mRNA_H-elongata_contig136580.2579.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136580.2579.1
Unique NamemRNA_H-elongata_contig136580.2579.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136580.2579.1 vs. uniprot
Match: A0A6H5K166_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K166_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 4.490e-40
Identity = 65/93 (69.89%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    1 DSDMLDRLGDHPHTNFRSLFDALLDAGYYLEVLGSDWTCFDADNYGAILVVDPEGEISDRERVKFERDIKEKGLSLVLFADWYSADMMKQVRY 279
            D+DMLDRLGDHPHTNFR+LF+ALLDAGYY+E+LGS+W+CFDA++YGA+LVVDPE E+   E+ K E D+KE+GLS+V+FADWYS D+M +VR+
Sbjct: 1135 DADMLDRLGDHPHTNFRTLFEALLDAGYYVEILGSNWSCFDAESYGALLVVDPEAELGQDEKAKLEMDVKERGLSVVVFADWYSTDVMSKVRF 1227
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BLAST of mRNA_H-elongata_contig136580.2579.1 vs. uniprot
Match: D7FUM0_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUM0_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.130e-39
Identity = 64/93 (68.82%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 DSDMLDRLGDHPHTNFRSLFDALLDAGYYLEVLGSDWTCFDADNYGAILVVDPEGEISDRERVKFERDIKEKGLSLVLFADWYSADMMKQVRY 279
            D+DMLDRLGDHPHTNFR+LF+ALLDAGYY+E+LGSDW+CFDA++YGA+LVVDPE E+   E+ K E D+ ++GLS+V+FADWYS D+M +VR+
Sbjct:  860 DADMLDRLGDHPHTNFRTLFEALLDAGYYVEILGSDWSCFDAESYGALLVVDPEAELGQDEKAKLEMDVNQRGLSVVVFADWYSTDVMSKVRF 952
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BLAST of mRNA_H-elongata_contig136580.2579.1 vs. uniprot
Match: A0A7S1EN25_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S1EN25_9CHLO)

HSP 1 Score: 116 bits (290), Expect = 1.900e-28
Identity = 52/92 (56.52%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    4 SDMLDRLGDHPHTNFRSLFDALLDAGYYLEVLGSDWTCFDADNYGAILVVDPEGEISDRERVKFERDIKEKGLSLVLFADWYSADMMKQVRY 279
            SD+LD  GDHPHTNF  L+D L  AGY++EVLG+ +TCFDA NYGA+L+VD E E S+ E  K +RD++E+GL +VLFA+WY+  MM+ +++
Sbjct:  119 SDVLDWHGDHPHTNFHELYDTLTSAGYFVEVLGAPFTCFDAKNYGALLMVDLEEEYSEAEVQKLQRDVREEGLGVVLFAEWYNVQMMESMKF 210
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BLAST of mRNA_H-elongata_contig136580.2579.1 vs. uniprot
Match: A0A7S2STK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STK6_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.270e-28
Identity = 51/92 (55.43%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    4 SDMLDRLGDHPHTNFRSLFDALLDAGYYLEVLGSDWTCFDADNYGAILVVDPEGEISDRERVKFERDIKEKGLSLVLFADWYSADMMKQVRY 279
            +DMLD  GDH HTNFR  +D L + GY++EVL +DWTCFDA NY A+LVVDPE E+  +E  K E D++ +GLSL++ ADWYS  +++ VR+
Sbjct:  118 TDMLDWTGDHLHTNFRRAYDVLRNEGYFVEVLTTDWTCFDARNYAALLVVDPEDEVFPQEAAKLENDVRLQGLSLIVLADWYSEPLVRSVRF 209
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BLAST of mRNA_H-elongata_contig136580.2579.1 vs. uniprot
Match: UPI000644B090 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B090)

