mRNA_H-elongata_contig10023.27.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10023.27.1
Unique NamemRNA_H-elongata_contig10023.27.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10023.27.1 vs. uniprot
Match: A0A6H5KIS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS6_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 4.940e-112
Identity = 185/397 (46.60%), Postives = 242/397 (60.96%), Query Frame = 1
Query:    1 MIQAEILKLEGNGAIEESTSEWAANCSTVRKGDGTVRVVQDFRGLNARLKSQSGDLGDLMHIFDEMGNMSCFSSCDLASGLLQLGIHEDDSHLTAVREADGKLWQYVRCGFGLKTVPSAFANYAGGRLMPVKCLGVRNWLDDITIPSQTARGHWPLLRATFQCLREDKLTVNLQKSKFCQPELEFVGMVVDRQETRPVPSKIDAVTQLSRPIIVEEARVLLGMTEYLRQFVPNYSTLVAPISDCFRDPRFRSKLSRRMSVPRGKEQTRAFLVLRECLASPPILARPDWGADVQLHTDASETGARAVLTQQQGSPALEKVIAYGSRRWSRTDALRSQTDRECMGVMWAVAKFQPYLWGRPFTLITDCSALIWLLKSQALSPKYHRWALRLVEHNMTLK 1191
            MI+AEI +L   G I +S S WAA C  V+K DGT+R+  D+R LN  L S SG LGD+  IFD +     F+  DLASG  Q+ I E D + TA R+ADG LW++ R GFGL  +P+AF       L  +   GV +WLDDI I S +   H   L      L    L+VN  K  F     EF+GM++D     P PSK+DA+ ++ RP  VEE R  LG+T YLRQFVPNYS   AP+++  R+  F SK +R++ +P    +  AF  LRE LASP +LA PD     +LHTDAS  G  A L Q      + + +A+ + R+ +TDA R  T+RECMGV+WAV  F+PYL GR F L+TDCSAL WL +S+ L PK HRWALRL+E++M L+
Sbjct:   31 MIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCPFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQT--IDGVTRAVAFANHRFLQTDARRGLTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMELE 423          
BLAST of mRNA_H-elongata_contig10023.27.1 vs. uniprot
Match: A0A6H5JQV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV6_9PHAE)

HSP 1 Score: 348 bits (892), Expect = 1.330e-110
Identity = 187/397 (47.10%), Postives = 243/397 (61.21%), Query Frame = 1
Query:    1 MIQAEILKLEGNGAIEESTSEWAANCSTVRKGDGTVRVVQDFRGLNARLKSQSGDLGDLMHIFDEMGNMSCFSSCDLASGLLQLGIHEDDSHLTAVREADGKLWQYVRCGFGLKTVPSAFANYAGGRLMPVKCLGVRNWLDDITIPSQTARGHWPLLRATFQCLREDKLTVNLQKSKFCQPELEFVGMVVDRQETRPVPSKIDAVTQLSRPIIVEEARVLLGMTEYLRQFVPNYSTLVAPISDCFRDPRFRSKLSRRMSVPRGKEQTRAFLVLRECLASPPILARPDWGADVQLHTDASETGARAVLTQQQGSPALEKVIAYGSRRWSRTDALRSQTDRECMGVMWAVAKFQPYLWGRPFTLITDCSALIWLLKSQALSPKYHRWALRLVEHNMTLK 1191
            MI+AEI +L   G I +S S WAA C  V+K DGT+R+  D+R LN  L S SG LGD+  IFD +     F+  DLASG  Q+ I E D + TA R+ADG LW++ R GFGL  +P+AF       L  +   GV +WLDDI I S +   H   L      L    L+VN  K  F     EF+GM++D     P PSK+DA+ ++ RP  VEE R  LG+T YLRQFVPNYS   AP+++  R+  F SK +R++ +P    +  AF  LRE LASP +LA PD     +LHTDAS  G  A L Q      + + +A+ S R+S+TDA R  T+RECMGV+WAV  F+PYL GR F L+TDCSAL WL +S+ L PK HRWALRL+E++M L+
