mRNA_H-elongata_contig1415.2882.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1415.2882.1
Unique NamemRNA_H-elongata_contig1415.2882.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: D8LD47_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD47_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 7.100e-100
Identity = 154/260 (59.23%), Postives = 194/260 (74.62%), Query Frame = 1
Query:    1 YIHHLVLTAYTGSDDCGRSCEEWS-DNSYYTTSSNSSSTISYVTSEDGSEIPSFCVFEFASIFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
            Y+HHL LTA+TG+ DCG+ C +W   N       +S S  S   + +   IP FC  +FA+IF WAPG AD QLP ++GFRFG+ S  YTSL ++THYNN DGD G VDSSGVR+YYT+++R +DMGV++LGDP+VDL+G  +PEGKSSV F+CPG+CTE  F+ E+VT+Y+H LHMHENGQR+ TRQYR +  G+E LV   E EYYSFLQ+GG+V   N S +I+KGDRFET C+YDTSLSSV S +V FG GSE EM
Sbjct:  260 YVHHLTLTAFTGTHDCGQDCIDWVLANLPDDDEPSSQSAYSDPYTFNNMTIPDFCYQQFANIFAWAPGSADVQLPGNVGFRFGNDS--YTSLRVETHYNNPDGDAGEVDSSGVRVYYTEDIREMDMGVITLGDPSVDLIGTKLPEGKSSVEFDCPGACTETYFEAESVTVYSHFLHMHENGQRMETRQYRNDSDGNEQLVDATEVEYYSFLQAGGHVTAHNGSDIIQKGDRFETTCYYDTSLSSVDSTNVTFGEGSEQEM 517          
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: D7G337_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G337_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 5.940e-98
Identity = 156/292 (53.42%), Postives = 198/292 (67.81%), Query Frame = 1
Query:    1 YIHHLVLTAYTGSDDCGRSCEEWSDNSY-----------------------------YTTSSNSSSTISYVTSEDGSEI--PSFC--VFEFASIFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
            Y+HHLVLT + G+ DCG +C EW D  +                              +  S+ SS++S+    +   I  P+FC    E A IFLWAPG ++ +LPDD+GF FG+ SGG+ SL +QTHYNN DG  G  DSSGVR+YYT+ELRPI MG++ LGDP V L   P+PEGKSS  F CPGSC+E NF+EE VT++ H+LHMHENGQR++TRQYR +  G+EVL+H AE EYYS LQ+GG++V  N+++ I+KGDRF TEC YDTSLSSVSS +V FGLGSE EM
Sbjct:  230 YVHHLVLTGFYGASDCGHACNEWLDEIFGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXSYPSDDSSSVSFTEYFENLNITVPTFCSNYGEQADIFLWAPGTSNLELPDDVGFLFGNESGGFNSLNIQTHYNNPDGVSGKNDSSGVRVYYTEELRPIQMGLMKLGDPFVALYDQPLPEGKSSFSFGCPGSCSETNFEEEEVTVFIHMLHMHENGQRMVTRQYRNDSDGNEVLIHTAEVEYYSVLQAGGHLVTNNETITIRKGDRFTTECMYDTSLSSVSSANVTFGLGSEQEM 521          
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: D7G217_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G217_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 3.380e-96
Identity = 155/294 (52.72%), Postives = 190/294 (64.63%), Query Frame = 1
Query:    1 YIHHLVLTAYTGSDDCGRSCEEWSDNSY-------------------------------YTTSSNSSSTISYVTSEDGSEI--PSFC--VFEFASIFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
            Y+HHLVLT + G+ DCG +C EW D  +                                +  S+ SS++S+    +   I  PSFC    +FA IFLWAPG ++ +LPDD+GF FG+ SGG+ SL +QTHYNN DG  G  DSSGVR+YYT+ELRPI MGVL LGDP V L   P+PEGKSS  F CPG+C+E NF+EE VTI+ HVLHMHENGQR++T QYR +  G+E L+H  E  YYSFLQ+G +VV VN S  IKKGD F T+C YDTSLSSV   +V FG GSE EM
Sbjct:   74 YVHHLVLTGFYGASDCGNACNEWLDEMFGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYPSDDSSSVSFTEYFENLNITVPSFCSNYGDFADIFLWAPGTSNLELPDDVGFLFGNESGGFNSLNIQTHYNNPDGVSGKNDSSGVRVYYTEELRPIQMGVLKLGDPFVALYDQPLPEGKSSFSFGCPGTCSETNFEEEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELIHTTEVGYYSFLQAGAHVVTVNGSATIKKGDSFTTQCMYDTSLSSVDPANVTFGEGSEQEM 367          
