mRNA_H-elongata_contig10338.282.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10338.282.1
Unique NamemRNA_H-elongata_contig10338.282.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.320e-45
Identity = 93/235 (39.57%), Postives = 132/235 (56.17%), Query Frame = 1
Query:    7 MTSNRWTSCSNDTYHSFTASFIDDEFDMHELAMYCKKSSGKTAGTDLADNVKGLIDSYDMARRVTAAVTDCEPSMISNGCLEEL------------------------------------------------------CGILKVPSLQVVQSVETRWNSTFSSVERTRQLRDAIQLHDRLDNIAPLLTDDDWEVLKLI*PIIRPFIKARRELEGAKYVTGSLVVPYAHDLRRGLE 549
            +T++ WTS SN++Y S T ++ID  + +H L++ C K +G T G DLA  +  +I+ + +  RVTA VTDCEPSM+  G L E+                                                       GILK+  L V+Q VETRW S+++ +ER   L  AI+LH+  DNIAP+L++ DWEVL+LI PI+RPF++A+++LEGAKYVTGS+ VP   +LR GLE
Sbjct:   79 ITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLGALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLE 313          
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 3.630e-27
Identity = 56/101 (55.45%), Postives = 77/101 (76.24%), Query Frame = 1
Query:  247 LEELCGILKVPSLQVVQSVETRWNSTFSSVERTRQLRDAIQLHDRLDNIAPLLTDDDWEVLKLI*PIIRPFIKARRELEGAKYVTGSLVVPYAHDLRRGLE 549
            L +LCGIL++  L V+Q VETRW ST++ V R   L  AI+LH+ +D + PLL+D DWEVL+LI PI+RPF+KA+++LEGA+YVTGS+ +    +LR GLE
Sbjct:  177 LVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLE 277          
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.230e-16
Identity = 51/144 (35.42%), Postives = 74/144 (51.39%), Query Frame = 1
Query:    7 MTSNRWTSCSNDTYHSFTASFIDDEFDMHELAMYCKKSSGKTAGTDLADNVKGLIDSYDMARRVTAAVTDCEPSMISNG-CLEELCGILKV---------------------PSLQVVQSVETRWNSTFSSVERTRQLRDAIQL 372
            +TS+ WTS SNDTY  FT ++I   FD+  L + CKK  G+T G DL + VK +I    +  R  A  TDCEPSM+  G  LEE  G+  +                      +L + + V TR+N +  + +R  Q+RD +Q+
Sbjct:   52 VTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQV 195          
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.220e-13
Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 1
Query:    7 MTSNRWTSCSNDTYHSFTASFIDDEFDMHELAMYCKKSSGKTAGTDLADNVKGLIDSYDMARRVTAAVTDCEPSMISNG-CLEELCGILKV---------------------PSLQVVQSVETRWNSTFSSVERTRQLRDAIQL 372
            +TS+ WT  SNDTY SFT ++I   FD+  L + CKK   +TAG DL + VK +I    +  R  A  TDCE SM+  G  LEE  G+  +                      +L + + V TR+  +  + +R  Q+ D +Q+
Sbjct:    8 LTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQV 151          
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: UPI001F9F4A45 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F9F4A45)

HSP 1 Score: 71.2 bits (173), Expect = 2.810e-11
Identity = 42/122 (34.43%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  196 VTAAVTDCEPSMI----SNGCLEELCGILK---VPSLQVVQSVETRWNSTFSSVERTRQLRDAIQLHDRLDNIAPLLTDDDWEVLKLI*PIIRPFIKARRELEGAKYVTGSLVVPYAHDLRR 540
            VTAA+T C+        SN   +EL  I K     +L++ Q   TRWNSTF  +ER  Q+++++ ++   +N  PLLT ++W ++K +  ++RPF +  +EL  A  V+ S V+P    L +
Sbjct:    7 VTAAITKCKKIATHFHHSNSAQDELANIQKRLLQKTLKIKQECTTRWNSTFHMLERILQVKESVCIYASTNNKIPLLTSEEWMIIKKLSGVLRPFDELTKELSSAD-VSISSVIPLIATLEK 127          
