mRNA_H-elongata_contig13768.2646.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13768.2646.1
Unique NamemRNA_H-elongata_contig13768.2646.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: D7FRM9_ECTSI (40S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM9_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.140e-37
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    4 DNQGSKLVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 198
            DNQG KL KVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGD+LCLLEWEREARRLR
Sbjct:    2 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
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BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: F0XVZ1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVZ1_AURAN)

HSP 1 Score: 116 bits (290), Expect = 8.120e-33
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:   19 KLVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 198
            KL K+N+VLGRTGNTGNVTQVRVEF+DDP RSIIRNVKGPVREGD+LCLLEWEREARRLR
Sbjct:    7 KLAKINRVLGRTGNTGNVTQVRVEFIDDPNRSIIRNVKGPVREGDILCLLEWEREARRLR 66
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BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: A0A836CPG2_9STRA (40S ribosomal protein S28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.110e-30
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:   19 KLVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 198
            KL KV++VLGRTGNTGNVTQVRV+F+DD +R+IIRNVKGPVREGD+LCLLEWEREARRLR
Sbjct:    6 KLAKVSRVLGRTGNTGNVTQVRVDFMDDSSRTIIRNVKGPVREGDILCLLEWEREARRLR 65
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BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: A0A4D9CYK0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYK0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.530e-30
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    4 DNQGSKLVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 198
            D+Q  KLVKV  V  RTG+TGNVTQVRVEFLDDPTRSI RNVKGPVREGD+LCLLEWER+ARRLR
Sbjct:    2 DSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 66
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BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: B7GCW6_PHATC (Predicted protein n=4 Tax=Naviculales TaxID=38748 RepID=B7GCW6_PHATC)

HSP 1 Score: 104 bits (260), Expect = 3.160e-28
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:   19 KLVKVNKVLGRTGNTGNVTQVRVEFLD--DPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 198
            KL KVN+VLGRTGNTGNVTQVRVEF+D     RSI+RNVKGPVREGD+LCLLEWEREARRLR
Sbjct:    6 KLAKVNRVLGRTGNTGNVTQVRVEFMDAEGAGRSIVRNVKGPVREGDILCLLEWEREARRLR 67
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BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: K3WAC4_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WAC4_GLOUD)

HSP 1 Score: 103 bits (258), Expect = 6.380e-28
Identity = 51/59 (86.44%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:   22 LVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 198
            L KV  VLGRTGNTGNVTQVRVEFL D  R IIRNVKGPVREGD+LCLLEWEREARRLR
Sbjct:    9 LAKVVNVLGRTGNTGNVTQVRVEFLQDDKRKIIRNVKGPVREGDILCLLEWEREARRLR 67
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BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: A0A7S0CCP2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCP2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.270e-27
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:   19 KLVKVNKVLGRTGNTGNVTQVRVEFLDDPT------RSIIRNVKGPVREGDMLCLLEWEREARRLR 198
            KL KV++VLGRTGNTGNVTQVRVEF+DD        RSI+RNVKGPVREGD+LCLLEWEREARRLR
Sbjct:   39 KLAKVSRVLGRTGNTGNVTQVRVEFMDDGNAGGQAGRSIVRNVKGPVREGDILCLLEWEREARRLR 104
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BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: G1X7F7_ARTOA (Uncharacterized protein n=8 Tax=Fungi TaxID=4751 RepID=G1X7F7_ARTOA)

HSP 1 Score: 102 bits (253), Expect = 3.690e-27
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:   19 KLVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 198
            KLVKV KVLGRTG+ G VTQVRVEFLDD TRSIIRNVKGPVRE D+LCLLE EREARRLR
Sbjct:    8 KLVKVTKVLGRTGSRGGVTQVRVEFLDDKTRSIIRNVKGPVREDDILCLLESEREARRLR 67
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BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: A0A1E7FGX9_9STRA (Ribosomal protein S28e (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGX9_9STRA)

HSP 1 Score: 101 bits (251), Expect = 7.070e-27
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:   19 KLVKVNKVLGRTGNTGNVTQVRVEFLDDPT-----RSIIRNVKGPVREGDMLCLLEWEREARRLR 198
            KL KV+KVLGRTGNTGNVTQVRVEF+D  +     RSI+RNVKGPVRE D+LCLLEWEREARRLR
Sbjct:    1 KLAKVSKVLGRTGNTGNVTQVRVEFMDAESGAGSGRSIVRNVKGPVRENDILCLLEWEREARRLR 65
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BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: A0A2C5YHA1_9HYPO (Uncharacterized protein n=5 Tax=sordariomyceta TaxID=715989 RepID=A0A2C5YHA1_9HYPO)

