mRNA_H-elongata_contig13959.2754.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13959.2754.1 vs. uniprot
Match: D8LHB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB7_ECTSI) HSP 1 Score: 189 bits (480), Expect = 1.780e-51 Identity = 193/314 (61.46%), Postives = 223/314 (71.02%), Query Frame = 1
Query: 250 RGGFVPVGEDFFVGGGTSGPVAYIPSS-SNAGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSGRGAAPWVVGKEVDVGEVEDDGDDIFGVGSGLQSKSGDKRHGDIFSLMGMPGAGGHRSKSSRLPGMRKKEDLTEEEDSSFFFVQLPTKLPRPLRQFQREIPKDDASASGVGTGADQAL-TPAPYHAVKKEVG-AAVGXXXXXXXXXXXXXKXXAKAEQAVPPPEELSFDQGLLRMRPGKIGKLYVHQSGRARLVVGGVSFVVHPGLPVSFVEEGVSINAKKSSFCSFGQASGR 1182
RGGFVPVG+DFFVGGG SGP AY+P+ + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++FGVG + SK G + GD+ +L+G G RS+SS+LPGMR + +LTEEEDSS FFVQLPTKLPRPL QR KD ASA G G T P AVK+E G + GXXXXXXXXXXXXX X KA + ++++FD+GL RMRPGKIGKLYVHQSG+ARLV+GGVS VVHPGLPVSFVE+GVSI+AK+ +FCSFGQ + R
Sbjct: 163 RGGFVPVGQDFFVGGGGSGPAAYMPAGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMFGVGESV-SKGGGGKGGDVLTLIGSDV--GRRSRSSKLPGMRNQAELTEEEDSSLFFVQLPTKLPRPLAACQRG--KDGASAPVRGKGKXXXXATGGP--AVKEEAGESGAGXXXXXXXXXXXXXXXAEKASEIAA--DDVAFDRGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKR 467
BLAST of mRNA_H-elongata_contig13959.2754.1 vs. uniprot
Match: A0A6H5JXQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ5_9PHAE) HSP 1 Score: 185 bits (470), Expect = 1.310e-50 Identity = 194/346 (56.07%), Postives = 225/346 (65.03%), Query Frame = 1
Query: 253 GGFVPVGEDFFVGGGTSGPVAYIPSSSNAGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSGRGAAPWVVGKEVDVGEVEDDG-DDIFGVGSGLQSKSGDKRHGDIFSLMGMPGAGGHRSKSSRLPGMR-----------------------------------KKEDLTEEEDSSFFFVQLPTKLPRPLRQFQREIPKDDASASGVGTGADQALTPAPYHAVKKEVGAAVGXXXXXXXXXXXXXKXXAKAEQAVPPPEELSFDQGLLRMRPGKIGKLYVHQSGRARLVVGGVSFVVHPGLPVSFVEEGVSINAKKSSFCSFGQASGR 1182
GGFVPVG+DFFVGGG SGP AY+P+ G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +++FGVG + SK G + GD+ +L+G G RS+SS+LPGMR + +LTEEEDSS FFVQLPTKLPRPL FQR KD ASA G G +A T P AVK+E G + G XXXXXXXXXXXK A + + P ++++FDQGL RMRPGKIGKLYVHQSG+ARLV+GGVS VVHPGLPVSFVE+GVSI+AK+ +FCSFGQ + R
Sbjct: 66 GGFVPVGQDFFVGGGGSGPAAYMPAGVTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENMFGVGESV-SKGGGGKEGDVLTLIGSDV--GRRSRSSKLPGMRVTGNVMSEDDSMRPVALPVTATAQTPGSRLFAQANNQAELTEEEDSSLFFVQLPTKLPRPLAAFQRG--KDGASAPVRGKGKGKA-TGGP--AVKEEAGES-GAGXXXXXXXXXXXKGAAAEKASEIPADDVAFDQGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKR 402 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13959.2754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13959.2754.1 >prot_H-elongata_contig13959.2754.1 ID=prot_H-elongata_contig13959.2754.1|Name=mRNA_H-elongata_contig13959.2754.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=394bp MWCSFPPEKDYQAAVANYRSGGGGSGDWAEGGERRSKGWGGGRGYEGKHHback to top mRNA from alignment at H-elongata_contig13959:3133..7892- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13959.2754.1 ID=mRNA_H-elongata_contig13959.2754.1|Name=mRNA_H-elongata_contig13959.2754.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4760bp|location=Sequence derived from alignment at H-elongata_contig13959:3133..7892- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13959:3133..7892- >mRNA_H-elongata_contig13959.2754.1 ID=mRNA_H-elongata_contig13959.2754.1|Name=mRNA_H-elongata_contig13959.2754.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2364bp|location=Sequence derived from alignment at H-elongata_contig13959:3133..7892- (Himanthalia elongata Himel1 dioecious)back to top |