mRNA_H-elongata_contig141327.2869.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: A0A7R9UQB3_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UQB3_DIALT) HSP 1 Score: 108 bits (270), Expect = 3.380e-26 Identity = 63/171 (36.84%), Postives = 93/171 (54.39%), Query Frame = 1
Query: 1 AKRTVQYMWHTKDVGITYG-GTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTF 510
A+R +QY+ T +G+ + G C L +ADAD+++ P ++ +G V ISW SG+Q I+ +S E+ +VAL+ E+ +LR + FL P I EDN G I + N + RRT+HV VK H VRDA E G + + V + H D++TKA TF
Sbjct: 44 ARRVLQYLRGTAQLGLLFKYGEDAECATLRAFADADWANDPVQRKSTTGYIVFFNGAPISWHSGLQSTISLSSCEAEYVALSECCREVDYLRSIIDFLPQPSASPTEIFEDNQGTIDLVNNPVHHRRTKHVEVKYHYVRDAQEKGRIVVSKVHTSLNHADIMTKATDNATF 214
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: A0A7R9UMU9_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UMU9_DIALT) HSP 1 Score: 108 bits (270), Expect = 4.560e-26 Identity = 63/171 (36.84%), Postives = 93/171 (54.39%), Query Frame = 1
Query: 1 AKRTVQYMWHTKDVGITYG-GTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTF 510
A+R +QY+ T +G+ + G C L +ADAD+++ P ++ +G V ISW SG+Q I+ +S E+ +VAL+ E+ +LR + FL P I EDN G I + N + RRT+HV VK H VRDA E G + + V + H D++TKA TF
Sbjct: 57 ARRVLQYLRGTAQLGLLFKYGEDAECATLRAFADADWANDPVQRKSTTGYIVFFNGAPISWHSGLQSTISLSSCEAEYVALSECCREVDYLRSIIDFLPQPSASPTEIFEDNQGTIDLVNNPVHHRRTKHVEVKYHYVRDAQEKGRIVVSKVHTSLNHADIMTKATDNATF 227
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: UPI001ABC465B (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001ABC465B) HSP 1 Score: 109 bits (273), Expect = 1.880e-25 Identity = 61/170 (35.88%), Postives = 100/170 (58.82%), Query Frame = 1
Query: 4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTFE 513
KR ++Y+ T D+GI + + T L ++DAD+ CP+T+R SG V LG ISW S Q ++ +S+E+ + A+ VV E +LRQ+ L+ +D V+ DN A+ ++ N + RRT+H+ + H VRD V +G +R+ +V + +Q D++TK L +FE
Sbjct: 204 KRILRYICGTMDLGIMLHAS--TDTVLTAYSDADWVGCPDTRRSTSGYCVFLGPSLISWSSKRQPTVSHSSTEAEYRAVANVVTECSWLRQLLQELSCHVDRATVVYRDNVSAVYLSANSVHHRRTKHIELDIHFVRDQVALGHIRVLHVPTSQQFADIMTKGLPTASFE 371
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: A0A7H4LAS3_WHEAT (Genome assembly, chromosome: II n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A7H4LAS3_WHEAT) HSP 1 Score: 107 bits (267), Expect = 2.780e-25 Identity = 58/170 (34.12%), Postives = 100/170 (58.82%), Query Frame = 1
Query: 4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTFE 513
KR ++Y+ T D+G+T + + + ++DAD++ CP+T+R SG V LG ISW S Q ++ +S+E+ + A+ VV E +LRQ+ L+ P+D ++ DN A+ ++ N + RRT+H+ + H VR+ V +G VR+ + + +Q D++TK L FE
Sbjct: 90 KRVLRYIRGTMDLGLTLHAS--TALDITAYSDADWTGCPDTRRSTSGYCVYLGPSLISWSSKRQPTVSRSSTEAEYRAVANVVAECSWLRQLLHELSCPVDKATIVYCDNVSAVYLSANPVHHRRTKHIELDIHFVREQVALGHVRVLHAPTSQQFADIMTKGLPTAHFE 257
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: UPI00098ABD7C (uncharacterized mitochondrial protein AtMg00810-like n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI00098ABD7C) HSP 1 Score: 108 bits (271), Expect = 5.600e-25 Identity = 59/170 (34.71%), Postives = 98/170 (57.65%), Query Frame = 1
Query: 4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTFE 513
KR + Y+ D+G+T + + T L + DAD+ CP+T+R SG + LG +SW S Q ++ +S+E+ + A+ VV E +LRQ+ L P+D V+ DN A+ ++ + + RRT+H+ + H VRD V +G VR+ +V + +Q D++TK L +FE
Sbjct: 222 KRILHYIRGAMDLGLTLRAS--TATDLVAYTDADWDGCPDTRRSTSGYCIFLGPSLVSWSSKRQPTVSRSSAEAEYRAVANVVAECSWLRQLLHELLCPVDKATVVYCDNVFAVYLSAHPVHHRRTKHIELDIHFVRDQVALGHVRVLHVPTSQQFADIMTKGLSTTSFE 389
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: UPI000BE5705B (uncharacterized protein LOC111256744 n=1 Tax=Setaria italica TaxID=4555 RepID=UPI000BE5705B) HSP 1 Score: 103 bits (256), Expect = 7.920e-24 Identity = 62/169 (36.69%), Postives = 94/169 (55.62%), Query Frame = 1
Query: 4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTF 510