HSP 1 Score: 114 bits (284), Expect = 2.140e-27
Identity = 47/85 (55.29%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:   25 GDHPHTNFRSLFDALLDAGYYLEVLGSDWTCFDADNYGAILVVDPEGEISDRERVKFERDIKEKGLSLVLFADWYSADMMKQVRY 279
            GDHPHTNFR+L+  L D GYYLE++GS  TCFD +NYGA+L+VDPE E    E  K E D++ +GL+L++FADWY+ D+M+++++
Sbjct:  628 GDHPHTNFRNLYQRLRDIGYYLEIIGSPLTCFDPENYGALLIVDPEEEFFPAEIKKIEEDVRSRGLNLIVFADWYNLDIMEKIKF 712
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BLAST of mRNA_H-elongata_contig136580.2579.1 vs. uniprot
Match: A0A232EJF7_9HYME (Peptidase_S8 domain-containing protein n=2 Tax=Pteromalinae TaxID=272242 RepID=A0A232EJF7_9HYME)

HSP 1 Score: 113 bits (282), Expect = 4.000e-27
Identity = 51/92 (55.43%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    4 SDMLDRLGDHPHTNFRSLFDALLDAGYYLEVLGSDWTCFDADNYGAILVVDPEGEISDRERVKFERDIKEKGLSLVLFADWYSADMMKQVRY 279
            +D LD  GDH HTNF+ ++  L +AGYYLEVLG+ +TCF+A NYG +L+VDPE E    E +K ++D++EKGLSLV+FADWY+  +M+QV++
Sbjct:  667 NDPLDWNGDHIHTNFKDMYQHLRNAGYYLEVLGTPFTCFNAQNYGTLLIVDPEEEFFPDEVLKIKKDVEEKGLSLVVFADWYNVTVMRQVKF 758
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BLAST of mRNA_H-elongata_contig136580.2579.1 vs. uniprot
Match: UPI000644B4CF (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B4CF)

HSP 1 Score: 112 bits (281), Expect = 5.440e-27
Identity = 48/85 (56.47%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:   25 GDHPHTNFRSLFDALLDAGYYLEVLGSDWTCFDADNYGAILVVDPEGEISDRERVKFERDIKEKGLSLVLFADWYSADMMKQVRY 279
            GDHPHTNFR ++  L   GYYLE+LGS  TCFD+ NYGA+L+VDPE E    E  K E D++ KGL+L++FADWY+ DMM++ ++
Sbjct:  623 GDHPHTNFRGMYQMLRSRGYYLEILGSPLTCFDSQNYGALLIVDPEEEFFPAEIKKIEEDVRNKGLNLIVFADWYNGDMMEKFKF 707
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BLAST of mRNA_H-elongata_contig136580.2579.1 vs. uniprot
Match: A0A7S0M209_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M209_9CRYP)

HSP 1 Score: 106 bits (264), Expect = 1.420e-26
Identity = 46/92 (50.00%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    4 SDMLDRLGDHPHTNFRSLFDALLDAGYYLEVLGSDWTCFDADNYGAILVVDPEGEISDRERVKFERDIKEKGLSLVLFADWYSADMMKQVRY 279
            SD LD  GDHPHTNFR LF A+L  G++L++L  D+TCFDA  YG +++VD E    + E  K E D++E+GLSLV+ A+WY+A +M ++++
Sbjct:  105 SDFLDWNGDHPHTNFRGLFHAILAQGFFLDILRRDFTCFDATQYGVLMIVDSEDAFGEEEARKLEGDVRERGLSLVVLAEWYNAQVMAKIKF 196
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BLAST of mRNA_H-elongata_contig136580.2579.1 vs. uniprot
Match: X6LAW1_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LAW1_RETFI)