Sbjct:  171 MIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQT--IDGVTRAVAFASHRFSQTDARRGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMELE 563          
BLAST of mRNA_H-elongata_contig10023.27.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 348 bits (892), Expect = 2.000e-107
Identity = 187/397 (47.10%), Postives = 243/397 (61.21%), Query Frame = 1
Query:    1 MIQAEILKLEGNGAIEESTSEWAANCSTVRKGDGTVRVVQDFRGLNARLKSQSGDLGDLMHIFDEMGNMSCFSSCDLASGLLQLGIHEDDSHLTAVREADGKLWQYVRCGFGLKTVPSAFANYAGGRLMPVKCLGVRNWLDDITIPSQTARGHWPLLRATFQCLREDKLTVNLQKSKFCQPELEFVGMVVDRQETRPVPSKIDAVTQLSRPIIVEEARVLLGMTEYLRQFVPNYSTLVAPISDCFRDPRFRSKLSRRMSVPRGKEQTRAFLVLRECLASPPILARPDWGADVQLHTDASETGARAVLTQQQGSPALEKVIAYGSRRWSRTDALRSQTDRECMGVMWAVAKFQPYLWGRPFTLITDCSALIWLLKSQALSPKYHRWALRLVEHNMTLK 1191
            MI+AEI +L   G I +S S WAA C  V+K DGT+R+  D+R LN  L S SG LGD+  IFD +     F+  DLASG  Q+ I E D + TA R+ADG LW++ R GFGL  +P+AF       L  +   GV +WLDDI I S +   H   L      L    L+VN  K  F     EF+GM++D     P PSK+DA+ ++ RP  VEE R  LG+T YLRQFVPNYS   AP+++  R+  F SK +R++ +P    +  AF  LRE LASP +LA PD     +LHTDAS  G  A L Q      + + +A+ S R+S+TDA R  T+RECMGV+WAV  F+PYL GR F L+TDCSAL WL +S+ L PK HRWALRL+E++M L+
Sbjct:  173 MIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQT--IDGVTRAVAFASHRFSQTDARRGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMELE 565          
BLAST of mRNA_H-elongata_contig10023.27.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 348 bits (892), Expect = 3.450e-104
Identity = 187/397 (47.10%), Postives = 243/397 (61.21%), Query Frame = 1
Query:    1 MIQAEILKLEGNGAIEESTSEWAANCSTVRKGDGTVRVVQDFRGLNARLKSQSGDLGDLMHIFDEMGNMSCFSSCDLASGLLQLGIHEDDSHLTAVREADGKLWQYVRCGFGLKTVPSAFANYAGGRLMPVKCLGVRNWLDDITIPSQTARGHWPLLRATFQCLREDKLTVNLQKSKFCQPELEFVGMVVDRQETRPVPSKIDAVTQLSRPIIVEEARVLLGMTEYLRQFVPNYSTLVAPISDCFRDPRFRSKLSRRMSVPRGKEQTRAFLVLRECLASPPILARPDWGADVQLHTDASETGARAVLTQQQGSPALEKVIAYGSRRWSRTDALRSQTDRECMGVMWAVAKFQPYLWGRPFTLITDCSALIWLLKSQALSPKYHRWALRLVEHNMTLK 1191
            MI+AEI +L   G I +S S WAA C  V+K DGT+R+  D+R LN  L S SG LGD+  IFD +     F+  DLASG  Q+ I E D + TA R+ADG LW++ R GFGL  +P+AF       L  +   GV +WLDDI I S +   H   L      L    L+VN  K  F     EF+GM++D     P PSK+DA+ ++ RP  VEE R  LG+T YLRQFVPNYS   AP+++  R+  F SK +R++ +P    +  AF  LRE LASP +LA PD     +LHTDAS  G  A L Q      + + +A+ S R+S+TDA R  T+RECMGV+WAV  F+PYL GR F L+TDCSAL WL +S+ L PK HRWALRL+E++M L+
Sbjct:  695 MIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQT--IDGVTRAVAFASHRFSQTDARRGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMELE 1087          
BLAST of mRNA_H-elongata_contig10023.27.1 vs. uniprot