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: D7FP38_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP38_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 2.970e-94
Identity = 149/262 (56.87%), Postives = 189/262 (72.14%), Query Frame = 1
Query:    1 YIHHLVLTAYTGSDDCGRSCEEWSDNSYYTT-SSNSSSTISYVTSEDGSEIPSFC--VFEFASIFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
            ++HHLVLT + G  DCG +C EW D  +    SS SSS ++ +T      +P FC  + + A IF+WAPG+    LPDD+GF FG+ SGG  SL +Q HYNN DG  G  DSSGVR+YYT+ELRP++MG++ LGDP   L   P+P+GKS   F CPG+CTE  F+EE VT+++H+LHMHENGQR+ TRQYR +  G+EVL+H AE EYYSFLQ+G +VV VNDS  IKKGD F TEC+YDTS SSV S +V +GLGSE+EM
Sbjct:  253 FVHHLVLTGFYGPPDCGNACFEWMDEMFGDGGSSYSSSDMTNIT------LPWFCNDLEDAADIFIWAPGMQSLDLPDDVGFLFGNESGGLNSLRVQVHYNNADGVSGKNDSSGVRVYYTEELRPMNMGLVKLGDPQGALHPQPLPDGKSVYSFGCPGTCTETYFEEEEVTVFSHLLHMHENGQRISTRQYRNDGDGNEVLIHTAEVEYYSFLQAGVHVVTVNDSTTIKKGDVFTTECYYDTSYSSVGSPNVTWGLGSENEM 508          
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: D7G216_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G216_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 2.750e-93
Identity = 154/289 (53.29%), Postives = 192/289 (66.44%), Query Frame = 1
Query:    1 YIHHLVLTAYTGSDDCGRSCEEWSDNSYYTTS-SNSSSTI--------------SYVTSEDGSEI-------------PSFC--VFEFASIFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
            Y+HHL+LT + G+ DCG++C EW D  + +   S+SSST+              S   S+D S +             PSFC    E A IF+WAPG ++ +LP D+GF  G+ SGG+ SL +QTHYNN DG  G  DSSGVR+YYT+ELRPI MGVL LGDP + L   P+P+GKSS  F CPG+C+E NF+EE VTI+ HVLHMHENGQR++T QYR +  G+E L+H  E  YYS LQ+G +VV VN S  IKKGD F T+C YDTSLSSV S +V FGLGSE EM
Sbjct:  251 YVHHLILTGFYGASDCGKACSEWLDEMFASEDGSDSSSTVEGGXXXXXXXXXSGSSYPSDDSSSVSFTEYFENLNITVPSFCSNYGEQADIFVWAPGTSNLELPGDVGFLLGNESGGFNSLNIQTHYNNPDGVSGKNDSSGVRVYYTEELRPIQMGVLKLGDPFIALSDQPLPDGKSSFSFGCPGTCSETNFEEEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELIHTTEVWYYSSLQAGAHVVTVNGSATIKKGDSFTTQCMYDTSLSSVGSANVTFGLGSEQEM 539          
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: A0A6H5K5A3_9PHAE (Cu2_monoox_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A3_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 1.750e-67
Identity = 114/207 (55.07%), Postives = 140/207 (67.63%), Query Frame = 1
Query:  229 IGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIK------------------------KGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
            +GFRFG+ S  YTSL ++TH NN DGD G VDSS VR+YYT+ +R +DMGV++LGDPNVDL G  +PEGKSSV F+CPG CTE   + E+VT+Y+H LHMH NGQR+ TRQYR +  G+E LV   E EYYSFLQ+GG+V   N S +I+                        KGD FET C+YDTSLSSV S +V FG GSE+ M
Sbjct:   19 VGFRFGNDS--YTSLRVETHNNNPDGDAGEVDSSSVRVYYTEGIREMDMGVITLGDPNVDLTGTKLPEGKSSVEFDCPGVCTETYLEAESVTVYSHFLHMHGNGQRMETRQYRSDSDGNEQLVDATEVEYYSFLQAGGHVTAHNGSDIIQYIHYLLPPNAFVLPCLAFVSVFLQKGDSFETTCYYDTSLSSVDSTNVTFGEGSEEGM 223          
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: D7FP36_ECTSI (Cu2_monoox_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP36_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 2.530e-54
Identity = 86/135 (63.70%), Postives = 107/135 (79.26%), Query Frame = 1
