mRNA_H-elongata_contig13737.2630.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13737.2630.1
Unique NamemRNA_H-elongata_contig13737.2630.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13737.2630.1 vs. uniprot
Match: D7FK98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK98_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 5.800e-37
Identity = 127/310 (40.97%), Postives = 148/310 (47.74%), Query Frame = 1 
Query:  151 MCWDGVTSLWVFGGQGRTETRGTDFSRTHQGIKIRTLAKRTCFNDFHEFDTRTCEWRDHVQAGVCPPSRRGHTATLVVGRRLVEPKVPATPSISLESSKPSTNGHPWEGSTDSAHGSKAKGVGKRENYSPGLRSLANGNDETNGSSSHGKISEQCCWGGWSPERVDSQGDETVSHRGNVGQGGRRRAKSVERHE--------------EKEYASREMFLIGGAGTDSIRNLEVVHPQLWIFDFNHSSWACVNADNGGGXXXXXXXXX--------------VFDHTATLVGNEYIVVVGGVMVGRALNSQ 996
            MCWDG++SLWVFGGQG   ++  D SRTHQG+KIRTLA+RTCFNDF EFDT+       + AG  P     H                      LE+         W      AH         R+        L  GND   G+S + +   +    G S  R  S G  T   R   G+G                               SREMF+IGGAGTD IRN+EVV+PQLWIFDFN  +W CV A     XXXXXXXXX              VFDHTATL G  +IVV+GGVMVGRALNSQ
Sbjct:    1 MCWDGLSSLWVFGGQGAATSKA-DSSRTHQGVKIRTLARRTCFNDFFEFDTK------RLVAGPRPGGSLPH----------------------LEA---------W------AHCDPRSRAATRD--------LNLGND---GASGYRRADSESVGHGNSTPR--SPGRITPRKRSGEGEGXXXXXXXXXXXXXXXXXXXXXXXXMGRASCESREMFVIGGAGTDPIRNMEVVYPQLWIFDFNRRTWTCVEAAGXXXXXXXXXXXXXXXXXXXXGPGPPAVFDHTATLAGGTHIVVIGGVMVGRALNSQ 253
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BLAST of mRNA_H-elongata_contig13737.2630.1 vs. uniprot
Match: A0A6H5JRA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 4.250e-28
Identity = 106/298 (35.57%), Postives = 130/298 (43.62%), Query Frame = 1 
Query:  160 DGVTSLWVFGGQGRTETRGTDFSRTHQGIKIRTLAKRTCFNDFHEFDTRTCEWRDHVQAGVCPPSRRGHTATLVVGRRLVEPKVPA--TPSISLESSKPSTNGHPWEGSTDSAHGSKAKGVGKRENYSPGLRSLANGNDETNGSSSHGKISEQCCWGGWSPERVDSQGDETVSHRGNVGQGGRRRAKSVERHEEKEYASREMFLIGGAGTDSIR----NLEVVHPQLWIFDFNHSSWACVNADNGGGXXXXXXXXX-------------VFDHTATLVGNEYIVVVGGVMVGRALNSQ 996
            DG++SLWVFGGQG   ++  D SRTHQG+KIRTLA+RTCFNDF EFDT+     D          RR  + +  VG     P+ P   TP               W G  +        G           R   +G        + G+  E    GG   + +       V+ R       R  A+         Y S             +R    N+EVV+PQLWIFDFN  +W CV A  GGG XXX                  VFDHTATL G  +IVV+GGVMVGRALN Q
Sbjct:   27 DGLSSLWVFGGQGAATSKA-DSSRTHQGVKIRTLARRTCFNDFFEFDTKRVLGNDSASG-----HRRADSES--VGHGNSTPRSPGRITP-------------RKWRGEGEGGRRGAGGGXXXXXXXXXXXRESGDGGMGR----AFGESREMFVIGGAGTDPIRPPAAFVVAPRATSAGNLRMAAQPC------LYTSVLPKTRSSPNPPYVRYATKNMEVVYPQLWIFDFNRRTWTCVEAAGGGGAXXXGISKGNIPSAAAGPGPPAVFDHTATLAGGTHIVVIGGVMVGRALNGQ 293
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BLAST of mRNA_H-elongata_contig13737.2630.1 vs. uniprot