Match: A0A6H5K9Z4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z4_9PHAE)

HSP 1 Score: 317 bits (812), Expect = 3.230e-100
Identity = 172/369 (46.61%), Postives = 222/369 (60.16%), Query Frame = 1
Query:   43 IEESTSEWAANCSTVRKGDGTVRVVQDFRGLNARLKSQSGDLGDLMHIFDEMGNMSCFSSCDLASGLLQLGIHEDDSHLTAVREADGKLWQYVRCGFGLKTVPSAFANYAGGRLMPVKCLGVRNWLDDITIPSQTARGHWPLLRATFQCLREDKLTVNLQKSKFCQPELEFVGMVVDRQETRPVPSKIDAVTQLSRPIIVEEARVLLGMTEYLRQFVPNYSTLVAPISDCFRDPRFRSKLSRRMSVPRGKEQTRAFLVLRECLASPPILARPDWGADVQLHTDASETGARAVLTQQQGSPALEKVIAYGSRRWSRTDALRSQTDRECMGVMWAVAKFQPYLWGRPFTLITDCSALIWLLKSQALSPKYH 1149
            I +S S WAA C  V+K DGT+R+  D+R LN  L S SGDLGD+  IFD +     F+  DLASG  Q+ I E D + TA R+ADG LW++ R GFGL  +P+AF       L  +   GV +WLDDI I S +   H   L      L    L+VN  K  F     EF+GM++D     P PSK+DA+ ++ RP  VEE R  LG+T YLRQFVPNYS   AP+++  R+  F SK +R++ +P    +  AF  LRE LASP +LA PD     +LHTDAS  G  A L Q      + + +A+ S R+S+TDA R  T+RECMGV+WAV  F+PYL GR F L+TDCSAL WL +S+ L PK H
Sbjct:    2 IRQSMSPWAAQCLRVKK-DGTLRLCIDWRELNTLLVSDSGDLGDMQTIFDTLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQT--IDGVTRAVAFASHRFSQTDARRGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLH 365          
BLAST of mRNA_H-elongata_contig10023.27.1 vs. uniprot
Match: A0A6H5LHQ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHQ7_9PHAE)

HSP 1 Score: 323 bits (829), Expect = 5.210e-98
Identity = 177/402 (44.03%), Postives = 236/402 (58.71%), Query Frame = 1
Query:    4 IQAEILKLEGN-----GAIEESTSEWAANCSTVRKGDGTVRVVQDFRGLNARLKSQSGDLGDLMHIFDEMGNMSCFSSCDLASGLLQLGIHEDDSHLTAVREADGKLWQYVRCGFGLKTVPSAFANYAGGRLMPVKCLG-VRNWLDDITIPSQTARGHWPLLRATFQCLREDKLTVNLQKSKFCQPELEFVGMVVDRQETRPVPSKIDAVTQLSRPIIVEEARVLLGMTEYLRQFVPNYSTLVAPISDCFRDPRFRSKLSRRMSVPRGKEQTRAFLVLRECLASPPILARPDWGADVQLHTDASETGARAVLTQQQGSPALEKVIAYGSRRWSRTDALRSQTDRECMGVMWAVAKFQPYLWGRPFTLITDCSALIWLLKSQALSPKYHRWALRLVEHNMTLK 1191
            +QAEI+  + +     G I  STS W +  S V+K DG+ RV  D+R LNA  K  SG +G L  +   +   + F+  DL S   QL I E D H TA R+A G+L+++ RCGFGL T+P+ F+ + G  L P +  G V  WLDDI + S T   H  L+   F  L+    +V+ +KS FC  E+EF+G +V R   RP PSKI AV +L  P  V E R  LG+  YLR FVP++STL API+D  RD  F SK +R   VP G  Q  AF  + + L + P+LA PDW     LHTDASE  A AVLTQ   +   E  + Y S R++R +   S  DRE +GV++ + +F  YL  R FTL+TDC+AL WL  SQ LS K HRW+LRL++ ++ LK
Sbjct:  131 VQAEIVNDQADLWLETGVIRYSTSAWCSRTSIVKKKDGSNRVTIDYRPLNAVTKKDSGGIGTLATMHHRIKGSNFFTLLDLPSAYHQLSIKEADRHKTAFRDARGRLYEFTRCGFGLTTIPAVFSAHLGDTLRPTENKGGVERWLDDILLHSATLEEHMALIEEVFDLLQGVGYSVHFKKSMFCMSEVEFLGAMVGRSGVRPAPSKIRAVQELEMPATVGEVRAFLGLAGYLRGFVPDFSTLTAPITDLLRDKAFSSKRARNRRVPWGAAQIEAFQAVIKALVTHPVLAAPDWHLPFTLHTDASELAAGAVLTQPVEN--REAPLGYASHRFTRAEEKLSANDREVLGVLYGIEQFHTYLQHRRFTLVTDCAALTWLFTSQNLSSKMHRWSLRLMQFDIDLK 530          
