prot_H-elongata_contig138592.2696.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig138592.2696.1
Unique Nameprot_H-elongata_contig138592.2696.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length91
Homology
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BLAST of mRNA_H-elongata_contig138592.2696.1 vs. uniprot
Match: D7G4S5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S5_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.860e-23
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 0 
Query:    1 RAYRIVLNNKVQAADFYSAVGGMTSLLVGLSRR------SAVGAPKAVSPWSLMAQGIAAGTVGFAMAAATGVPVYKPLELLGMRGFQPEDQGAG 89
            R YRI LN  VQ  DFY A+GG+ SL++GLS R      +  G  + VSPWSLMAQGIAAG+VGF +  A G+P+ +PLELL  RGF+ +    G
Sbjct:  105 RTYRIALNKGVQTVDFYGAIGGVMSLVLGLSTRRIGGGQAKAGIARVVSPWSLMAQGIAAGSVGFVLGKAVGLPMERPLELLNARGFEADRDVGG 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138592.2696.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4S5_ECTSI4.860e-2352.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..46
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 71..90
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 47..70
NoneNo IPR availableTMHMMTMhelixcoord: 47..69
NoneNo IPR availableTMHMMTMhelixcoord: 13..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138592contigH-elongata_contig138592:842..1655 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138592.2696.1mRNA_H-elongata_contig138592.2696.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig138592 842..1655 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig138592.2696.1 ID=prot_H-elongata_contig138592.2696.1|Name=mRNA_H-elongata_contig138592.2696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
RAYRIVLNNKVQAADFYSAVGGMTSLLVGLSRRSAVGAPKAVSPWSLMAQ
GIAAGTVGFAMAAATGVPVYKPLELLGMRGFQPEDQGAGE*
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