HSP 1 Score: 105 bits (263), Expect = 1.430e-26
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 DSDMLDRLGDHPHTNFRSLFDALLDAGYYLEVLGSDWTCFDADNYGAILVVDPEGEISDRERVKFERDIKEKGLSLVLFADWYSADMMKQVRY 279
            D DMLD  GDH HTN+  L+DAL D GY++EVLG+D+TC +A +Y A+++VDPE E  + E  K E DI + GLSLV+ ADWY+  + +++R+
Sbjct:   24 DKDMLDWTGDHLHTNYHGLYDALKDKGYFVEVLGTDYTCVNATHYAALIIVDPEEEFFEEEIEKLEDDILQHGLSLVIVADWYNEKIAERIRF 116
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BLAST of mRNA_H-elongata_contig136580.2579.1 vs. uniprot
Match: A0A7S0QWX4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QWX4_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 1.250e-25
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:    7 DMLDRLGDHPHTNFRSLFDALLDAGYYLEVLGSDWTCFDADNYGAILVVDPEGEISDRERVKFERDIKEKGLSLVLFADWYSADMMKQVRY 279
            D+LD  GDHPHTN+  +F+ L  AGYY+E+LGS +TCFDA  Y A+L+VD E E    E  K   DI++KGLSLV+FA+WY  D M ++R+
Sbjct:  135 DILDWNGDHPHTNYHDMFEQLRKAGYYVEMLGSPFTCFDASLYHAVLLVDAEEEYHPEEVAKITEDIRQKGLSLVVFAEWYDVDTMVKMRF 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136580.2579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K166_9PHAE4.490e-4069.89Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D7FUM0_ECTSI1.130e-3968.82Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7S1EN25_9CHLO1.900e-2856.52Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
A0A7S2STK6_9STRA3.270e-2855.43Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
UPI000644B0902.140e-2755.29hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A232EJF7_9HYME4.000e-2755.43Peptidase_S8 domain-containing protein n=2 Tax=Pte... [more]
UPI000644B4CF5.440e-2756.47hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7S0M209_9CRYP1.420e-2650.00Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
X6LAW1_RETFI1.430e-2651.61Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A7S0QWX4_9CHLO1.250e-2553.85Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136580contigH-elongata_contig136580:153..949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue6e-34
Seed eggNOG ortholog2880.D7FUM0
Preferred nameMBTPS1
KEGG koko:K08653
KEGG Pathwayko04141,map04141
GOsGO:0000139,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0005794,GO:0005795,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006606,GO:0006629,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006970,GO:0006972,GO:0006984,GO:0006986,GO:0006991,GO:0006996,GO:0007033,GO:0007040,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008237,GO:0009628,GO:0009651,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0017038,GO:0017171,GO:0019216,GO:0019218,GO:0019219,GO:0019222,GO:0019538,GO:0023052,GO:0030968,GO:0031090,GO:0031293,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031984,GO:0032933,GO:0033036,GO:0033365,GO:0033554,GO:0033619,GO:0034504,GO:0034613,GO:0034620,GO:0034976,GO:0035103,GO:0035966,GO:0035967,GO:0036211,GO:0036500,GO:0042175,GO:0042221,GO:0042538,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045540,GO:0045893,GO:0045935,GO:0045944,GO:0046890,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050810,GO:0050896,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0062012,GO:0065007,GO:0070011,GO:0070013,GO:0070727,GO:0070887,GO:0071310,GO:0071501,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0080171,GO:0090181,GO:0098588,GO:0098791,GO:0098827,GO:0106118,GO:0140096,GO:1901564,GO:1902680,GO:1902930,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG1404@1,KOG4266@2759
EC3.4.21.112
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136580.2579.1prot_H-elongata_contig136580.2579.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136580 153..940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.6419494-CDS-H-elongata_contig136580:152..3241622929810.6419494-CDS-H-elongata_contig136580:152..324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136580 153..324 -
1691679166.426539-CDS-H-elongata_contig136580:152..3241691679166.426539-CDS-H-elongata_contig136580:152..324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136580 153..324 -
1622929810.6562736-CDS-H-elongata_contig136580:839..9401622929810.6562736-CDS-H-elongata_contig136580:839..940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136580 840..940 -
1691679166.440439-CDS-H-elongata_contig136580:839..9401691679166.440439-CDS-H-elongata_contig136580:839..940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136580 840..940 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.6742349-UTR-H-elongata_contig136580:940..9491622929810.6742349-UTR-H-elongata_contig136580:940..949Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136580 941..949 -
1691679166.4500499-UTR-H-elongata_contig136580:940..9491691679166.4500499-UTR-H-elongata_contig136580:940..949Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136580 941..949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136580.2579.1

