mRNA_H-elongata_contig138236.2674.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138236.2674.1
Unique NamemRNA_H-elongata_contig138236.2674.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138236.2674.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.610e-20
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 MPQIPYREIVGALMWAATITRPDISFAPYQLAKFNDNPGLTHWRAAQKALQYLWCTRDLGITYGGEPGGGTK-LSAWVDADYGTCPDTRR 267
            M   PYR +VG+ M+ A  TRPD++F   QL++F DNPG  HWRAA++AL+YL  TR  G+  GG        LSA+VDADY  CPDTRR
Sbjct:  626 MASKPYRSLVGSPMYLAMGTRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRR 715
[Close]
BLAST of mRNA_H-elongata_contig138236.2674.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.680e-20
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 MPQIPYREIVGALMWAATITRPDISFAPYQLAKFNDNPGLTHWRAAQKALQYLWCTRDLGITYGGEPGGGTK-LSAWVDADYGTCPDTRR 267
            M   PYR +VG+LM+ A  TRPD++F   QL++F DNP   HWRAA++AL+YL  TR  G+  GG        LSA+VDADY  CPDTRR
Sbjct: 1770 MASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLDNPDPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRR 1859
[Close]
BLAST of mRNA_H-elongata_contig138236.2674.1 vs. uniprot
Match: UPI001E1BB9B0 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BB9B0)

HSP 1 Score: 89.0 bits (219), Expect = 3.300e-20
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 MPQIPYREIVGALMWAATITRPDISFAPYQLAKFNDNPGLTHWRAAQKALQYLWCTRDLGITYGGEPGGGTK-LSAWVDADYGTCPDTRRS 270
            M QIPY+E VGAL++ +T TRPDIS+A  Q+AKFN NPG+ HW+A ++  +YL  TR+ GI +   P G  + +  + DAD+   PD + S
Sbjct:   12 MKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGIFFSPNPSGKEEEIVGFTDADHAGDPDDQTS 102
[Close]
BLAST of mRNA_H-elongata_contig138236.2674.1 vs. uniprot
Match: A0A8J6HGI2_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HGI2_TENMO)

HSP 1 Score: 88.2 bits (217), Expect = 3.940e-20
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:    7 QIPYREIVGALMWAATITRPDISFAPYQLAKFNDNPGLTHWRAAQKALQYLWCTRDLGITYGG--EPGGGTKLSAWVDADYGTCPDTRRS 270
            ++PYRE+VGAL + AT TRPDISFA   L +FN+     HW+AA++ L+YL  T  +G+TYG   EP     +  +VDAD+G+CP+ RRS
Sbjct:   44 KLPYRELVGALTYLATTTRPDISFAVSCLKQFNNYYKEEHWKAAKRVLRYLKGTMGVGLTYGSNAEP-----IKGFVDADWGSCPENRRS 128
[Close]
BLAST of mRNA_H-elongata_contig138236.2674.1 vs. uniprot
Match: A0A4S4KZ61_9AGAM (Uncharacterized protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KZ61_9AGAM)

HSP 1 Score: 88.2 bits (217), Expect = 5.230e-20
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 MPQIPYREIVGALMWAATITRPDISFAPYQLAKFNDNPGLTHWRAAQKALQYLWCTRDLGITYGGEPGGGTKLSAWVDADYGTCPDTRRS 270
            M  +PYR++VGALM+ A  TRPDIS+A   LA+F+ NPG  HW+AA+   +YL  T+D+ +TY  +P      + + DAD+G   D RRS
Sbjct:   25 MKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRS 114
[Close]
BLAST of mRNA_H-elongata_contig138236.2674.1 vs. uniprot
Match: A0A4S4K4A0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4K4A0_9AGAM)

