mRNA_H-elongata_contig140911.2835.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140911.2835.1
Unique NamemRNA_H-elongata_contig140911.2835.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig140911.2835.1 vs. uniprot
Match: D7FVN6_ECTSI (Guanyl nucleotide exchange factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVN6_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 4.710e-29
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1
Query:    1 ISCGAAHTACVTASGQLFIWGCGDGGRLGLGNERLGPQFEPVLVETLALAGGGLGSVSCGNAHTL 195
            ISCGAAHTACVTASG LFIWGCGDGGRLGLG ERLGPQ+EPVLVE+LA  G  +G+VSCGN+HTL
Sbjct:  218 ISCGAAHTACVTASGHLFIWGCGDGGRLGLGEERLGPQYEPVLVESLATGGQRIGAVSCGNSHTL 282          
BLAST of mRNA_H-elongata_contig140911.2835.1 vs. uniprot
Match: A0A8J2SRF7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRF7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.090e-19
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 ISCGAAHTACVTASGQLFIWGCGDGGRLGLGNERLGPQFEPVLVETLALAGGGLGSVSCGNAHTL 195
            +SCGAAHTA  T  G+LF+WGCGDGGRLGLG E L   + P  V+ L  AG  +G VSCGNAHTL
Sbjct:  783 VSCGAAHTAATTTDGELFVWGCGDGGRLGLGREGLATHWSPRRVDALFEAGHRIGDVSCGNAHTL 847          
BLAST of mRNA_H-elongata_contig140911.2835.1 vs. uniprot
Match: A0A7S3MGZ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGZ6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.030e-14
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 ISCGAAHTACVTASGQLFIWGCGDGGRLGLGNERLGPQFEPVLVETLALAGGGLGSVSCGNAHTLV 198
            +SCG+AH+A VT +G L+++GCGDGGRLGLG  +L  ++EP LVE+L      + SVSCGN  T+V
Sbjct:  122 LSCGSAHSAVVTEAGHLYVFGCGDGGRLGLGRGQLATRYEPTLVESLRHER--IASVSCGNVTTVV 185          
BLAST of mRNA_H-elongata_contig140911.2835.1 vs. uniprot
Match: A0A482S3L9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3L9_9ARCH)

HSP 1 Score: 75.1 bits (183), Expect = 3.070e-14
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 ISCGAAHTACVTASGQLFIWGCGDGGRLGLGNERLGPQFEPVLVETLALAGGGLGSVSCGNAHTLV 198
            ISCGAAH+A +T  GQL+++GCGDGGRLGLG  R G  + P LVE L      + SVSCGNA T+V
Sbjct:  662 ISCGAAHSAVITEMGQLYVFGCGDGGRLGLGYNRFGTCYVPTLVECLLHEK--ILSVSCGNATTIV 725          
BLAST of mRNA_H-elongata_contig140911.2835.1 vs. uniprot
Match: B8CDB6_THAPS (Guanyl nucleotide exchange factor (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDB6_THAPS)

HSP 1 Score: 70.9 bits (172), Expect = 3.040e-13
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 ISCGAAHTACVTASGQLFIWGCGDGGRLGLGNERLGPQFEPVLVETLALAGGGLGSVSCGNAHTL 195
            +SCG +HTACV  SG+++IWGCG+GGRLGLG +R+G Q  P +V++L      +  VSCG   TL
Sbjct:   98 VSCGYSHTACVGKSGEVYIWGCGNGGRLGLGLDRMGTQHTPAVVDSLRHER--IVDVSCGCYQTL 160          
BLAST of mRNA_H-elongata_contig140911.2835.1 vs. uniprot
Match: A0A024G428_9STRA (Uncharacterized protein n=4 Tax=Albugo candida TaxID=65357 RepID=A0A024G428_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.310e-12
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 ISCGAAHTACVTASGQLFIWGCGDGGRLGLGNERLGPQFEPVLVETLALAGGGLGSVSCGNAHTLV 198
            +SCGAAH    T +GQ+F+WGC +GGRLGLG +      +P LVETL  AG  +  ++CG AH+++
Sbjct:  803 VSCGAAHCGVTTETGQVFMWGCANGGRLGLGPDVKDHIAKPTLVETLYKAGVRVWQIACGTAHSVL 868          
BLAST of mRNA_H-elongata_contig140911.2835.1 vs. uniprot
Match: F0VYP9_9STRA (Regulator of chromosome condensation (RCC1) putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VYP9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 8.430e-12
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 ISCGAAHTACVTASGQLFIWGCGDGGRLGLGNERLGPQFEPVLVETLALAGGGLGSVSCGNAHTLV 198
            +SCGAAH    T  G+LF+WGC DGGRLGLG E      +P LVE L+  G  +  V+CG AH+++
Sbjct:  583 VSCGAAHCGLTTLDGKLFMWGCADGGRLGLGAEFHDYIAKPTLVEPLSKEGVRVRQVACGTAHSVL 648          
BLAST of mRNA_H-elongata_contig140911.2835.1 vs. uniprot
Match: A0A836CBD3_9STRA (Guanyl nucleotide exchange factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBD3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.560e-11
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 ISCGAAHTACVTASGQLFIWGCGDGGRLGLGNERLGPQ-FEPVLVETLALAGGGLGSVSCGNAHTLV 198
            +SCGAAHTA VT  GQL++WGC DGGRLGL     G   + P LVE+L      L  VSCG+AHTLV
Sbjct:  229 LSCGAAHTAAVTGEGQLWVWGCTDGGRLGLSPLPPGGAIWVPTLVESLLDERVAL--VSCGSAHTLV 293          
BLAST of mRNA_H-elongata_contig140911.2835.1 vs. uniprot
Match: A0A1V9ZNY5_9STRA (Regulator of chromosome condensation (RCC1) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZNY5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.540e-11
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 ISCGAAHTACVTASGQLFIWGCGDGGRLGLGNERLGPQFEPVLVETLALAGGGLGSVSCGNAHTLV 198
            ++CG AHT  V+  G+LF+WGC +GGRLGLG++ L     P  V++LA        VSCGN H+ +
Sbjct:  971 VACGRAHTGAVSTQGELFMWGCANGGRLGLGDQVLDEVAVPTFVKSLA-------HVSCGNTHSAI 1029          
BLAST of mRNA_H-elongata_contig140911.2835.1 vs. uniprot
Match: K3X146_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X146_GLOUD)