>prot_H-elongata_contig136580.2579.1 ID=prot_H-elongata_contig136580.2579.1|Name=mRNA_H-elongata_contig136580.2579.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MLDRLGDHPHTNFRSLFDALLDAGYYLEVLGSDWTCFDADNYGAILVVDP
EGEISDRERVKFERDIKEKGLSLVLFADWYSADMMKQVRY*
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mRNA from alignment at H-elongata_contig136580:153..949-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136580.2579.1 ID=mRNA_H-elongata_contig136580.2579.1|Name=mRNA_H-elongata_contig136580.2579.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=797bp|location=Sequence derived from alignment at H-elongata_contig136580:153..949- (Himanthalia elongata Himel1 dioecious)
GACTCGGACATGCTGGACCGTCTGGGAGATCACCCCCACACTAATTTCCG
TTCGCTGTTCGATGCTCTCCTCGACGCGGGGTACTACCTGGAGGTCCTCG
GATCAGACTGGTAAAGACTGTAGTGAAACTGGCGAAAGGGGCATAGATGA
CATTATATGATATGATACATGATATAGCATTATATAAAGGTAGAAAAAGC
TGGAATAGTATTTAATACTATTAATAATACTGTACGAAGTTATTAAATAC
TGGTAATATTGGTAATATCAATATCGCATATGTCCACTGTACCATAAGGG
AATCCCTATTTGCAACAGATGATGTGTTGCAACATGGTCGACGACGCCTC
GAGAACCACCCCACAACAAACCCCCCAAATTATGGGTTTACCTATTTTCA
ACCCATGAGTTAGAAGTTAGAACCTAACTCAAGCACGCATGGGATGGAAA
CCCCGGGGTAGCACACCTTACTTACCCCCCCCCGAGCACCCCATGAGTGC
TTAGTGTGGGTTAGGGTTAGGGGCGGGTTGGGTCAAACAGTATATATATG
GTTTCAGAGAAACGACTATTTTACTCTGCATGAAATCCCCCCTCTCCCTC
TAACATACCTGGATAACTACGGCAGGACTTGCTTCGATGCGGATAACTAC
GGGGCCATCCTGGTGGTAGATCCCGAGGGGGAAATTAGCGACCGTGAGAG
GGTCAAGTTCGAGCGCGACATCAAGGAGAAGGGGTTGTCGCTCGTTCTAT
TCGCCGACTGGTACAGCGCTGATATGATGAAGCAGGTAAGATATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig136580:153..949-

>mRNA_H-elongata_contig136580.2579.1 ID=mRNA_H-elongata_contig136580.2579.1|Name=mRNA_H-elongata_contig136580.2579.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig136580:153..949- (Himanthalia elongata Himel1 dioecious)
ATGCTGGACCGTCTGGGAGATCACCCCCACACTAATTTCCGTTCGCTGTT
CGATGCTCTCCTCGACGCGGGGTACTACCTGGAGGTCCTCGGATCAGACT
GATGCTGGACCGTCTGGGAGATCACCCCCACACTAATTTCCGTTCGCTGT
TCGATGCTCTCCTCGACGCGGGGTACTACCTGGAGGTCCTCGGATCAGAC
TGGACTTGCTTCGATGCGGATAACTACGGGGCCATCCTGGTGGTAGATCC
CGAGGGGGAAATTAGCGACCGTGAGAGGGTCAAGTTCGAGCGCGACATCA
AGGAGAAGGGGTTGTCGCTCGTTCTATTCGCCGACTGGTACAGCGCTGAT
ATGATGAAGCAGGTAAGATATTAAGACTTGCTTCGATGCGGATAACTACG
GGGCCATCCTGGTGGTAGATCCCGAGGGGGAAATTAGCGACCGTGAGAGG
GTCAAGTTCGAGCGCGACATCAAGGAGAAGGGGTTGTCGCTCGTTCTATT
CGCCGACTGGTACAGCGCTGATATGATGAAGCAGGTAAGATATTAA
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