BLAST of mRNA_H-elongata_contig10023.27.1 vs. uniprot
Match: A0A6H5JF70_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF70_9PHAE)

HSP 1 Score: 312 bits (800), Expect = 2.050e-97
Identity = 166/385 (43.12%), Postives = 225/385 (58.44%), Query Frame = 1
Query:   37 GAIEESTSEWAANCSTVRKGDGTVRVVQDFRGLNARLKSQSGDLGDLMHIFDEMGNMSCFSSCDLASGLLQLGIHEDDSHLTAVREADGKLWQYVRCGFGLKTVPSAFANYAGGRLMPVKCLGVRNWLDDITIPSQTARGHWPLLRATFQCLREDKLTVNLQKSKFCQPELEFVGMVVDRQETRPVPSKIDAVTQLSRPIIVEEARVLLGMTEYLRQFVPNYSTLVAPISDCFRDPRFRSKLSRRMSVPRGKEQTRAFLVLRECLASPPILARPDWGADVQLHTDASETGARAVLTQQQGSPALEKVIAYGSRRWSRTDALRSQTDRECMGVMWAVAKFQPYLWGRPFTLITDCSALIWLLKSQALSPKYHRWALRLVEHNMTLK 1191
            G    STS W +    V K DGT R+  D+R LN  +K  SG LGD+  + D M     FSS DLA    QL + E D H TA R+  G+L +  RC FG+ T+P+ F+   G  L  +   G+  WLDDI + ++T   H+ LL      L++   T +  KS+F  PELEF+G++V R  TRP PSK+ AV ++  P  V E R  LG+  YLR FVPN+S + AP+SD  R+  F SK +R   V  G  Q  A++ L E L + P+L  P+W     LHTDAS   A +VLTQQ  +   E  + Y S+R SR++   S  DRE +GV++A+  F+ YL  R FTLITDC+AL+WL  SQ LS K HRWAL+++ ++M LK
Sbjct:  116 GTFRLSTSSWCSRIVPVPKSDGTYRICIDYRDLNKLIKKDSGGLGDITGMLDRMKGSKFFSSLDLAQAYHQLELEETDKHKTAFRDPTGRLLESNRCAFGITTIPAVFSATLGDDLRELLGKGLEKWLDDIALHTKTLEEHFVLLEKVLTILKQKGYTGHFVKSEFLLPELEFLGVMVGRDGTRPAPSKVKAVQEMELPSTVGELRSFLGLANYLRGFVPNFSAIAAPLSDILRNKEFSSKRARNKRVVMGPPQIEAYMKLVEKLTTYPVLVLPNWLEPFTLHTDASLIAAGSVLTQQVEN--REAPVGYASKRLSRSEEKLSSNDREVLGVLYALEHFKVYLQHRQFTLITDCAALMWLFTSQKLSSKMHRWALKMMAYDMVLK 498          
BLAST of mRNA_H-elongata_contig10023.27.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 3.220e-94
Identity = 175/398 (43.97%), Postives = 237/398 (59.55%), Query Frame = 1
Query:    1 MIQAEILKLEGNGAIEESTSEWAANCSTVRKGDGTVRVVQDFRGLNARLKSQSGDLGDLMHIFDEMGNMSCFSSCDLASGLLQLGIHEDDSHLTAVREADGKLWQYVRCGFGLKTVPSAFANYAGGRLMPVKCLGVRNWLDDITIPSQTARGHWPLLRATFQCLREDKLTVNLQKSKFCQPELEFVGMVVDRQETRPVPSKIDAVTQLSRPIIVEEARVLLGMTEYLRQFVPNYSTLVAPISDCFRDPRFRSKLSRRMSVPRGKEQTRAFLVLRECLASPPILARPDWGADVQLHTDASETGARAVLTQQ-QGSPALEKVIAYGSRRWSRTDALRSQTDRECMGVMWAVAKFQPYLWGRPFTLITDCSALIWLLKSQALSPKYHRWALRLVEHNMTLK 1191
            MI+AEI +L   G I  S S WAA C  V+K DGT+R+  D+R LN  L + SG LGD+  IFD +     F+  DLASG  Q+ I E D + TA R+ADG L+++ R GFGL  +PSAF       L  V   GV +WLDDI + ++T   H   L      LR   L+VN  K  F     EF+GM++D     P PSK++A+  + RP  VE+ R L+                 AP++D  R+  F SK +R++ +  G+ +  AF  LR+CLASP +LA PD  A  +LH+DAS  GA A L Q   G+P   ++IA+ S ++SRTDA R  T+RECMGV+W V  F+PYL GR F ++TDCSAL WL +S+ L PK HRWALRL+E+++ L+
