mRNA_H-elongata_contig139968.2784.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139968.2784.1
Unique NamemRNA_H-elongata_contig139968.2784.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A7R9VUK9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VUK9_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 6.630e-10
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   46 MKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALFRK--KTGLSLVTPNPTRFATNLISAMRTFKVR 270
            M C+ H +DLL+EDI K +WAA+II+   +V+K+ K H +T    R+  K  L L+ P  TRF T  +   R  + R
Sbjct:   38 MPCAVHCIDLLLEDIGKLDWAAEIIEEGKDVVKYFKAHQWTLGELRQISKVKLELLLPGDTRFGTEFLMVSRAVEKR 114          
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A7R9V4L6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V4L6_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 6.450e-9
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   46 MKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALFRK-KTGLSLVTPNPTRFATNLISAMRTFKVR 270
            + C+AH +DLL+EDI K  WAA +++    V+KF++ H +  AL R   +   L+ P  TRF T+ +   R  + R
Sbjct:   17 LPCAAHCLDLLLEDIGKLPWAAQLVEHGRSVVKFIRGHEWCLALVRSIGSKKELLFPGETRFGTHYLMLSRLVEKR 92          
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: UPI001AD930D2 (uncharacterized protein LOC121049819 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD930D2)

HSP 1 Score: 60.1 bits (144), Expect = 7.780e-9
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1
Query:   31 CRLTGMKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALFRKKTGLSLVTPNPTRFATNLIS 246
            C L  ++C+AH +DL+ EDI KQE  + ++K    V  ++ NH +  A  R  T   L+ P  TRFATN I+
Sbjct:  153 CPLFWIRCAAHCIDLIFEDIGKQETVSTVVKWAQSVTNYIYNHGWVLAEMRSITKGDLIRPGKTRFATNHIA 224          
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A7R9YWY1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YWY1_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 2.030e-8
Identity = 30/79 (37.97%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   46 MKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALFRK--KTGLS--LVTPNPTRFATNLISAMRTFKVR 270
            + CSAH +DLL+EDI K  WAA +++    ++K+V++H +++AL R+  +TG    L++P  TRF T  +   R  + R
Sbjct:  133 LPCSAHCLDLLLEDIGKLTWAAKMVETGRFIVKYVRSHEWSNALVRQYARTGSKKELLSPGDTRFGTEYLMLSRLVEKR 211          
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A388L851_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L851_CHABU)

HSP 1 Score: 59.7 bits (143), Expect = 2.130e-8
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   28 LCRLTGMKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALF------RKKTGLSLVTPNPTRFA 231
            + ++  + C+AH + LL++DI+K  W + I+KR   ++KF+KNHH T ALF       KKT   LV P   RFA
Sbjct:  260 IAKIPRVPCAAHTLSLLLKDISKLSWVSKIVKRAKMMVKFIKNHHRTVALFSACSFEEKKT---LVMPTEVRFA 330          
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A388K5Z3_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K5Z3_CHABU)

HSP 1 Score: 57.8 bits (138), Expect = 1.020e-7
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   28 LCRLTGMKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALFRK---KTGLSLVTPNPTRFA 231
            + R+  + C+AH + LL++ IAK  W A I+KR   ++KF++NHH T ALF     +   +L+ P   RFA
Sbjct:  380 IARIPWVPCAAHTLSLLLKGIAKLSWVATIVKRVKMMVKFIRNHHCTVALFSACSLEEMKTLIMPTKVRFA 450          
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A388LPK1_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LPK1_CHABU)

HSP 1 Score: 56.6 bits (135), Expect = 2.500e-7
Identity = 28/68 (41.18%), Postives = 37/68 (54.41%), Query Frame = 1
Query:   43 GMKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNH-HFTSALFRKKTGLSLVTPNPTRFATNLI 243
             M C+AH++DL++E   K  W   I+K++ EV+KF  NH      L     G  L  P  TRFATN I
Sbjct:  243 SMPCTAHSIDLMLEQFGKIGWVDVILKKSAEVVKFFMNHTRVRDLLLVNSQGAILARPGATRFATNFI 310          
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A388KTL1_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KTL1_CHABU)

HSP 1 Score: 56.6 bits (135), Expect = 2.520e-7
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   52 CSAHAVDLLMEDIAKQ-EWAADIIKRNLEVIKFVKNHHFTSALFRKKTG-LSLVTPNPTRFATNLI 243
            C+AHA+DL +ED+ K   W A+I+KR   + KFV NH     LF  K+G + +  P  TRFATN+I
Sbjct:  250 CTAHALDLALEDMDKHIPWFAEIVKRGNVLGKFVMNHDKVRTLFLTKSGGVQIKRPGVTRFATNII 315          
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A388M3U7_CHABU (Integrase catalytic domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M3U7_CHABU)