Match: A0A8J2SDP5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDP5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 7.920e-13
Identity = 48/139 (34.53%), Postives = 68/139 (48.92%), Query Frame = 1 
Query:    1 TALFEGELYLFGGLDAGPSNSLWALNIRDLRWRPIRTKTKIVPAPRQGHTMCWDGVTSLWVFGGQGRTETRGTDFSRTHQGIKIRTL-----AKRTCFNDFHEFDTRTCEWRDHVQAGVCPPSRRGHTATLVVGRRLVE 402
            + +   ++Y+FGGL AG SN LWAL+    RW  +       PA         D   ++++FGG GR +    D+ +   G+   TL     A+R+ F+D   FD     W +     +CP  RRGHTAT   GR LVE
Sbjct:   26 SCVLGSKVYVFGGLGAGASNQLWALDTILHRWERLLPPGPKPPARSAATLAGDDDAHAVYLFGGLGRVKR---DYLKKRDGVPGATLRTQLHAQRSMFSDVWRFDGTAKRWEELTFIHMCPAPRRGHTATYCSGRVLVE 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13737.2630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK98_ECTSI5.800e-3740.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRA7_9PHAE4.250e-2835.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2SDP5_9STRA7.920e-1334.53Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13737contigH-elongata_contig13737:5852..7777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue5.3e-35
Seed eggNOG ortholog2880.D7FK98
EggNOG OGs2D56T@1,2SXJ3@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size1000
Cds size999
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13737.2630.1prot_H-elongata_contig13737.2630.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13737 5853..7777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.9901206-CDS-H-elongata_contig13737:5852..60561622929815.9901206-CDS-H-elongata_contig13737:5852..6056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13737 5853..6056 -
1691679168.4683084-CDS-H-elongata_contig13737:5852..60561691679168.4683084-CDS-H-elongata_contig13737:5852..6056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13737 5853..6056 -
1622929816.014538-CDS-H-elongata_contig13737:6400..68841622929816.014538-CDS-H-elongata_contig13737:6400..6884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13737 6401..6884 -
1691679168.4799418-CDS-H-elongata_contig13737:6400..68841691679168.4799418-CDS-H-elongata_contig13737:6400..6884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13737 6401..6884 -
1622929816.0294588-CDS-H-elongata_contig13737:7104..72581622929816.0294588-CDS-H-elongata_contig13737:7104..7258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13737 7105..7258 -
1691679168.4886425-CDS-H-elongata_contig13737:7104..72581691679168.4886425-CDS-H-elongata_contig13737:7104..7258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13737 7105..7258 -
1622929816.051312-CDS-H-elongata_contig13737:7620..77771622929816.051312-CDS-H-elongata_contig13737:7620..7777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13737 7621..7777 -
