mRNA_H-elongata_contig137002.2609.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137002.2609.1
Unique NamemRNA_H-elongata_contig137002.2609.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig137002.2609.1 vs. uniprot
Match: A0A6H5KJD0_9PHAE (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJD0_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.870e-43
Identity = 80/137 (58.39%), Postives = 96/137 (70.07%), Query Frame = 1 
Query:    1 WGWEAE--PPSMTAEQSRMLDITIEEVMISPLNSSIK-PEGGKSVVWRYMEGAQWRLEPVRGKRVSSFLLESLEWRKKERVDCVMERADSFKCEAVSGKLFVRGVCLLGRPLIWVPLGRDTYDFDREADIQFLIYTV 402
            W WE E  PPS+T EQ+ ML+ TI EV  SPL S      GG++ VWRY+EGAQWRLEPVRGKRVS F L++L WR+   VD V++RA +F  EA SGKLFVRG  LLGRPLIWV  G +      EA ++FL+YTV
Sbjct:   19 WSWECESPPPSLTPEQASMLETTIAEVQASPLCSDAAVANGGRTAVWRYLEGAQWRLEPVRGKRVSDFFLDTLAWRQDGGVDTVLDRAHTFVDEASSGKLFVRGTSLLGRPLIWVHAGWEDSASGPEASLRFLVYTV 155
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137002.2609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJD0_9PHAE1.870e-4358.39CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137002contigH-elongata_contig137002:1076..1495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue7.4e-33
Seed eggNOG ortholog2880.D8LGX4
EggNOG free text desc.intermembrane phospholipid transfer
EggNOG OGsKOG1470@1,KOG1470@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-14_001570.1
Exons1
Model size420
Cds size393
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.1002245-UTR-H-elongata_contig137002:1075..11021622929814.1002245-UTR-H-elongata_contig137002:1075..1102Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137002 1076..1102 +
1691679167.7275305-UTR-H-elongata_contig137002:1075..11021691679167.7275305-UTR-H-elongata_contig137002:1075..1102Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137002 1076..1102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.1156127-CDS-H-elongata_contig137002:1102..14951622929814.1156127-CDS-H-elongata_contig137002:1102..1495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137002 1103..1495 +
1691679167.7468598-CDS-H-elongata_contig137002:1102..14951691679167.7468598-CDS-H-elongata_contig137002:1102..1495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137002 1103..1495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137002.2609.1prot_H-elongata_contig137002.2609.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137002 1103..1495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137002.2609.1

>prot_H-elongata_contig137002.2609.1 ID=prot_H-elongata_contig137002.2609.1|Name=mRNA_H-elongata_contig137002.2609.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MTAEQSRMLDITIEEVMISPLNSSIKPEGGKSVVWRYMEGAQWRLEPVRG
KRVSSFLLESLEWRKKERVDCVMERADSFKCEAVSGKLFVRGVCLLGRPL
IWVPLGRDTYDFDREADIQFLIYTVVSRPL*
back to top

mRNA from alignment at H-elongata_contig137002:1076..1495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137002.2609.1 ID=mRNA_H-elongata_contig137002.2609.1|Name=mRNA_H-elongata_contig137002.2609.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig137002:1076..1495+ (Himanthalia elongata Himel1 dioecious)
TGGGGATGGGAGGCGGAACCTCCATCGATGACGGCAGAACAGTCTCGAAT
GTTGGACATTACCATCGAAGAAGTGATGATCTCGCCCCTGAACTCGAGCA
TCAAACCCGAGGGAGGCAAATCCGTGGTCTGGAGGTACATGGAGGGGGCA
CAGTGGCGTCTCGAGCCGGTTCGAGGAAAACGAGTGTCGTCGTTCCTTCT
CGAAAGCTTGGAGTGGCGAAAGAAGGAGAGAGTCGACTGTGTGATGGAAA
GAGCGGACTCCTTCAAGTGCGAGGCAGTCAGTGGAAAGCTATTTGTCAGG
GGCGTTTGTCTCCTTGGACGACCACTGATTTGGGTACCCCTGGGGCGGGA
TACCTATGACTTCGATCGCGAAGCAGACATTCAATTCTTAATATATACAG
TGGTGAGCCGACCACTCTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig137002:1076..1495+

>mRNA_H-elongata_contig137002.2609.1 ID=mRNA_H-elongata_contig137002.2609.1|Name=mRNA_H-elongata_contig137002.2609.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig137002:1076..1495+ (Himanthalia elongata Himel1 dioecious)
ATGACGGCAGAACAGTCTCGAATGTTGGACATTACCATCGAAGAAGTGAT
GATCTCGCCCCTGAACTCGAGCATCAAACCCGAGGGAGGCAAATCCGTGG
TCTGGAGGTACATGGAGGGGGCACAGTGGCGTCTCGAGCCGGTTCGAGGA
AAACGAGTGTCGTCGTTCCTTCTCGAAAGCTTGGAGTGGCGAAAGAAGGA
GAGAGTCGACTGTGTGATGGAAAGAGCGGACTCCTTCAAGTGCGAGGCAG
TCAGTGGAAAGCTATTTGTCAGGGGCGTTTGTCTCCTTGGACGACCACTG
ATTTGGGTACCCCTGGGGCGGGATACCTATGACTTCGATCGCGAAGCAGA
CATTCAATTCTTAATATATACAGTGGTGAGCCGACCACTCTGAATGACGG
CAGAACAGTCTCGAATGTTGGACATTACCATCGAAGAAGTGATGATCTCG
CCCCTGAACTCGAGCATCAAACCCGAGGGAGGCAAATCCGTGGTCTGGAG
GTACATGGAGGGGGCACAGTGGCGTCTCGAGCCGGTTCGAGGAAAACGAG
TGTCGTCGTTCCTTCTCGAAAGCTTGGAGTGGCGAAAGAAGGAGAGAGTC
GACTGTGTGATGGAAAGAGCGGACTCCTTCAAGTGCGAGGCAGTCAGTGG
AAAGCTATTTGTCAGGGGCGTTTGTCTCCTTGGACGACCACTGATTTGGG
TACCCCTGGGGCGGGATACCTATGACTTCGATCGCGAAGCAGACATTCAA
TTCTTAATATATACAGTGGTGAGCCGACCACTCTGA
back to top