HSP 1 Score: 56.6 bits (135), Expect = 2.610e-7
Identity = 29/70 (41.43%), Postives = 37/70 (52.86%), Query Frame = 1
Query:   46 MKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALFRKKTGLSLVTPNPTRFATNLISAMR 255
            ++C AH +DL++EDI    W A  I +   V KF K H        KKT L L+ P  TRF TN+I   R
Sbjct:  555 IRCVAHVMDLILEDIGSIGWVASRIAQARLVTKFFKRHSHAREALEKKTKLKLLLPAETRFGTNVIMIRR 624          
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Match: A0A388KII2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KII2_CHABU)

HSP 1 Score: 56.6 bits (135), Expect = 2.620e-7
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   28 LCRLTGMKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFVKNHHFTSALFRK---KTGLSLVTPNPTRF 228
            + R+  + C+AH + LL++ IAK  W A I+KR   ++KF++NHH T ALF     +   +L+ P   RF
Sbjct:  744 IARIPXVXCAAHTLSLLLKGIAKLPWVATIVKRVKMMVKFIRNHHRTMALFSACSLEETKTLIMPTXVRF 813          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139968.2784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9VUK9_9CHLO6.630e-1040.26Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7R9V4L6_9CHLO6.450e-936.84Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
UPI001AD930D27.780e-940.28uncharacterized protein LOC121049819 n=1 Tax=Rosa ... [more]
A0A7R9YWY1_9CHLO2.030e-837.97Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A388L851_CHABU2.130e-841.89Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388K5Z3_CHABU1.020e-739.44DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388LPK1_CHABU2.500e-741.18DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388KTL1_CHABU2.520e-746.97DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388M3U7_CHABU2.610e-741.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A388KII2_CHABU2.620e-738.57Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139968contigH-elongata_contig139968:894..1163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929832.2280252-CDS-H-elongata_contig139968:893..11631622929832.2280252-CDS-H-elongata_contig139968:893..1163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139968 894..1163 -
1691679175.777221-CDS-H-elongata_contig139968:893..11631691679175.777221-CDS-H-elongata_contig139968:893..1163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139968 894..1163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139968.2784.1prot_H-elongata_contig139968.2784.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139968 894..1163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139968.2784.1

>prot_H-elongata_contig139968.2784.1 ID=prot_H-elongata_contig139968.2784.1|Name=mRNA_H-elongata_contig139968.2784.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
VLVYPPPLLLCRLTGMKCSAHAVDLLMEDIAKQEWAADIIKRNLEVIKFV
KNHHFTSALFRKKTGLSLVTPNPTRFATNLISAMRTFKVR
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mRNA from alignment at H-elongata_contig139968:894..1163-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139968.2784.1 ID=mRNA_H-elongata_contig139968.2784.1|Name=mRNA_H-elongata_contig139968.2784.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig139968:894..1163- (Himanthalia elongata Himel1 dioecious)
GTGCTTGTCTATCCCCCGCCGTTGCTGTTGTGCAGGTTGACTGGCATGAA GTGTAGCGCGCACGCAGTCGACCTCCTGATGGAGGACATCGCGAAGCAGG AGTGGGCCGCGGACATCATCAAGCGCAACCTCGAAGTCATCAAGTTCGTC AAGAACCACCACTTCACCAGTGCTCTCTTCCGAAAGAAGACGGGCCTGTC ACTCGTCACGCCCAACCCCACACGGTTTGCGACTAACCTGATCTCCGCCA TGCGCACCTTCAAGGTGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig139968:894..1163-

>mRNA_H-elongata_contig139968.2784.1 ID=mRNA_H-elongata_contig139968.2784.1|Name=mRNA_H-elongata_contig139968.2784.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig139968:894..1163- (Himanthalia elongata Himel1 dioecious)
GTGCTTGTCTATCCCCCGCCGTTGCTGTTGTGCAGGTTGACTGGCATGAA
GTGTAGCGCGCACGCAGTCGACCTCCTGATGGAGGACATCGCGAAGCAGG
AGTGGGCCGCGGACATCATCAAGCGCAACCTCGAAGTCATCAAGTTCGTC
AAGAACCACCACTTCACCAGTGCTCTCTTCCGAAAGAAGACGGGCCTGTC
ACTCGTCACGCCCAACCCCACACGGTTTGCGACTAACCTGATCTCCGCCA
TGCGCACCTTCAAGGTGAGGGTGCTTGTCTATCCCCCGCCGTTGCTGTTG
TGCAGGTTGACTGGCATGAAGTGTAGCGCGCACGCAGTCGACCTCCTGAT
GGAGGACATCGCGAAGCAGGAGTGGGCCGCGGACATCATCAAGCGCAACC
TCGAAGTCATCAAGTTCGTCAAGAACCACCACTTCACCAGTGCTCTCTTC
CGAAAGAAGACGGGCCTGTCACTCGTCACGCCCAACCCCACACGGTTTGC
GACTAACCTGATCTCCGCCATGCGCACCTTCAAGGTGAGG
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