1691679168.4990523-CDS-H-elongata_contig13737:7620..77771691679168.4990523-CDS-H-elongata_contig13737:7620..7777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13737 7621..7777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13737.2630.1

>prot_H-elongata_contig13737.2630.1 ID=prot_H-elongata_contig13737.2630.1|Name=mRNA_H-elongata_contig13737.2630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=333bp
TALFEGELYLFGGLDAGPSNSLWALNIRDLRWRPIRTKTKIVPAPRQGHT
MCWDGVTSLWVFGGQGRTETRGTDFSRTHQGIKIRTLAKRTCFNDFHEFD
TRTCEWRDHVQAGVCPPSRRGHTATLVVGRRLVEPKVPATPSISLESSKP
STNGHPWEGSTDSAHGSKAKGVGKRENYSPGLRSLANGNDETNGSSSHGK
ISEQCCWGGWSPERVDSQGDETVSHRGNVGQGGRRRAKSVERHEEKEYAS
REMFLIGGAGTDSIRNLEVVHPQLWIFDFNHSSWACVNADNGGGEGPGPP
PPPVFDHTATLVGNEYIVVVGGVMVGRALNSQA
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mRNA from alignment at H-elongata_contig13737:5852..7777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13737.2630.1 ID=mRNA_H-elongata_contig13737.2630.1|Name=mRNA_H-elongata_contig13737.2630.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1926bp|location=Sequence derived from alignment at H-elongata_contig13737:5852..7777- (Himanthalia elongata Himel1 dioecious)
ACAGCTCTTTTCGAGGGAGAGCTGTACCTATTCGGTGGCCTTGACGCCGG
ACCGTCCAACTCCCTGTGGGCCTTGAACATCCGTGACCTGCGCTGGCGGC
CTATTCGGACCAAAACCAAGATAGTGCCGGCACCCCGACAGGGACACACT
ATGTGCTGTGAGTGTAAAAAAAAGTCGAATCTAGCGAAAGCGGTGATTTG
GCAATACCGTGGCGCCTTGTTGTGAGGCTGTGAACCTCATGATATTCTAG
GGGACAAATGCAGAGGGCTCTAGAGCCTTCAAGGCCAAGGAAAACGTCGA
CATGTAAGTAACAGCCCGGCTTCCTTTTTCGTATATTTCCTGCTGCTGAA
AACCGGGCAGCATAACCTTGGTTTTCTTCGAGGAAAAGCTCTGCGCCTTC
GCCTGTAGTCAGGCAGTTACACAACAGTGCGATTGGTCCTCGAATGGTCC
ACGATATGCTCATTTGCGTTATTGCCCCTTGCTGCACGATTTCTTCTGGA
CGCGGTGCATTCTGGGCAGGGGATGGCGTTACCTCCCTTTGGGTGTTCGG
GGGGCAGGGAAGAACTGAAACCAGGGGCACAGATTTTTCGCGAACACATC
AGGGGATAAAGATACGGACGCTAGCCAAGCGTACATGCTTCAACGACTTC
CACGAGTTCGACACCAGAACATGGTGAGGACTTGGTCTACGCCACGTTGG
TTGCTCTTGATTTCCTCCCACTCCCCTTACTCAACCCGAGTAGATCTAGT
CTTGGCATTATTATTTATACCGATTCTTATATACATCCACACCAACACTT
CGGAGCCAAATCGTTGCCGGGCGTCCAAACATTTCACTCGATTTTCTCGC
TCCGCTTTTTACGCATTCCACGGCAATGCTTTCACGGCGGCAGCGAGTGG
CGTGATCATGTCCAAGCCGGTGTTTGCCCCCCCTCGCGGCGAGGTCACAC
AGCCACGCTAGTGGTCGGTCGCCGATTGGTCGAGCCGAAGGTACCCGCTA
CACCATCGATTTCGCTTGAGTCTTCGAAGCCGTCGACAAACGGACACCCG
TGGGAAGGCAGTACTGACAGTGCACACGGCAGCAAGGCGAAAGGGGTAGG
GAAAAGGGAAAATTACAGTCCTGGGCTAAGAAGTCTGGCAAATGGTAACG
ATGAAACAAATGGCTCCTCCTCCCACGGTAAAATATCAGAGCAATGTTGT
TGGGGGGGGTGGTCACCAGAGAGAGTGGATTCTCAAGGAGACGAGACTGT
TAGCCACCGTGGAAACGTCGGACAAGGAGGCCGTAGGAGAGCTAAGAGTG
TGGAGAGACACGAGGAGAAGGAGTATGCTTCGAGGGAAATGTTTCTTATC
GGCGGAGCTGGGACCGATTCCATACGGGTGAGAGTCCGTAAAGGTCGATG
TGGAGGGTGCCAGCATCCTGCTGGAGTAACCCGGGCAGTCGTACCTGAGC
CCAACAAATATATCGTCCACAACTTTCGTTGCGTCGTCTTTGATGCAGGA
GTAGCCGTTGTGCTAACCGCAAAGAGAGTCATCGTCGGAGTGGTATGGAG
CTGGTGAAATCGAACGGTTAAAACACCACCTTAACCGAAACCTTCGAAGT