HSP 1 Score: 88.2 bits (217), Expect = 7.690e-20
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 MPQIPYREIVGALMWAATITRPDISFAPYQLAKFNDNPGLTHWRAAQKALQYLWCTRDLGITYGGEPGGGTKLSAWVDADYGTCPDTRRS 270
            M  +PYR++VGALM+ A  TRPDIS+A   LA+F+ NPG  HW+AA+   +YL  T+D+ +TY  +P      + + DAD+G   D RRS
Sbjct:   95 MKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRS 184
[Close]
BLAST of mRNA_H-elongata_contig138236.2674.1 vs. uniprot
Match: UPI001E1BCD31 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BCD31)

HSP 1 Score: 89.0 bits (219), Expect = 1.350e-19
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 MPQIPYREIVGALMWAATITRPDISFAPYQLAKFNDNPGLTHWRAAQKALQYLWCTRDLGITYGGEPGGGTKLSAWVDADYGTCPDTRRS 270
            M  IPY+E VGAL++ +T TRPDIS+A  Q+AKF+ NPG+ HW+A ++ ++Y+  TR  GI Y  E G    ++ + DADYG   D R S
Sbjct:   32 MKNIPYKEAVGALLYLSTTTRPDISYAVGQVAKFSQNPGIQHWKAVKRIIRYIAGTRTYGILYSQEKG--EMVTGYTDADYGGDLDDRTS 119
[Close]
BLAST of mRNA_H-elongata_contig138236.2674.1 vs. uniprot
Match: UPI001E1BA9BB (uncharacterized protein LOC116922675 n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA9BB)

HSP 1 Score: 90.9 bits (224), Expect = 1.450e-19
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 MPQIPYREIVGALMWAATITRPDISFAPYQLAKFNDNPGLTHWRAAQKALQYLWCTRDLGITYGGEPGGGTK-LSAWVDADYGTCPDTRRS 270
            M QIPY+E VGAL++ +T TRPDIS+A  Q+AKFN NPG+ HW+A ++  +YL  TR+ GI +   P G  + +  + DAD+   PD R S
Sbjct:  275 MKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGILFSPNPSGKEEEIVGFTDADHAGDPDDRSS 365
[Close]
BLAST of mRNA_H-elongata_contig138236.2674.1 vs. uniprot
Match: A0A4S4KXB7_9AGAM (Uncharacterized protein n=3 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KXB7_9AGAM)

HSP 1 Score: 88.2 bits (217), Expect = 1.800e-19
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 MPQIPYREIVGALMWAATITRPDISFAPYQLAKFNDNPGLTHWRAAQKALQYLWCTRDLGITYGGEPGGGTKLSAWVDADYGTCPDTRRS 270
            M  +PYR++VGALM+ A  TRPDIS+A   LA+F+ NPG  HW+AA+   +YL  T+D+ +TY  +P      + + DAD+G   D RRS
Sbjct:   12 MKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRS 101
[Close]
BLAST of mRNA_H-elongata_contig138236.2674.1 vs. uniprot
Match: UPI001E1BDE4E (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BDE4E)