KR ++Y+ T G+ G PV L ++DAD++ CP+++R SG V LG ISW S Q ++ +S+E+ + A+ V E +LRQ+ L I V+ DN A+ MA N + RRT+H+ + H VR+ V +G VR+ +V S Q D++TK L V F
Sbjct: 71 KRILRYLKGTLSSGLHLGVGPVQ--SLTAYSDADWAGCPDSRRSTSGYCVYLGDNLISWSSKRQTTVSRSSAEAEYRAVAHAVAECCWLRQLLEELHVSISSATVVYCDNVSAVYMAANPVHHRRTKHIEIDIHFVREKVALGQVRVLHVPSSHQFADIMTKGLPVQLF 237
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: UPI001ABC68EE (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001ABC68EE) HSP 1 Score: 105 bits (261), Expect = 8.170e-24 Identity = 59/170 (34.71%), Postives = 98/170 (57.65%), Query Frame = 1
Query: 4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTFE 513
KR ++Y+ T +G+T +P T L ++DAD++ CP+T+R SG V LG ISW S Q ++ +S+E+ + A+ V E +LRQ+ L + ++ DN A+ ++ N + RRT+H+ + H VR+ V +G +R+ +V + +Q DV+TK L TFE
Sbjct: 175 KRILRYIRGTTALGLTLTASP--STDLVAYSDADWAGCPDTRRSTSGYCVYLGPSLISWSSKRQPTVSPSSAEAEYRAMANAVAECSWLRQLLQELLLDVPKATIVYCDNVSAVCLSANHVHHRRTKHIELDIHFVREQVALGRIRVLHVPTAQQFADVMTKGLPTPTFE 342
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: A0A0A9B536_ARUDO (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9B536_ARUDO) HSP 1 Score: 102 bits (255), Expect = 3.910e-23 Identity = 62/169 (36.69%), Postives = 94/169 (55.62%), Query Frame = 1
Query: 4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTF 510
KR ++Y+ T G+ G PV L ++DAD++ CP+++R SG V LG ISW S Q ++ +S+E+ + A+ V E +LRQ+ L I V+ DN A+ MA N + RRT+H+ + H VR+ V +G VR+ +V S Q D++TK L V F
Sbjct: 142 KRILRYLKGTLSSGLHLGVGPVQ--SLTAYSDADWAGCPDSRRSTSGYCVYLGDNLISWSSKRQTTVSRSSAEAEYWAVAHAVAECCWLRQLLEELHVSIPSATVVYCDNVSAVYMAANPVHHRRTKHIEIDIHFVREKVALGQVRVLHVPSSHQFADIMTKGLPVQLF 308
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: Q6ATH4_ORYSJ (Putative polyprotein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6ATH4_ORYSJ) HSP 1 Score: 104 bits (260), Expect = 6.620e-23 Identity = 59/169 (34.91%), Postives = 95/169 (56.21%), Query Frame = 1
Query: 4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTF 510
KR ++Y+ T +G+ G TPV L ++DAD++ CP++ R SG V LG +SW S Q ++ +S+E+ + A+ + E +LRQ+ L + V+ DN A+ MA N + RRT+H+ + H VR+ V +G VR+ ++ S Q D++TK L V F
Sbjct: 1294 KRILRYIKGTLHIGLHLGTTPVD--SLTAYSDADWAGCPDSHRSTSGYCVFLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAIAECCWLRQLLSELHISLTSATVVYCDNVSAVYMAANPVHHRRTKHIEIDIHFVREKVALGQVRVLHLPSSHQFADIMTKGLPVQLF 1460
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: UPI00098B6346 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI00098B6346) HSP 1 Score: 103 bits (256), Expect = 8.230e-23 Identity = 58/170 (34.12%), Postives = 98/170 (57.65%), Query Frame = 1
Query: 4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTFE 513
KR ++Y+ T +G+T T + ++ ++DAD++ CP+T+R SG V LG ISW S Q + +S+E+ + A+ V E +LRQ+ L + V+ DN A+ ++ N + RRT+H+ + H VR+ V +G +R+ +V + +Q DV+TK L +TFE
Sbjct: 222 KRILRYIRGTMTLGLTL--TASTSLEMMAYSDADWAGCPDTRRSTSGYCVYLGPSLISWSSKRQPTVPRSSAEAEYRAVANAVAECTWLRQLLQELHHDVSQATVVYCDNVSAVYLSANPVHHRRTKHIELDIHFVREKVALGRIRVLHVPTAQQFADVMTKGLPTSTFE 389 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig141327.2869.1 >prot_H-elongata_contig141327.2869.1 ID=prot_H-elongata_contig141327.2869.1|Name=mRNA_H-elongata_contig141327.2869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp MWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAback to top mRNA from alignment at H-elongata_contig141327:85..597+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig141327.2869.1 ID=mRNA_H-elongata_contig141327.2869.1|Name=mRNA_H-elongata_contig141327.2869.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at H-elongata_contig141327:85..597+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig141327:85..597+ >mRNA_H-elongata_contig141327.2869.1 ID=mRNA_H-elongata_contig141327.2869.1|Name=mRNA_H-elongata_contig141327.2869.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig141327:85..597+ (Himanthalia elongata Himel1 dioecious)back to top |