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: A0A8J5CJE7_CHIOP (Zinc finger BED domain-containing protein 1 n=2 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J5CJE7_CHIOP)

HSP 1 Score: 67.0 bits (162), Expect = 1.030e-9
Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = 1
Query:  181 DMARRVTAAVTDCEPSMISNGCL---EELCGILKVPSLQVVQSVETRWNSTFSSVERTRQLRDAIQ---LHDRLDNIAPLLTDDDWEVLKLI*PIIRPFIKARRELEGAKYVTGSLVVPYAHDLR 537
            D+  +V   VT    S+ S+  L   +   G+L VP L+++Q+V+TRWNSTF S++R  +L   +    L        P+LT ++  V   +  ++ PF KA +E+ G KYVT S+V+P  + LR
Sbjct:   83 DVIEKVKQIVTYFRRSISSSDALRAAQRQKGVL-VP-LELIQAVQTRWNSTFYSLQRFAELAGCVSQVLLSKDHRTAPPMLTSEELAVANYLVAVLGPFDKATKEISGEKYVTASIVLPMVNCLR 205          
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.810e-9
Identity = 43/137 (31.39%), Postives = 64/137 (46.72%), Query Frame = 1
Query:   28 SCSNDTYHSFTASFIDDEFDMHELAMYCKKSSGKTAGTDLADNVKGLIDSYDMARRVTAAVTDCEPSMISNG-CLEELCGILKV---------------------PSLQVVQSVETRWNSTFSSVERTRQLRDAIQL 372
            S SNDTY +FT ++I   FD+  L +  KK  G+T G DL + VK +I    +  R  A  TDCEP M+  G  LEE  G+  +                      +L + + V TR+  +  +  R  Q+ D +Q+
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQV 139          
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: UPI001896C2EA (zinc finger BED domain-containing protein 4-like n=2 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI001896C2EA)

HSP 1 Score: 66.2 bits (160), Expect = 2.040e-9
Identity = 40/148 (27.03%), Postives = 70/148 (47.30%), Query Frame = 1
Query:   91 HELAMYCKKSSGKTAGTD-LADNVKGLIDSYDMARRVTAAVTDCEPSMISNGCLEELCGILKVPSLQVVQSVETRWNSTFSSVERTRQLRDAIQLH-DRLDNIAPLLTDDDWEVLKLI*PIIRPFIKARRELEGAKYVTGSLVVPYAH 528
            H L +  K +  +TAG   +    + ++  Y  + +  A + DC+  M             ++  L+++Q VETRWNS    + R  QL++A+ L     +   P LT  +W+ +  +   + P   A ++L G KY T S VVP+ +
Sbjct:  162 HTLQLAIKDAKEETAGVPAILKKCRAIVGHYKHSAQAAARLPDCQRRM-------------ELSVLELIQDVETRWNSEHDMLSRLVQLKEAVCLELATSETTVPNLTPQEWKAVAGLIKALEPIASATKDLSGQKYATLSSVVPFLY 296          
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: A0A7S3B5R8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B5R8_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 8.600e-9
Identity = 44/160 (27.50%), Postives = 74/160 (46.25%), Query Frame = 1
Query:   91 HELAMYCKKSSGKTAGTDLADNVKGLIDSYDMARRVTAAVTDCEPSMISNGCLEELCGILKVPSLQVVQSVETRWNSTFSSVERTRQLRDAIQLHDRLDNIAPLLTD---------DDWEVLKLI*PIIRPFIKARRELEGAKYVTGSLVVPYAHDLRRG 543
            H L +  KK +G     +     KG++  +    R T+ + D          +++ CG+   P  Q +Q V TRW S++  V+  R+ + A+Q++D       +  D          DW + +    ++ P  +A + LEG KYVT SLV+PY + L  G
Sbjct:   16 HTLELSVKKYTGADGIKETFSRDKGIVGYF---HRSTSGIQDLTT-------IQKACGL---PEKQPIQDVVTRWFSSYGMVDWFREQQQAVQMYDVKHGAEAVKNDAYKDNRLQHKDWAINEQSVAVLAPVAQATKLLEGTKYVTISLVLPYTYRLIEG 162          
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: UPI0018993B21 (zinc finger BED domain-containing protein 4-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI0018993B21)

HSP 1 Score: 63.9 bits (154), Expect = 1.210e-8
