mRNA_H-elongata_contig141063.2846.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141063.2846.1
Unique NamemRNA_H-elongata_contig141063.2846.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141063.2846.1 vs. uniprot
Match: D7G2B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B2_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.910e-13
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   70 RFVDPKTTLRDGYCNGGACVVNGRPFPSRFFGKLTV 177
            R VDP +TLRDGYC+GGAC VNG+PFPSRF GKL+V
Sbjct:   56 RVVDPLSTLRDGYCDGGACKVNGKPFPSRFAGKLSV 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141063.2846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2B2_ECTSI1.910e-1377.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141063contigH-elongata_contig141063:394..573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue3.4e-09
Seed eggNOG ortholog2880.D7G2B2
EggNOG OGs2E3VX@1,2SAVN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929838.579346-CDS-H-elongata_contig141063:393..5731622929838.579346-CDS-H-elongata_contig141063:393..573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141063 394..573 -
1691679178.1749952-CDS-H-elongata_contig141063:393..5731691679178.1749952-CDS-H-elongata_contig141063:393..573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141063 394..573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141063.2846.1prot_H-elongata_contig141063.2846.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141063 394..573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141063.2846.1

>prot_H-elongata_contig141063.2846.1 ID=prot_H-elongata_contig141063.2846.1|Name=mRNA_H-elongata_contig141063.2846.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
CSPTGGNCDFLSCHNPVCQGGSCRFVDPKTTLRDGYCNGGACVVNGRPFP
SRFFGKLTV*
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mRNA from alignment at H-elongata_contig141063:394..573-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141063.2846.1 ID=mRNA_H-elongata_contig141063.2846.1|Name=mRNA_H-elongata_contig141063.2846.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig141063:394..573- (Himanthalia elongata Himel1 dioecious)
TGCTCGCCAACAGGTGGAAACTGCGACTTTTTGTCCTGTCACAACCCGGT
CTGCCAAGGCGGGAGTTGCCGCTTCGTAGATCCAAAGACCACGCTGCGAG
ACGGCTACTGCAACGGGGGCGCCTGCGTGGTCAATGGCCGTCCCTTCCCC
TCTAGATTTTTCGGGAAGCTTACCGTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig141063:394..573-

>mRNA_H-elongata_contig141063.2846.1 ID=mRNA_H-elongata_contig141063.2846.1|Name=mRNA_H-elongata_contig141063.2846.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig141063:394..573- (Himanthalia elongata Himel1 dioecious)
TGCTCGCCAACAGGTGGAAACTGCGACTTTTTGTCCTGTCACAACCCGGT
CTGCCAAGGCGGGAGTTGCCGCTTCGTAGATCCAAAGACCACGCTGCGAG
ACGGCTACTGCAACGGGGGCGCCTGCGTGGTCAATGGCCGTCCCTTCCCC
TCTAGATTTTTCGGGAAGCTTACCGTCTGATGCTCGCCAACAGGTGGAAA
CTGCGACTTTTTGTCCTGTCACAACCCGGTCTGCCAAGGCGGGAGTTGCC
GCTTCGTAGATCCAAAGACCACGCTGCGAGACGGCTACTGCAACGGGGGC
GCCTGCGTGGTCAATGGCCGTCCCTTCCCCTCTAGATTTTTCGGGAAGCT
TACCGTCTGA
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