prot_H-elongata_contig141978.2901.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig141978.2901.1
Unique Nameprot_H-elongata_contig141978.2901.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length47
Homology
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BLAST of mRNA_H-elongata_contig141978.2901.1 vs. uniprot
Match: D8LMI5_ECTSI (S4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMI5_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 6.850e-17
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0 
Query:    1 KVNGEPCGPVPLLVAFHKPKGVITTLSDEWSREDLSHVLPKSLLRK 46
            +VNGE  GPVPLLVAFHKPKGVITTLSD+W REDLS VLPKSLL K
Sbjct:  183 EVNGEVHGPVPLLVAFHKPKGVITTLSDDWDREDLSDVLPKSLLLK 228
[Close]
BLAST of mRNA_H-elongata_contig141978.2901.1 vs. uniprot
Match: A0A835YWQ3_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWQ3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.810e-8
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 0 
Query:    1 KVNGEPCGPVPLLVAFHKPKGVITTLSDEWSREDLSHVLPKSLLRK 46
            +V+G+    +PLL+AFHKPKG+++TLSD+W R  L  VLP + L++
Sbjct:   33 RVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQR 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141978.2901.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMI5_ECTSI6.850e-1784.78S4 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A835YWQ3_9STRA1.810e-850.00Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141978contigH-elongata_contig141978:397..537 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141978.2901.1mRNA_H-elongata_contig141978.2901.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig141978 397..537 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig141978.2901.1 ID=prot_H-elongata_contig141978.2901.1|Name=mRNA_H-elongata_contig141978.2901.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
KVNGEPCGPVPLLVAFHKPKGVITTLSDEWSREDLSHVLPKSLLRK*
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