HSP 1 Score: 64.7 bits (156), Expect = 1.410e-10
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 ISCGAAHTACVTASGQLFIWGCGDGGRLGLGNERLGPQFEPVLVETLALAGGGLGSVSCGNAHTLV 198
            +SCGAAHT  VT +G+LF+WGC +GGRLGLGN  +     P LV  L      +  VSCG+ H+ V
Sbjct:  919 MSCGAAHTGAVTTTGELFMWGCANGGRLGLGNV-VDTVVVPTLVRELVAKKVRVWHVSCGSTHSAV 983          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140911.2835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVN6_ECTSI4.710e-2983.08Guanyl nucleotide exchange factor n=1 Tax=Ectocarp... [more]
A0A8J2SRF7_9STRA4.090e-1963.08Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3MGZ6_9STRA1.030e-1454.55Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482S3L9_9ARCH3.070e-1459.09Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
B8CDB6_THAPS3.040e-1352.31Guanyl nucleotide exchange factor (Fragment) n=1 T... [more]
A0A024G428_9STRA3.310e-1248.48Uncharacterized protein n=4 Tax=Albugo candida Tax... [more]
F0VYP9_9STRA8.430e-1250.00Regulator of chromosome condensation (RCC1) putati... [more]
A0A836CBD3_9STRA1.560e-1158.21Guanyl nucleotide exchange factor n=1 Tax=Tribonem... [more]
A0A1V9ZNY5_9STRA7.540e-1145.45Regulator of chromosome condensation (RCC1) n=1 Ta... [more]
K3X146_GLOUD1.410e-1050.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140911contigH-elongata_contig140911:829..1026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.1e-24
Seed eggNOG ortholog2880.D7FVN6
Preferred nameHERC1
KEGG koko:K10594
KEGG Pathwayko04120,map04120
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0008150,GO:0012505,GO:0016020,GO:0019899,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051020,GO:0065007,GO:0065009,GO:0098772
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Ec32 ortholog descriptionguanyl nucleotide exchange factor
Ec32 orthologEc-01_006060.1
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929837.3181965-CDS-H-elongata_contig140911:828..10261622929837.3181965-CDS-H-elongata_contig140911:828..1026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140911 829..1026 +
1691679177.6716177-CDS-H-elongata_contig140911:828..10261691679177.6716177-CDS-H-elongata_contig140911:828..1026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140911 829..1026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140911.2835.1prot_H-elongata_contig140911.2835.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140911 829..1026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140911.2835.1

>prot_H-elongata_contig140911.2835.1 ID=prot_H-elongata_contig140911.2835.1|Name=mRNA_H-elongata_contig140911.2835.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
ISCGAAHTACVTASGQLFIWGCGDGGRLGLGNERLGPQFEPVLVETLALA
GGGLGSVSCGNAHTLV
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mRNA from alignment at H-elongata_contig140911:829..1026+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140911.2835.1 ID=mRNA_H-elongata_contig140911.2835.1|Name=mRNA_H-elongata_contig140911.2835.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig140911:829..1026+ (Himanthalia elongata Himel1 dioecious)
ATAAGCTGTGGCGCGGCACACACCGCGTGTGTAACCGCGTCGGGGCAGCT CTTCATCTGGGGCTGTGGCGACGGTGGGCGCTTGGGACTGGGAAATGAGC GGTTGGGCCCTCAGTTTGAGCCAGTCCTCGTAGAAACGCTTGCTTTGGCG GGGGGGGGATTGGGCTCAGTCAGCTGCGGAAATGCGCATACTCTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig140911:829..1026+

>mRNA_H-elongata_contig140911.2835.1 ID=mRNA_H-elongata_contig140911.2835.1|Name=mRNA_H-elongata_contig140911.2835.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig140911:829..1026+ (Himanthalia elongata Himel1 dioecious)
ATAAGCTGTGGCGCGGCACACACCGCGTGTGTAACCGCGTCGGGGCAGCT
CTTCATCTGGGGCTGTGGCGACGGTGGGCGCTTGGGACTGGGAAATGAGC
GGTTGGGCCCTCAGTTTGAGCCAGTCCTCGTAGAAACGCTTGCTTTGGCG
GGGGGGGGATTGGGCTCAGTCAGCTGCGGAAATGCGCATACTCTGGTGAT
AAGCTGTGGCGCGGCACACACCGCGTGTGTAACCGCGTCGGGGCAGCTCT
TCATCTGGGGCTGTGGCGACGGTGGGCGCTTGGGACTGGGAAATGAGCGG
TTGGGCCCTCAGTTTGAGCCAGTCCTCGTAGAAACGCTTGCTTTGGCGGG
GGGGGGATTGGGCTCAGTCAGCTGCGGAAATGCGCATACTCTGGTG
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