Query:  373 MGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
            MGV+ LGDP V L    +P+GKS+  F CP +CTE +F+EE VT+++H+LHMHENGQR++TRQYR +  G+EVL+H A+ EYYSFLQ+G +VV VNDS  IKKGD F TECFYDTS SSV S +V FGLGSE+EM
Sbjct:    1 MGVIKLGDPYVALESQTLPDGKSTFSFGCPSTCTETHFEEEEVTVFSHLLHMHENGQRMLTRQYRTDSDGNEVLLHTADVEYYSFLQAGAHVVSVNDSTTIKKGDVFTTECFYDTSYSSVDSSNVTFGLGSENEM 135          
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: A0A6U4MP62_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4MP62_HEMAN)

HSP 1 Score: 140 bits (353), Expect = 8.870e-35
Identity = 79/205 (38.54%), Postives = 115/205 (56.10%), Query Frame = 1
Query:  181 IFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPE----GKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDS-MLIKKGDRFETECFYDTSLSSVSSDS-VEFGLGSEDEM 777
            ++LW PGI     P + G R    +GG+ ++ +Q HY+N     G+VDSSG  I+YT++LR  D G+L LGDPN+ L   P+ E    G S +    P       ++ + VT++   +HMH+ G+R++TRQYR  +     LV     +YY F QSGG+  +   +   IKKGD F+ ECFY       S+D  + FGL S+DEM
Sbjct:  278 VWLWGPGIPGYVFPPEAGVRI--MTGGFQAIHIQIHYDNPTLISGLVDSSGFSIFYTNQLRQFDAGILQLGDPNILLFKQPIKEKDGSGYSHLTLTNPARDCTGKWEVDEVTVFERFMHMHKAGERMVTRQYRDGE-----LVRTDFCDYYDFFQSGGFSPRSTAAGFKIKKGDTFDVECFY------YSNDKMIRFGLASDDEM 469          
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: A0A1Z5JSD8_FISSO (DOMON domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSD8_FISSO)

HSP 1 Score: 134 bits (337), Expect = 2.110e-32
Identity = 75/199 (37.69%), Postives = 110/199 (55.28%), Query Frame = 1
Query:  181 IFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
            I+ WA G     LP D+G   G   G Y S  L+ HY+N    EG++DSSGVR YY++++RP+++G+L LGDP + L G PV +G +  +F+CP +CTE   K+E VT+    LHMH  G  +     R  +     ++H    +Y+ F Q G  +VK      +KKGD + T C YD    + +     FG  S++EM
Sbjct:  300 IYGWAKGEDPAALPLDVGLYIGP--GTYQSFRLEIHYDNPQLKEGVLDSSGVRFYYSEKMRPVELGLLRLGDPIISLEGQPVGDGLTQHIFDCPSTCTETMLKQE-VTVLREYLHMHYAGATMQNELIRDGE-----VIHTGTVDYFRFDQQGNQLVK-QMPYTVKKGDAYRTICNYDDKGRNAT-----FGFSSQEEM 484          
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: A0A1Y2BGD8_9FUNG (Peptidylglycine monooxygenase n=2 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BGD8_9FUNG)

HSP 1 Score: 119 bits (299), Expect = 2.160e-27
Identity = 78/196 (39.80%), Postives = 105/196 (53.57%), Query Frame = 1
Query:  190 WAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
            WAPGI    LP ++GF FG+ +       LQ HYNN +    ++DSSG+R++YT +LRP DMGVL LGD N ++ G   P   S+    CP +CT+      N+TI  +  HMH  GQ   TRQ R    G E++   A   YY F   GG +       +I  GD   T+C Y  +L+ V S+   FG  +EDEM
Sbjct:  214 WAPGIGLNVLPKEVGFPFGTGTNALRYFSLQIHYNNPNALSNIIDSSGMRLFYTTQLRPNDMGVLILGDTNFNISGND-PSYYSTQWNVCPTACTKQF--PTNLTIINNFFHMHMLGQNSTTRQIR---DGKEIVPLGA-VHYYDFNFQGG-LAPFQKGAVISPGDTLLTKCAYIPTLN-VRSNYTVFGESTEDEM 400          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD47_ECTSI7.100e-10059.23DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G337_ECTSI5.940e-9853.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G217_ECTSI3.380e-9652.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FP38_ECTSI2.970e-9456.87DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