Identity = 39/148 (26.35%), Postives = 69/148 (46.62%), Query Frame = 1
Query:   91 HELAMYCKKSSGKTAGTD-LADNVKGLIDSYDMARRVTAAVTDCEPSMISNGCLEELCGILKVPSLQVVQSVETRWNSTFSSVERTRQLRDAIQLH-DRLDNIAPLLTDDDWEVLKLI*PIIRPFIKARRELEGAKYVTGSLVVPYAH 528
            H L +  K +  +TAG   +    + ++  Y  + +  A + DC+  M             ++  L+++Q VETRWNS    + R  QL++A+ L     +   P LT  +W+ +  +   + P   A ++L G KY T   VVP+ +
Sbjct:  162 HTLQLAIKDAKEETAGVPAILKKCRAIVGHYKHSAQAAARLQDCQRRM-------------ELSVLELIQDVETRWNSEHDMLSRLVQLKEAVCLELATSETTVPNLTPQEWKAVAGLVKALEPIASATKDLSGQKYATLLSVVPFLY 296          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUY5_9PHAE2.320e-4539.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI3.630e-2755.45Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JJV8_9PHAE1.230e-1635.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE8.220e-1333.33Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
UPI001F9F4A452.810e-1134.43Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
A0A8J5CJE7_CHIOP1.030e-935.20Zinc finger BED domain-containing protein 1 n=2 Ta... [more]
A0A6H5KVI1_9PHAE1.810e-931.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001896C2EA2.040e-927.03zinc finger BED domain-containing protein 4-like n... [more]
A0A7S3B5R8_9EUKA8.600e-927.50Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
UPI0018993B211.210e-826.35zinc finger BED domain-containing protein 4-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10338contigH-elongata_contig10338:6645..7364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue6.7e-27
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size561
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10338.282.1prot_H-elongata_contig10338.282.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10338 6765..7358 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929569.1034143-UTR-H-elongata_contig10338:6644..67641622929569.1034143-UTR-H-elongata_contig10338:6644..6764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10338 6645..6764 -
1691679074.2488992-UTR-H-elongata_contig10338:6644..67641691679074.2488992-UTR-H-elongata_contig10338:6644..6764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10338 6645..6764 -
1622929569.1398902-UTR-H-elongata_contig10338:7358..73641622929569.1398902-UTR-H-elongata_contig10338:7358..7364Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10338 7359..7364 -
1691679074.2839358-UTR-H-elongata_contig10338:7358..73641691679074.2839358-UTR-H-elongata_contig10338:7358..7364Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10338 7359..7364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929569.1169431-CDS-H-elongata_contig10338:6764..69711622929569.1169431-CDS-H-elongata_contig10338:6764..6971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10338 6765..6971 -
1691679074.2665346-CDS-H-elongata_contig10338:6764..69711691679074.2665346-CDS-H-elongata_contig10338:6764..6971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10338 6765..6971 -