Sbjct:  333 MIRAEIQQLLDRGIIRPSMSPWAAQCLCVKKKDGTMRLCIDWRVLNKLLVADSGGLGDMQTIFDGLKGKRYFTQIDLASGFHQIEIAEKDRYKTAFRDADGMLYEFTRAGFGLTVLPSAFTRRVKSALGIVD--GVFSWLDDILVANETWEEHLAALVLVLTRLRAAGLSVNFPKCIFGASSQEFLGMIIDATGMHPAPSKLEAIANMPRPQTVEDLRTLVA----------------APLTDILRNKDFASKRARKLPIQWGQAEEHAFHHLRQCLASPTVLAFPDPNAPFELHSDASSVGAGATLLQTIDGTP---RIIAFASHKFSRTDARRGPTERECMGVLWGVDHFKPYLAGRQFKVVTDCSALTWLFRSRELCPKLHRWALRLMEYDIGLE 709          
BLAST of mRNA_H-elongata_contig10023.27.1 vs. uniprot
Match: A0A6H5KHG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG6_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 1.500e-87
Identity = 156/398 (39.20%), Postives = 231/398 (58.04%), Query Frame = 1
Query:    1 MIQAEILKLEGNGAIEESTSEWAANCSTVRKGDGTVRVVQDFRGLNARLKSQSGDLGDLMHIFDEMGNMSCFSSCDLASGLLQLGIHEDDSHLTAVREADGKLWQYVRCGFGLKTVPSAFANYAGGRLMPVKCLG-VRNWLDDITIPSQTARGHWPLLRATFQCLREDKLTVNLQKSKFCQPELEFVGMVVDRQETRPVPSKIDAVTQLSRPIIVEEARVLLGMTEYLRQFVPNYSTLVAPISDCFRDPRFRSKLSRRMSVPRGKEQTRAFLVLRECLASPPILARPDWGADVQLHTDASETGARAVLTQQQGSPALEKVIAYGSRRWSRTDALRSQTDRECMGVMWAVAKFQPYLWGRPFTLITDCSALIWLLKSQALSPKYHRWALRLVEHNMTLK 1191
            ++ + + KL   G +E + S+W +  S   K DG  R+  D+R LN      SG +G+L  + D +     F+  DL     Q+ I   D   TA R+A G+L+Q+ RC FGL T+P+ F+   G  L P +  G +  WLDDI I S+T   H   +    + L+E   +V+  KS FC  E+EF+G++V R   RP PSKI A+T++ +P  V   R  +GM  +LR FV ++S +VAP++D  R+  F +K +R +++P G+EQ  A   +   L SPP+L  PDW     LHTDASE  A AVLTQ       +  I +GS RW++++A R+ TDRE    ++ +  F+ YL  +PFTL+TDCSA+ WL +SQ LS   +R+ALR++E  MTL+
Sbjct:  829 ILNSTVDKLHEQGIVEYADSQWCSRVSLQPKKDGGTRMTLDYRPLNNLTVKNSGGIGNLASMHDRVRKSKWFTLLDLPQAYHQIPIKPSDRPKTAFRDARGRLYQFTRCSFGLTTIPAVFSALLGDTLRPTESKGGIERWLDDILIHSETLEEHLKKIDEVLKLLQEAGFSVHFDKSLFCMQEVEFLGVMVGRSGVRPPPSKIKAITEMEKPTTVGGLRSFVGMANFLRDFVKDFSAIVAPLTDILRNKDFSTKRARNLAIPWGEEQDAAHDAIIRALVSPPVLLPPDWELPFTLHTDASERAAGAVLTQVVEDH--DTAIGFGSHRWTQSEAKRAPTDREVRAALFGLEHFRIYLLHQPFTLVTDCSAITWLFQSQHLSSTMYRYALRMMEFTMTLQ 1224          
BLAST of mRNA_H-elongata_contig10023.27.1 vs. uniprot
Match: A0A6H5KGF2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF2_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 1.040e-84
Identity = 162/397 (40.81%), Postives = 216/397 (54.41%), Query Frame = 1
Query:    1 MIQAEILKLEGNGAIEESTSEWAANCSTVRKGDGTVRVVQDFRGLNARLKSQSGDLGDLMHIFDEMGNMSCFSSCDLASGLLQLGIHEDDSHLTAVREADGKLWQYVRCGFGLKTVPSAFANYAGGRLMPVKCLGVRNWLDDITIPSQTARGHWPLLRATFQCLREDKLTVNLQKSKFCQPELEFVGMVVDRQETRPVPSKIDAVTQLSRPIIVEEARVLLGMTEYLRQFVPNYSTLVAPISDCFRDPRFRSKLSRRMSVPRGKEQTRAFLVLRECLASPPILARPDWGADVQLHTDASETGARAVLTQQQGSPALEKVIAYGSRRWSRTDALRSQTDRECMGVMWAVAKFQPYLWGRPFTLITDCSALIWLLKSQALSPKYHRWALRLVEHNMTLK 1191