D7G216_ECTSI2.750e-9353.29DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5K5A3_9PHAE1.750e-6755.07Cu2_monoox_C domain-containing protein n=1 Tax=Ect... [more]
D7FP36_ECTSI2.530e-5463.70Cu2_monoox_C domain-containing protein n=1 Tax=Ect... [more]
A0A6U4MP62_HEMAN8.870e-3538.54Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A1Z5JSD8_FISSO2.110e-3237.69DOMON domain-containing protein n=2 Tax=Fistulifer... [more]
A0A1Y2BGD8_9FUNG2.160e-2739.80Peptidylglycine monooxygenase n=2 Tax=Rhizoclosmat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1415contigH-elongata_contig1415:15308..16622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.5
Seed ortholog evalue2.4e-83
Seed eggNOG ortholog2880.D8LD47
EggNOG free text desc.octopamine biosynthetic process
EggNOG OGsKOG3568@1,KOG3568@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size780
Cds size780
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1415.2882.1prot_H-elongata_contig1415.2882.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1415 15308..16622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929841.8159158-CDS-H-elongata_contig1415:15307..154091622929841.8159158-CDS-H-elongata_contig1415:15307..15409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1415 15308..15409 -
1691679179.357594-CDS-H-elongata_contig1415:15307..154091691679179.357594-CDS-H-elongata_contig1415:15307..15409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1415 15308..15409 -
1622929841.8322146-CDS-H-elongata_contig1415:15624..158131622929841.8322146-CDS-H-elongata_contig1415:15624..15813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1415 15625..15813 -
1691679179.368154-CDS-H-elongata_contig1415:15624..158131691679179.368154-CDS-H-elongata_contig1415:15624..15813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1415 15625..15813 -
1622929841.8525965-CDS-H-elongata_contig1415:16133..166221622929841.8525965-CDS-H-elongata_contig1415:16133..16622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1415 16134..16622 -
1691679179.380016-CDS-H-elongata_contig1415:16133..166221691679179.380016-CDS-H-elongata_contig1415:16133..16622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1415 16134..16622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1415.2882.1

>prot_H-elongata_contig1415.2882.1 ID=prot_H-elongata_contig1415.2882.1|Name=mRNA_H-elongata_contig1415.2882.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp
YIHHLVLTAYTGSDDCGRSCEEWSDNSYYTTSSNSSSTISYVTSEDGSEI
PSFCVFEFASIFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNV
DGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVL
FECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVH
KAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVE
FGLGSEDEM*
back to top

mRNA from alignment at H-elongata_contig1415:15308..16622-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1415.2882.1 ID=mRNA_H-elongata_contig1415.2882.1|Name=mRNA_H-elongata_contig1415.2882.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1315bp|location=Sequence derived from alignment at H-elongata_contig1415:15308..16622- (Himanthalia elongata Himel1 dioecious)
