mRNA_H-elongata_contig140709.2822.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140709.2822.1
Unique NamemRNA_H-elongata_contig140709.2822.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5K7J2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.830e-21
Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 258
            DE+V+++LPAGC D S + V+ +RA+YGL+++GRQW    +  +++  G EQ KADPCV+RK+VD  V +I+ ++VDD +V   D+
Sbjct:   27 DEEVFLRLPAGCGDKSHKVVMAERAIYGLKQSGRQWGYHAADTVVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDTLVAGSDE 111
[Close]
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5JC05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC05_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.760e-20
Identity = 37/84 (44.05%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:    4 EDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKD 255
            E++Y++ P GC  MSG+ V ++RA+YGL+++GR+W    +  L++  G EQ + DPCV+RKVVDGEV  ++ ++VDD++V   +
Sbjct:   57 EEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADE 139
[Close]
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5K2J9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.400e-20
Identity = 40/86 (46.51%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 258
            DE+V++KLPAGC D S +    +R++YGL+++GRQW    +  L++  G EQ KADPCV+RK+VD  V +I+ ++VDD++V   D+
Sbjct:   27 DEEVFLKLPAGCGDKSHKIAKAERSIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE 111
[Close]
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5K1V1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V1_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 7.720e-20
Identity = 42/86 (48.84%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 258
            DE+V++KLPAGC D S +    +RA+YGL+++GRQW    +  L++  G EQ KADPCV+RK+VD  V +I+ +HVDD++V   D+
Sbjct:  430 DEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIHVDDILVAGSDE 514
[Close]
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.430e-19
Identity = 42/86 (48.84%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 258
            DE+V++KLPAGC D S E    +RA+YGL+++GRQW    +  L++  G EQ KADPCV+RK+VD  V +I+ ++VDD++V   D+
Sbjct:  414 DEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE 498
[Close]
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5KMJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.470e-19
Identity = 41/86 (47.67%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 258
            DE+++++LPAGC D S + V  +RAVYGL+++GRQW    +  L++  G EQ KADPCV+RK+VD  V +I+ ++VDD++V   D+
Sbjct:  293 DEEIFLRLPAGCGDKSHKVVKAERAVYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE 377
[Close]
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.350e-19
Identity = 41/86 (47.67%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 258
            DE+V++KLPAGC D S +    +RA+YGL+++GRQW    +  L++  G EQ KADPCV+RK+VD  V +I+ ++VDD++V   D+
Sbjct:  160 DEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE 244
[Close]
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5KKQ0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ0_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.410e-19
Identity = 35/85 (41.18%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:    4 EDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 258
            ED+Y++LP GC   +G+AV ++RA+YGL+++GR+W    +  L+   G EQ + DPC++RKVVDGE+  ++ ++VDD++++  ++
Sbjct:   28 EDIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISN-GYEQCRVDPCIFRKVVDGELVGLIVINVDDIMLSATEE 111
[Close]
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.990e-19
Identity = 41/86 (47.67%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 258
            DE+V++KLPAGC D S +    +RA+YGL+++GRQW    +  L++  G EQ KADPCV+RK+VD  V +I+ ++VDD++V   D+
Sbjct:  451 DEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE 535
[Close]
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 5.000e-19
Identity = 41/86 (47.67%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 258
            DE+V++KLPAGC D S +    +RA+YGL+++GRQW    +  L++  G EQ KADPCV+RK+VD  V +I+ ++VDD++V   D+
Sbjct:  521 DEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE 605
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7J2_9PHAE3.830e-2146.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC05_9PHAE2.760e-2044.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2J9_9PHAE3.400e-2046.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1V1_9PHAE7.720e-2048.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE1.430e-1948.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMJ1_9PHAE2.470e-1947.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFN5_9PHAE4.350e-1947.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKQ0_9PHAE4.410e-1941.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE4.990e-1947.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JU90_9PHAE5.000e-1947.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140709contigH-elongata_contig140709:1297..1554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.9
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog28532.XP_010526678.1
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.199262-CDS-H-elongata_contig140709:1296..15541622929836.199262-CDS-H-elongata_contig140709:1296..1554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140709 1297..1554 -
1691679177.216966-CDS-H-elongata_contig140709:1296..15541691679177.216966-CDS-H-elongata_contig140709:1296..1554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140709 1297..1554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140709.2822.1prot_H-elongata_contig140709.2822.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140709 1297..1554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140709.2822.1

>prot_H-elongata_contig140709.2822.1 ID=prot_H-elongata_contig140709.2822.1|Name=mRNA_H-elongata_contig140709.2822.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGM
EQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK
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mRNA from alignment at H-elongata_contig140709:1297..1554-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140709.2822.1 ID=mRNA_H-elongata_contig140709.2822.1|Name=mRNA_H-elongata_contig140709.2822.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig140709:1297..1554- (Himanthalia elongata Himel1 dioecious)
GACGAAGATGTATACATCAAGCTTCCCGCTGGTTGCGAGGACATGAGCGG
TGAAGCCGTTCTGCTGCAACGTGCAGTGTACGGACTCCGAGAGGCTGGTA
GACAATGGAATTTGCGGCTTAGTAGGGTGCTCCTGCAACAAATTGGCATG
GAGCAGAGTAAGGCCGACCCGTGTGTGTACCGGAAGGTCGTAGATGGGGA
GGTAACCCTCATTGTATATGTTCATGTTGACGACCTCGTCGTCACCACAA
AGGATAAG
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Coding sequence (CDS) from alignment at H-elongata_contig140709:1297..1554-

>mRNA_H-elongata_contig140709.2822.1 ID=mRNA_H-elongata_contig140709.2822.1|Name=mRNA_H-elongata_contig140709.2822.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig140709:1297..1554- (Himanthalia elongata Himel1 dioecious)
GACGAAGATGTATACATCAAGCTTCCCGCTGGTTGCGAGGACATGAGCGG
TGAAGCCGTTCTGCTGCAACGTGCAGTGTACGGACTCCGAGAGGCTGGTA
GACAATGGAATTTGCGGCTTAGTAGGGTGCTCCTGCAACAAATTGGCATG
GAGCAGAGTAAGGCCGACCCGTGTGTGTACCGGAAGGTCGTAGATGGGGA
GGTAACCCTCATTGTATATGTTCATGTTGACGACCTCGTCGTCACCACAA
AGGATAAGGACGAAGATGTATACATCAAGCTTCCCGCTGGTTGCGAGGAC
ATGAGCGGTGAAGCCGTTCTGCTGCAACGTGCAGTGTACGGACTCCGAGA
GGCTGGTAGACAATGGAATTTGCGGCTTAGTAGGGTGCTCCTGCAACAAA
TTGGCATGGAGCAGAGTAAGGCCGACCCGTGTGTGTACCGGAAGGTCGTA
GATGGGGAGGTAACCCTCATTGTATATGTTCATGTTGACGACCTCGTCGT
CACCACAAAGGATAAG
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