            MI+AEI +L   G I +S S WAA C  V+K DGT+R+  D+R LN  L S SG L D+  IFD +     F+  DLASG  Q+ I E D + TA R+ADG LW++ R GFGL  +P+AF       L  +   GV +WLDDI I S + + H     AT   +    L   L          EF+GM++D     P PSK+DA+ ++ RP  VEE R  LG+T Y RQ VPNYS   AP+++  R+  F SK +R++ +P                                        G  A L Q      + + +A+ S R+S+TDA R  T+RECMGV+WAV  F+PYL GR F L+TDCSAL WL +S+ L PK HRWALRL+E++M L+
Sbjct:   96 MIRAEIQQLVDRGVIRQSMSAWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLADMQTIFDGLKGKKYFTQVDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWQEHL----ATLTLVLNRLLAAGLS---------EFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYFRQVVPNYSLTAAPLTNILRNKAFASKRARKLHIP-------------------------------------CTLGVGASLMQT--IDGVTRAVAFASHRFSQTDARRGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMELE 438          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10023.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIS6_9PHAE4.940e-11246.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQV6_9PHAE1.330e-11047.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFK7_9PHAE2.000e-10747.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE3.450e-10447.10RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5K9Z4_9PHAE3.230e-10046.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LHQ7_9PHAE5.210e-9844.03Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JF70_9PHAE2.050e-9743.12Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBF4_9PHAE3.220e-9443.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG6_9PHAE1.500e-8739.20Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KGF2_9PHAE1.040e-8440.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10023contigH-elongata_contig10023:4686..5879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score208.4
Seed ortholog evalue6.3e-51
Seed eggNOG ortholog7668.SPU_003062-tr
EggNOG free text desc.K02A2.6-like
EggNOG OGs38F42@33154,3BA5H@33208,3CWAK@33213,COG2801@1,KOG0017@2759
COG Functional cat.E
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1194
Cds size1194
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929544.778075-CDS-H-elongata_contig10023:4685..58791622929544.778075-CDS-H-elongata_contig10023:4685..5879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10023 4686..5879 -
1691679062.718124-CDS-H-elongata_contig10023:4685..58791691679062.718124-CDS-H-elongata_contig10023:4685..5879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10023 4686..5879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10023.27.1prot_H-elongata_contig10023.27.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10023 4686..5879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10023.27.1