1622929569.1280746-CDS-H-elongata_contig10338:7130..73581622929569.1280746-CDS-H-elongata_contig10338:7130..7358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10338 7131..7358 -
1691679074.2741716-CDS-H-elongata_contig10338:7130..73581691679074.2741716-CDS-H-elongata_contig10338:7130..7358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10338 7131..7358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10338.282.1

>prot_H-elongata_contig10338.282.1 ID=prot_H-elongata_contig10338.282.1|Name=mRNA_H-elongata_contig10338.282.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
MTSNRWTSCSNDTYHSFTASFIDDEFDMHELAMYCKKSSGKTAGTDLADN
VKGLIDSYDMARRVTAAVTDCEPSMISNGCLEELCGILKVPSLQVVQSVE
TRWNSTFSSVERTRQLRDAIQLHDRLDNIAPLLTDDDWEVLKLI*
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mRNA from alignment at H-elongata_contig10338:6645..7364-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10338.282.1 ID=mRNA_H-elongata_contig10338.282.1|Name=mRNA_H-elongata_contig10338.282.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=720bp|location=Sequence derived from alignment at H-elongata_contig10338:6645..7364- (Himanthalia elongata Himel1 dioecious)
GCCACGATGACTTCAAATAGGTGGACGTCATGTTCCAACGACACCTACCA CTCCTTCACCGCCTCCTTCATTGATGACGAGTTCGACATGCACGAGCTTG CGATGTACTGCAAGAAAAGTAGCGGGAAAACTGCAGGAACGGACCTTGCG GACAACGTCAAAGGTCTGATAGATTCCTATGATATGGCCAGGCGCGTCAC TGCTGCTGTAACTGACTGCGAACCGTCAATGATTGTGTACGGCCGGGAGC TCGAAGAAAAGGACATCACGACTCACATAGGCTGCTGCAACCACTGATTC GTGTGCACCACTGCGCTGGGCTTCAAACGGACCGGGGGTGAAGAGGACCA TGGCACTCCGACGGGCACTCGTTACCCAGTACACGAACTCAAGTCAAATG GCTGCCTCGAAGAGTTGTGTGGGATACTCAAGGTGCCTTCGCTGCAGGTG GTGCAGAGTGTGGAGACTAGGTGGAACTCAACATTTAGTTCTGTAGAGCG TACAAGGCAACTGCGCGACGCAATCCAACTGCACGATCGCCTCGACAACA TAGCACCACTGCTGACAGATGACGACTGGGAGGTGCTGAAGTTGATCTAG CCTATTATTAGGCCTTTTATAAAGGCACGTAGGGAGTTGGAGGGCGCAAA GTACGTCACAGGAAGCTTGGTGGTCCCCTACGCCCATGACCTCCGCCGCG GGCTTGAGAAGATGAGGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig10338:6645..7364-

>mRNA_H-elongata_contig10338.282.1 ID=mRNA_H-elongata_contig10338.282.1|Name=mRNA_H-elongata_contig10338.282.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig10338:6645..7364- (Himanthalia elongata Himel1 dioecious)
ATGACTTCAAATAGGTGGACGTCATGTTCCAACGACACCTACCACTCCTT
CACCGCCTCCTTCATTGATGACGAGTTCGACATGCACGAGCTTGCGATGT
ACTGCAAGAAAAGTAGCGGGAAAACTGCAGGAACGGACCTTGCGGACAAC
GTCAAAGGTCTGATAGATTCCTATGATATGGCCAGGCGCGTCACTGCTGC
TGTAACTGACTGCGAACCGTCAATGATTATGACTTCAAATAGGTGGACGT
CATGTTCCAACGACACCTACCACTCCTTCACCGCCTCCTTCATTGATGAC
GAGTTCGACATGCACGAGCTTGCGATGTACTGCAAGAAAAGTAGCGGGAA
AACTGCAGGAACGGACCTTGCGGACAACGTCAAAGGTCTGATAGATTCCT
ATGATATGGCCAGGCGCGTCACTGCTGCTGTAACTGACTGCGAACCGTCA
ATGATTTCAAATGGCTGCCTCGAAGAGTTGTGTGGGATACTCAAGGTGCC
TTCGCTGCAGGTGGTGCAGAGTGTGGAGACTAGGTGGAACTCAACATTTA
GTTCTGTAGAGCGTACAAGGCAACTGCGCGACGCAATCCAACTGCACGAT
CGCCTCGACAACATAGCACCACTGCTGACAGATGACGACTGGGAGGTGCT
GAAGTTGATCTAGTCAAATGGCTGCCTCGAAGAGTTGTGTGGGATACTCA
AGGTGCCTTCGCTGCAGGTGGTGCAGAGTGTGGAGACTAGGTGGAACTCA
ACATTTAGTTCTGTAGAGCGTACAAGGCAACTGCGCGACGCAATCCAACT
GCACGATCGCCTCGACAACATAGCACCACTGCTGACAGATGACGACTGGG
AGGTGCTGAAGTTGATCTAG
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