TACATCCATCACCTCGTACTTACAGCCTACACAGGCAGCGACGACTGTGG CCGGTCTTGCGAGGAATGGTCCGACAATAGCTATTACACTACGAGCTCCA ATTCGTCCTCGACGATCTCATATGTTACATCAGAAGATGGGTCTGAAATT CCTTCCTTCTGTGTCTTCGAGTTCGCGTCCATCTTTCTCTGGGCTCCAGG AATAGCTGACGAACAACTTCCTGATGATATAGGCTTCCGGTTCGGCTCGA CCTCCGGTGGATATACGTCCCTAGAACTCCAGACGCACTACAACAACGTC GACGGAGATGAAGGGATGGTAGACAGCTCTGGAGTTCGGATATACTACAC GGACGAATTGCGCCCTATAGACATGGGTGTTTTGTCTCTTGGAGATCCCA ACGTAGACCTCCTTGGCGTTCCAGTACCGGAGGGGAAGTCGTCGGTATTG TTCGAATGCCCCGGCTCTTGTACCGAGAACAACTTCAAGGTATGTCCGCA CGCGCGAGTACGGCACGAGAGGACGGCGGGGTATATACCCACACCCTCTC GTTAGCTAAGGAGTTTTATCCGTCTAACTGTTTACCTTCTACCGCTCCAT GTATTGGCTTGGTGTATCGCTCGAGCGCGAATGGCCCCATAGCTTTGGTG GCACCAACCTGTCTTGGCTTCAGAGACGGTGCGCTGAACTAGCTTACGCT TCTCGTACGGATATCAATATGGCACAGCTTAGAAGTGTTGCAGCAGTAGT TCCAATGTCTCAAACTTGCTCTCTTCAAGTTGCTTCCGGGTTATCTTCTC TTATGATAGGAGGAGAACGTCACCATCTACGCCCACGTCCTACACATGCA CGAAAACGGACAACGGGTGATAACTCGTCAGTACCGCAAAAATGACAGCG GTAGTGAGGTGTTGGTGCACAAAGCCGAGGCTGAGTACTATTCCTTCTTA CAGTCCGGCGGATATGTGGTTAAGGTCAACGATAGCATGCTTATTAAGGT AATAACATTGCGATACGAGTGGGAGAACTATGTGTGGCTTTTTTCGGCAG TCGTGGACGAGACGGGGGATTACCCCATCTGCTTCGCATCAACAACAGGG TTCCTGTATAGTAGGATCATTGCGGCTTCTCGCTACCGTAATCACGACAC GCACCGGCCACCGCCGAACACACGCCAAATTTGCGTACTCCTTATAATTT CGTTATTCCACAGAAAGGAGACCGCTTCGAGACAGAATGCTTCTATGATA CGTCACTCTCCTCCGTTAGCTCGGATAGCGTCGAGTTCGGCTTGGGATCT GAAGACGAAATGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1415:15308..16622-

>mRNA_H-elongata_contig1415.2882.1 ID=mRNA_H-elongata_contig1415.2882.1|Name=mRNA_H-elongata_contig1415.2882.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig1415:15308..16622- (Himanthalia elongata Himel1 dioecious)
TACATCCATCACCTCGTACTTACAGCCTACACAGGCAGCGACGACTGTGG
CCGGTCTTGCGAGGAATGGTCCGACAATAGCTATTACACTACGAGCTCCA
ATTCGTCCTCGACGATCTCATATGTTACATCAGAAGATGGGTCTGAAATT
CCTTCCTTCTGTGTCTTCGAGTTCGCGTCCATCTTTCTCTGGGCTCCAGG
AATAGCTGACGAACAACTTCCTGATGATATAGGCTTCCGGTTCGGCTCGA
CCTCCGGTGGATATACGTCCCTAGAACTCCAGACGCACTACAACAACGTC
GACGGAGATGAAGGGATGGTAGACAGCTCTGGAGTTCGGATATACTACAC
GGACGAATTGCGCCCTATAGACATGGGTGTTTTGTCTCTTGGAGATCCCA
ACGTAGACCTCCTTGGCGTTCCAGTACCGGAGGGGAAGTCGTCGGTATTG
TTCGAATGCCCCGGCTCTTGTACCGAGAACAACTTCAAGTACATCCATCA
CCTCGTACTTACAGCCTACACAGGCAGCGACGACTGTGGCCGGTCTTGCG
AGGAATGGTCCGACAATAGCTATTACACTACGAGCTCCAATTCGTCCTCG
ACGATCTCATATGTTACATCAGAAGATGGGTCTGAAATTCCTTCCTTCTG
TGTCTTCGAGTTCGCGTCCATCTTTCTCTGGGCTCCAGGAATAGCTGACG
AACAACTTCCTGATGATATAGGCTTCCGGTTCGGCTCGACCTCCGGTGGA
TATACGTCCCTAGAACTCCAGACGCACTACAACAACGTCGACGGAGATGA
AGGGATGGTAGACAGCTCTGGAGTTCGGATATACTACACGGACGAATTGC
GCCCTATAGACATGGGTGTTTTGTCTCTTGGAGATCCCAACGTAGACCTC
CTTGGCGTTCCAGTACCGGAGGGGAAGTCGTCGGTATTGTTCGAATGCCC
CGGCTCTTGTACCGAGAACAACTTCAAGGAGGAGAACGTCACCATCTACG
CCCACGTCCTACACATGCACGAAAACGGACAACGGGTGATAACTCGTCAG
TACCGCAAAAATGACAGCGGTAGTGAGGTGTTGGTGCACAAAGCCGAGGC
TGAGTACTATTCCTTCTTACAGTCCGGCGGATATGTGGTTAAGGTCAACG
ATAGCATGCTTATTAAGGAGGAGAACGTCACCATCTACGCCCACGTCCTA
CACATGCACGAAAACGGACAACGGGTGATAACTCGTCAGTACCGCAAAAA
TGACAGCGGTAGTGAGGTGTTGGTGCACAAAGCCGAGGCTGAGTACTATT
CCTTCTTACAGTCCGGCGGATATGTGGTTAAGGTCAACGATAGCATGCTT
ATTAAGAAAGGAGACCGCTTCGAGACAGAATGCTTCTATGATACGTCACT
CTCCTCCGTTAGCTCGGATAGCGTCGAGTTCGGCTTGGGATCTGAAGACG
AAATGTAAAAAGGAGACCGCTTCGAGACAGAATGCTTCTATGATACGTCA
CTCTCCTCCGTTAGCTCGGATAGCGTCGAGTTCGGCTTGGGATCTGAAGA
CGAAATGTAA
back to top