>prot_H-elongata_contig10023.27.1 ID=prot_H-elongata_contig10023.27.1|Name=mRNA_H-elongata_contig10023.27.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=398bp
MIQAEILKLEGNGAIEESTSEWAANCSTVRKGDGTVRVVQDFRGLNARLK
SQSGDLGDLMHIFDEMGNMSCFSSCDLASGLLQLGIHEDDSHLTAVREAD
GKLWQYVRCGFGLKTVPSAFANYAGGRLMPVKCLGVRNWLDDITIPSQTA
RGHWPLLRATFQCLREDKLTVNLQKSKFCQPELEFVGMVVDRQETRPVPS
KIDAVTQLSRPIIVEEARVLLGMTEYLRQFVPNYSTLVAPISDCFRDPRF
RSKLSRRMSVPRGKEQTRAFLVLRECLASPPILARPDWGADVQLHTDASE
TGARAVLTQQQGSPALEKVIAYGSRRWSRTDALRSQTDRECMGVMWAVAK
FQPYLWGRPFTLITDCSALIWLLKSQALSPKYHRWALRLVEHNMTLK*
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mRNA from alignment at H-elongata_contig10023:4686..5879-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10023.27.1 ID=mRNA_H-elongata_contig10023.27.1|Name=mRNA_H-elongata_contig10023.27.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1194bp|location=Sequence derived from alignment at H-elongata_contig10023:4686..5879- (Himanthalia elongata Himel1 dioecious)
ATGATACAGGCCGAGATCCTGAAACTCGAGGGGAACGGGGCGATCGAGGA GTCGACGTCGGAATGGGCAGCGAACTGCTCCACTGTGCGAAAAGGCGACG GAACAGTACGGGTAGTCCAGGACTTCCGCGGACTCAATGCCCGCCTGAAG TCGCAGAGCGGAGACCTCGGAGATCTGATGCACATATTCGACGAGATGGG GAATATGTCCTGCTTCTCGAGCTGCGACCTCGCATCAGGGCTCCTGCAAC TGGGGATTCACGAAGATGACAGCCACTTGACGGCTGTCCGCGAAGCAGAC GGGAAACTCTGGCAATACGTGCGTTGCGGTTTTGGCCTTAAGACGGTACC GTCCGCCTTCGCGAACTATGCCGGAGGAAGGCTCATGCCGGTGAAATGCC TAGGAGTAAGAAACTGGCTTGATGACATCACCATCCCGTCGCAAACCGCT AGAGGACATTGGCCGTTACTGCGGGCCACCTTCCAGTGCTTGAGGGAAGA TAAACTAACCGTCAACCTCCAAAAATCAAAGTTCTGTCAGCCAGAGCTAG AATTCGTCGGTATGGTTGTTGATCGACAAGAAACCAGGCCAGTACCTAGC AAGATCGACGCAGTTACGCAGTTATCACGACCAATTATTGTGGAGGAAGC CCGGGTACTACTAGGCATGACGGAATATCTACGACAGTTCGTGCCCAACT ACAGCACCCTAGTGGCGCCAATCTCCGATTGTTTCCGAGACCCGCGGTTC CGTTCGAAGCTATCTAGACGAATGAGCGTACCCCGAGGGAAGGAACAGAC GAGAGCGTTCCTGGTCCTGAGAGAGTGCCTAGCGTCACCTCCTATCCTGG CCCGACCAGACTGGGGGGCAGACGTTCAGCTGCACACCGACGCTAGCGAA ACAGGGGCCAGAGCAGTCCTGACCCAGCAGCAGGGATCGCCAGCTCTCGA GAAAGTAATCGCCTATGGTAGCCGACGGTGGTCGAGGACAGACGCCCTGA GATCGCAAACCGATCGCGAGTGCATGGGAGTAATGTGGGCTGTTGCGAAA TTCCAGCCCTACCTGTGGGGAAGGCCGTTCACGCTTATCACCGACTGCTC GGCGCTGATCTGGTTGCTCAAGAGCCAGGCCCTCTCGCCGAAGTACCACC GCTGGGCACTGCGCCTTGTGGAACACAACATGACCCTGAAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig10023:4686..5879-

>mRNA_H-elongata_contig10023.27.1 ID=mRNA_H-elongata_contig10023.27.1|Name=mRNA_H-elongata_contig10023.27.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2388bp|location=Sequence derived from alignment at H-elongata_contig10023:4686..5879- (Himanthalia elongata Himel1 dioecious)