HSP 1 Score: 101 bits (251), Expect = 7.460e-27
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:   19 KLVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 198
            KLVKV KVLGRTG+ G VTQVRVEF+DD TRSIIRNVKGPVRE D+LCLLE EREARRLR
Sbjct:    8 KLVKVTKVLGRTGSRGGVTQVRVEFMDDQTRSIIRNVKGPVREDDILCLLESEREARRLR 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRM9_ECTSI2.140e-3795.3840S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID... [more]
F0XVZ1_AURAN8.120e-3390.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CPG2_9STRA3.110e-3085.0040S ribosomal protein S28 n=1 Tax=Tribonema minus ... [more]
A0A4D9CYK0_9STRA4.530e-3083.08Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
B7GCW6_PHATC3.160e-2883.87Predicted protein n=4 Tax=Naviculales TaxID=38748 ... [more]
K3WAC4_GLOUD6.380e-2886.44Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
A0A7S0CCP2_9STRA1.270e-2778.79Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
G1X7F7_ARTOA3.690e-2786.67Uncharacterized protein n=8 Tax=Fungi TaxID=4751 R... [more]
A0A1E7FGX9_9STRA7.070e-2778.46Ribosomal protein S28e (Fragment) n=1 Tax=Fragilar... [more]
A0A2C5YHA1_9HYPO7.460e-2785.00Uncharacterized protein n=5 Tax=sordariomyceta Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13768contigH-elongata_contig13768:487..883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog2880.D7FRM9
Preferred namerps28
KEGG rclassRC00003,RC03279
KEGG koko:K02493,ko:K02979,ko:K07767,ko:K08767
KEGG ReactionR10806
KEGG Pathwayko03010,ko03320,ko04979,map03010,map03320,map04979
KEGG ModuleM00177,M00179
GOsGO:0000028,GO:0000309,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0003824,GO:0004515,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0007444,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009066,GO:0009108,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009435,GO:0009888,GO:0009987,GO:0010467,GO:0012505,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016604,GO:0016740,GO:0016772,GO:0016779,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0030490,GO:0030867,GO:0031090,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034622,GO:0034627,GO:0034628,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035220,GO:0035295,GO:0042175,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042802,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0046034,GO:0046483,GO:0046496,GO:0048513,GO:0048731,GO:0048856,GO:0051186,GO:0051188,GO:0055086,GO:0060429,GO:0065003,GO:0070013,GO:0070566,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0072521,GO:0072524,GO:0072525,GO:0090304,GO:0090407,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1990904,GO:1990966
EggNOG free text desc.ribosomal protein
EggNOG OGsCOG2053@1,KOG3502@2759
EC2.1.1.297,3.6.4.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03012,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929817.746006-CDS-H-elongata_contig13768:486..5641622929817.746006-CDS-H-elongata_contig13768:486..564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13768 487..564 +
1691679169.23832-CDS-H-elongata_contig13768:486..5641691679169.23832-CDS-H-elongata_contig13768:486..564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13768 487..564 +
1622929817.7616718-CDS-H-elongata_contig13768:760..8831622929817.7616718-CDS-H-elongata_contig13768:760..883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13768 761..883 +
1691679169.248703-CDS-H-elongata_contig13768:760..8831691679169.248703-CDS-H-elongata_contig13768:760..883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13768 761..883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13768.2646.1prot_H-elongata_contig13768.2646.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13768 487..883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13768.2646.1

>prot_H-elongata_contig13768.2646.1 ID=prot_H-elongata_contig13768.2646.1|Name=mRNA_H-elongata_contig13768.2646.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
QDNQGSKLVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREG
DMLCLLEWEREARRLR*
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mRNA from alignment at H-elongata_contig13768:487..883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13768.2646.1 ID=mRNA_H-elongata_contig13768.2646.1|Name=mRNA_H-elongata_contig13768.2646.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=397bp|location=Sequence derived from alignment at H-elongata_contig13768:487..883+ (Himanthalia elongata Himel1 dioecious)
CAGGACAACCAAGGCAGCAAGCTGGTGAAAGTAAACAAGGTTCTCGGCCG
CACCGGCAACACCGGTAATGTAACTCAGGTGCGTACTGCATCCAACCTGA
CAACCTTGCCGCTTCCGTGACATCAGTGCAATAAGGTCGTGTAAAACTCA
GCTTCATGGAAGTAGCTATATATACGCCAATAGTTTAGTCTATATCCGTG
GCGTGCTGGTAAAACTTTATCGGCGACACCCCTTATATTGCAAAGCGTTG
GTCTCGTGGTTATGACTTCGTTAGGTGCGCGTGGAGTTCTTGGACGACCC
GACCCGCTCCATCATCCGCAACGTGAAGGGTCCCGTTCGCGAGGGGGACA
TGCTCTGCCTCCTCGAGTGGGAGCGCGAGGCACGGCGTCTGAGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig13768:487..883+

>mRNA_H-elongata_contig13768.2646.1 ID=mRNA_H-elongata_contig13768.2646.1|Name=mRNA_H-elongata_contig13768.2646.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig13768:487..883+ (Himanthalia elongata Himel1 dioecious)
CAGGACAACCAAGGCAGCAAGCTGGTGAAAGTAAACAAGGTTCTCGGCCG
CACCGGCAACACCGGTAATGTAACTCAGCAGGACAACCAAGGCAGCAAGC
TGGTGAAAGTAAACAAGGTTCTCGGCCGCACCGGCAACACCGGTAATGTA
ACTCAGGTGCGCGTGGAGTTCTTGGACGACCCGACCCGCTCCATCATCCG
CAACGTGAAGGGTCCCGTTCGCGAGGGGGACATGCTCTGCCTCCTCGAGT
GGGAGCGCGAGGCACGGCGTCTGAGATAGGTGCGCGTGGAGTTCTTGGAC
GACCCGACCCGCTCCATCATCCGCAACGTGAAGGGTCCCGTTCGCGAGGG
GGACATGCTCTGCCTCCTCGAGTGGGAGCGCGAGGCACGGCGTCTGAGAT
AG
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