AATTTCCTGGTTTAGTGGAGGGAGATAGGACAAACGTCGTGGCAGTTAAT
CACCGGAAGTAGCACCTCATTTCCCTCGCCCATGGCCTCATTGCAATCGA
TTGATCACGCTCTGACAAAAGAACCTGGAAGTGGTACACCCGCAGCTGTG
GATCTTTGACTTTAATCACAGCTCCTGGGCTTGTGTAAACGCGGACAATG
GCGGCGGCGAAGGCCCTGGACCTCCACCTCCACCTGTCTTCGATCACACC
GCGACTCTCGTGGGCAACGAATATATTGTTGTGGTGGGCGGGGTTATGGT
TGGTCGGGCCTTGAACAGTCAGGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig13737:5852..7777-

>mRNA_H-elongata_contig13737.2630.1 ID=mRNA_H-elongata_contig13737.2630.1|Name=mRNA_H-elongata_contig13737.2630.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1998bp|location=Sequence derived from alignment at H-elongata_contig13737:5852..7777- (Himanthalia elongata Himel1 dioecious)
ACAGCTCTTTTCGAGGGAGAGCTGTACCTATTCGGTGGCCTTGACGCCGG
ACCGTCCAACTCCCTGTGGGCCTTGAACATCCGTGACCTGCGCTGGCGGC
CTATTCGGACCAAAACCAAGATAGTGCCGGCACCCCGACAGGGACACACT
ATGTGCTACAGCTCTTTTCGAGGGAGAGCTGTACCTATTCGGTGGCCTTG
ACGCCGGACCGTCCAACTCCCTGTGGGCCTTGAACATCCGTGACCTGCGC
TGGCGGCCTATTCGGACCAAAACCAAGATAGTGCCGGCACCCCGACAGGG
ACACACTATGTGCTGGGATGGCGTTACCTCCCTTTGGGTGTTCGGGGGGC
AGGGAAGAACTGAAACCAGGGGCACAGATTTTTCGCGAACACATCAGGGG
ATAAAGATACGGACGCTAGCCAAGCGTACATGCTTCAACGACTTCCACGA
GTTCGACACCAGAACATGGGGATGGCGTTACCTCCCTTTGGGTGTTCGGG
GGGCAGGGAAGAACTGAAACCAGGGGCACAGATTTTTCGCGAACACATCA
GGGGATAAAGATACGGACGCTAGCCAAGCGTACATGCTTCAACGACTTCC
ACGAGTTCGACACCAGAACATGCGAGTGGCGTGATCATGTCCAAGCCGGT
GTTTGCCCCCCCTCGCGGCGAGGTCACACAGCCACGCTAGTGGTCGGTCG
CCGATTGGTCGAGCCGAAGGTACCCGCTACACCATCGATTTCGCTTGAGT
CTTCGAAGCCGTCGACAAACGGACACCCGTGGGAAGGCAGTACTGACAGT
GCACACGGCAGCAAGGCGAAAGGGGTAGGGAAAAGGGAAAATTACAGTCC
TGGGCTAAGAAGTCTGGCAAATGGTAACGATGAAACAAATGGCTCCTCCT
CCCACGGTAAAATATCAGAGCAATGTTGTTGGGGGGGGTGGTCACCAGAG
AGAGTGGATTCTCAAGGAGACGAGACTGTTAGCCACCGTGGAAACGTCGG
ACAAGGAGGCCGTAGGAGAGCTAAGAGTGTGGAGAGACACGAGGAGAAGG
AGTATGCTTCGAGGGAAATGTTTCTTATCGGCGGAGCTGGGACCGATTCC
ATACGGCGAGTGGCGTGATCATGTCCAAGCCGGTGTTTGCCCCCCCTCGC
GGCGAGGTCACACAGCCACGCTAGTGGTCGGTCGCCGATTGGTCGAGCCG
AAGGTACCCGCTACACCATCGATTTCGCTTGAGTCTTCGAAGCCGTCGAC
AAACGGACACCCGTGGGAAGGCAGTACTGACAGTGCACACGGCAGCAAGG
CGAAAGGGGTAGGGAAAAGGGAAAATTACAGTCCTGGGCTAAGAAGTCTG
GCAAATGGTAACGATGAAACAAATGGCTCCTCCTCCCACGGTAAAATATC
AGAGCAATGTTGTTGGGGGGGGTGGTCACCAGAGAGAGTGGATTCTCAAG
GAGACGAGACTGTTAGCCACCGTGGAAACGTCGGACAAGGAGGCCGTAGG
AGAGCTAAGAGTGTGGAGAGACACGAGGAGAAGGAGTATGCTTCGAGGGA
AATGTTTCTTATCGGCGGAGCTGGGACCGATTCCATACGGAACCTGGAAG
TGGTACACCCGCAGCTGTGGATCTTTGACTTTAATCACAGCTCCTGGGCT
TGTGTAAACGCGGACAATGGCGGCGGCGAAGGCCCTGGACCTCCACCTCC
ACCTGTCTTCGATCACACCGCGACTCTCGTGGGCAACGAATATATTGTTG
TGGTGGGCGGGGTTATGGTTGGTCGGGCCTTGAACAGTCAGGCAAACCTG
GAAGTGGTACACCCGCAGCTGTGGATCTTTGACTTTAATCACAGCTCCTG
GGCTTGTGTAAACGCGGACAATGGCGGCGGCGAAGGCCCTGGACCTCCAC
CTCCACCTGTCTTCGATCACACCGCGACTCTCGTGGGCAACGAATATATT
GTTGTGGTGGGCGGGGTTATGGTTGGTCGGGCCTTGAACAGTCAGGCA
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