCCACGATGCAGGAGTTGACAGACGCCATCCGCTCGTCCGTGAGCGGAA
AGGCTGTTGGACCGGACGGAGTTTCGATTGACCTGTTCAAGGTCGCCCTC
ACCGGCGATCCTGCCCTGTGAATGAATTTGGAAGGGAAACAAGACCGCAG
CTCGGTGTACATCAAAGACGAAGACGGCATACTCCTGAGGGACGCTGTAC
TTATCCGCGAACGATGGGACCGATGGTTTCAAACCCTCTTGAACACCAAA
TCGCCTGAGCATGAGCCAAACATCACTGAAAGCCCCGACCAGTGGCCGGA
GAACACGCCGCTAAACATTCAGCCCACGATGCAGGAGTTGACAGACGCCA
TCCGCTCGTCCGTGAGCGGAAAGGCTGTTGGACCGGACGGAGTTTCGATT
GACCTGTTCAAGGTCGCCCTCACCGGCGATCCTGCCCTGTGA
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