HSP 1 Score: 88.6 bits (218), Expect = 2.060e-19
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 MPQIPYREIVGALMWAATITRPDISFAPYQLAKFNDNPGLTHWRAAQKALQYLWCTRDLGITYGGEPGGGTK-LSAWVDADYGTCPDTRRS 270
            M QIPY+E VGAL++ +T TRPDIS+A  Q+AKFN NPG+ HW+A ++  +YL  TR+ GI +   P G  + +  + DAD+   PD + S
Sbjct:   32 MKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGILFSPNPSGKEEEIVDFTDADHAGDPDDQTS 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138236.2674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0W6P6_9STRA2.610e-2053.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0W780_9STRA2.680e-2053.33Integrase catalytic domain-containing protein n=3 ... [more]
UPI001E1BB9B03.300e-2047.25secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A8J6HGI2_TENMO3.940e-2050.00Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A4S4KZ61_9AGAM5.230e-2046.67Uncharacterized protein (Fragment) n=2 Tax=Phellin... [more]
A0A4S4K4A0_9AGAM7.690e-2046.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001E1BCD311.350e-1947.78secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
UPI001E1BA9BB1.450e-1948.35uncharacterized protein LOC116922675 n=1 Tax=Daphn... [more]
A0A4S4KXB7_9AGAM1.800e-1946.67Uncharacterized protein n=3 Tax=Phellinidium pouza... [more]
UPI001E1BDE4E2.060e-1947.25secreted RxLR effector protein 161-like n=1 Tax=Da... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138236contigH-elongata_contig138236:1468..1737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score93.2
Seed ortholog evalue6.6e-17
Seed eggNOG ortholog28532.XP_010559036.1
EggNOG free text desc.domain in FBox and BRCT domain containing plant proteins
EggNOG OGs389MP@33090,3GYT9@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929820.3112104-CDS-H-elongata_contig138236:1467..17371622929820.3112104-CDS-H-elongata_contig138236:1467..1737Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138236 1468..1737 +
1691679170.4238086-CDS-H-elongata_contig138236:1467..17371691679170.4238086-CDS-H-elongata_contig138236:1467..1737Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138236 1468..1737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138236.2674.1prot_H-elongata_contig138236.2674.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138236 1468..1737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138236.2674.1

>prot_H-elongata_contig138236.2674.1 ID=prot_H-elongata_contig138236.2674.1|Name=mRNA_H-elongata_contig138236.2674.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MPQIPYREIVGALMWAATITRPDISFAPYQLAKFNDNPGLTHWRAAQKAL
QYLWCTRDLGITYGGEPGGGTKLSAWVDADYGTCPDTRRS
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mRNA from alignment at H-elongata_contig138236:1468..1737+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138236.2674.1 ID=mRNA_H-elongata_contig138236.2674.1|Name=mRNA_H-elongata_contig138236.2674.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig138236:1468..1737+ (Himanthalia elongata Himel1 dioecious)
ATGCCCCAGATTCCCTACCGAGAAATCGTTGGGGCTCTAATGTGGGCAGC
GACGATAACCAGGCCCGACATATCATTCGCTCCGTACCAACTGGCGAAAT
TCAACGACAACCCGGGACTGACACACTGGAGGGCAGCCCAGAAAGCGCTT
CAATATTTATGGTGCACTCGGGACCTCGGGATCACCTACGGAGGGGAACC
GGGGGGAGGGACCAAGTTATCAGCGTGGGTCGACGCAGACTACGGCACCT
GCCCGGACACGCGTCGCTCA
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Coding sequence (CDS) from alignment at H-elongata_contig138236:1468..1737+

>mRNA_H-elongata_contig138236.2674.1 ID=mRNA_H-elongata_contig138236.2674.1|Name=mRNA_H-elongata_contig138236.2674.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig138236:1468..1737+ (Himanthalia elongata Himel1 dioecious)
ATGCCCCAGATTCCCTACCGAGAAATCGTTGGGGCTCTAATGTGGGCAGC
GACGATAACCAGGCCCGACATATCATTCGCTCCGTACCAACTGGCGAAAT
TCAACGACAACCCGGGACTGACACACTGGAGGGCAGCCCAGAAAGCGCTT
CAATATTTATGGTGCACTCGGGACCTCGGGATCACCTACGGAGGGGAACC
GGGGGGAGGGACCAAGTTATCAGCGTGGGTCGACGCAGACTACGGCACCT
GCCCGGACACGCGTCGCTCAATGCCCCAGATTCCCTACCGAGAAATCGTT
GGGGCTCTAATGTGGGCAGCGACGATAACCAGGCCCGACATATCATTCGC
TCCGTACCAACTGGCGAAATTCAACGACAACCCGGGACTGACACACTGGA
GGGCAGCCCAGAAAGCGCTTCAATATTTATGGTGCACTCGGGACCTCGGG
ATCACCTACGGAGGGGAACCGGGGGGAGGGACCAAGTTATCAGCGTGGGT
CGACGCAGACTACGGCACCTGCCCGGACACGCGTCGCTCA
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