ATGATACAGGCCGAGATCCTGAAACTCGAGGGGAACGGGGCGATCGAGGA
GTCGACGTCGGAATGGGCAGCGAACTGCTCCACTGTGCGAAAAGGCGACG
GAACAGTACGGGTAGTCCAGGACTTCCGCGGACTCAATGCCCGCCTGAAG
TCGCAGAGCGGAGACCTCGGAGATCTGATGCACATATTCGACGAGATGGG
GAATATGTCCTGCTTCTCGAGCTGCGACCTCGCATCAGGGCTCCTGCAAC
TGGGGATTCACGAAGATGACAGCCACTTGACGGCTGTCCGCGAAGCAGAC
GGGAAACTCTGGCAATACGTGCGTTGCGGTTTTGGCCTTAAGACGGTACC
GTCCGCCTTCGCGAACTATGCCGGAGGAAGGCTCATGCCGGTGAAATGCC
TAGGAGTAAGAAACTGGCTTGATGACATCACCATCCCGTCGCAAACCGCT
AGAGGACATTGGCCGTTACTGCGGGCCACCTTCCAGTGCTTGAGGGAAGA
TAAACTAACCGTCAACCTCCAAAAATCAAAGTTCTGTCAGCCAGAGCTAG
AATTCGTCGGTATGGTTGTTGATCGACAAGAAACCAGGCCAGTACCTAGC
AAGATCGACGCAGTTACGCAGTTATCACGACCAATTATTGTGGAGGAAGC
CCGGGTACTACTAGGCATGACGGAATATCTACGACAGTTCGTGCCCAACT
ACAGCACCCTAGTGGCGCCAATCTCCGATTGTTTCCGAGACCCGCGGTTC
CGTTCGAAGCTATCTAGACGAATGAGCGTACCCCGAGGGAAGGAACAGAC
GAGAGCGTTCCTGGTCCTGAGAGAGTGCCTAGCGTCACCTCCTATCCTGG
CCCGACCAGACTGGGGGGCAGACGTTCAGCTGCACACCGACGCTAGCGAA
ACAGGGGCCAGAGCAGTCCTGACCCAGCAGCAGGGATCGCCAGCTCTCGA
GAAAGTAATCGCCTATGGTAGCCGACGGTGGTCGAGGACAGACGCCCTGA
GATCGCAAACCGATCGCGAGTGCATGGGAGTAATGTGGGCTGTTGCGAAA
TTCCAGCCCTACCTGTGGGGAAGGCCGTTCACGCTTATCACCGACTGCTC
GGCGCTGATCTGGTTGCTCAAGAGCCAGGCCCTCTCGCCGAAGTACCACC
GCTGGGCACTGCGCCTTGTGGAACACAACATGACCCTGAAATAGATGATA
CAGGCCGAGATCCTGAAACTCGAGGGGAACGGGGCGATCGAGGAGTCGAC
GTCGGAATGGGCAGCGAACTGCTCCACTGTGCGAAAAGGCGACGGAACAG
TACGGGTAGTCCAGGACTTCCGCGGACTCAATGCCCGCCTGAAGTCGCAG
AGCGGAGACCTCGGAGATCTGATGCACATATTCGACGAGATGGGGAATAT
GTCCTGCTTCTCGAGCTGCGACCTCGCATCAGGGCTCCTGCAACTGGGGA
TTCACGAAGATGACAGCCACTTGACGGCTGTCCGCGAAGCAGACGGGAAA
CTCTGGCAATACGTGCGTTGCGGTTTTGGCCTTAAGACGGTACCGTCCGC
CTTCGCGAACTATGCCGGAGGAAGGCTCATGCCGGTGAAATGCCTAGGAG
TAAGAAACTGGCTTGATGACATCACCATCCCGTCGCAAACCGCTAGAGGA
CATTGGCCGTTACTGCGGGCCACCTTCCAGTGCTTGAGGGAAGATAAACT
AACCGTCAACCTCCAAAAATCAAAGTTCTGTCAGCCAGAGCTAGAATTCG
TCGGTATGGTTGTTGATCGACAAGAAACCAGGCCAGTACCTAGCAAGATC
GACGCAGTTACGCAGTTATCACGACCAATTATTGTGGAGGAAGCCCGGGT
ACTACTAGGCATGACGGAATATCTACGACAGTTCGTGCCCAACTACAGCA
CCCTAGTGGCGCCAATCTCCGATTGTTTCCGAGACCCGCGGTTCCGTTCG
AAGCTATCTAGACGAATGAGCGTACCCCGAGGGAAGGAACAGACGAGAGC
GTTCCTGGTCCTGAGAGAGTGCCTAGCGTCACCTCCTATCCTGGCCCGAC
CAGACTGGGGGGCAGACGTTCAGCTGCACACCGACGCTAGCGAAACAGGG
GCCAGAGCAGTCCTGACCCAGCAGCAGGGATCGCCAGCTCTCGAGAAAGT
AATCGCCTATGGTAGCCGACGGTGGTCGAGGACAGACGCCCTGAGATCGC
AAACCGATCGCGAGTGCATGGGAGTAATGTGGGCTGTTGCGAAATTCCAG
CCCTACCTGTGGGGAAGGCCGTTCACGCTTATCACCGACTGCTCGGCGCT
GATCTGGTTGCTCAAGAGCCAGGCCCTCTCGCCGAAGTACCACCGCTGGG
CACTGCGCCTTGTGGAACACAACATGACCCTGAAATAG
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