mRNA_H-elongata_contig135989.2537.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135989.2537.1
Unique NamemRNA_H-elongata_contig135989.2537.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig135989.2537.1 vs. uniprot
Match: UPI00074041C7 (centrin-1-like n=1 Tax=Lepisosteus oculatus TaxID=7918 RepID=UPI00074041C7)

HSP 1 Score: 86.3 bits (212), Expect = 6.490e-21
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 QSEKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 138
            Q+EKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGEN+TDEEL
Sbjct:   24 QAEKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGENLTDEEL 69
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BLAST of mRNA_H-elongata_contig135989.2537.1 vs. uniprot
Match: A0A2C9K1N0_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K1N0_BIOGL)

HSP 1 Score: 87.0 bits (214), Expect = 2.160e-20
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    4 SEKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 138
            SEKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL
Sbjct:   99 SEKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 143
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BLAST of mRNA_H-elongata_contig135989.2537.1 vs. uniprot
Match: A0A7S3HKK2_9STRA (Hypothetical protein n=4 Tax=cellular organisms TaxID=131567 RepID=A0A7S3HKK2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.550e-20
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    4 SEKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 138
            SE+DS+EEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL
Sbjct:   36 SERDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 80
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BLAST of mRNA_H-elongata_contig135989.2537.1 vs. uniprot
Match: D8LDH9_ECTSI (Centrin n=4 Tax=Eukaryota TaxID=2759 RepID=D8LDH9_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.950e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    4 SEKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 138
            SEKDS+EEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL
Sbjct:   90 SEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 134
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BLAST of mRNA_H-elongata_contig135989.2537.1 vs. uniprot
Match: A0A1V9ZCQ4_9STRA (Caltractin n=6 Tax=Stramenopiles TaxID=33634 RepID=A0A1V9ZCQ4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.710e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    4 SEKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 138
            SEKDS+EEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL
Sbjct:   96 SEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 140
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BLAST of mRNA_H-elongata_contig135989.2537.1 vs. uniprot
Match: A0A7R9UP51_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UP51_DIALT)

HSP 1 Score: 84.7 bits (208), Expect = 1.130e-19
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    4 SEKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 138
            SEKDS+EEILKAFRLFDDDETGKISF+NLKRVAKELGENMTDEEL
Sbjct:  106 SEKDSREEILKAFRLFDDDETGKISFKNLKRVAKELGENMTDEEL 150
[Close]
BLAST of mRNA_H-elongata_contig135989.2537.1 vs. uniprot
Match: A0A024GNG8_9STRA (Uncharacterized protein n=21 Tax=Stramenopiles TaxID=33634 RepID=A0A024GNG8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.220e-19
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    4 SEKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 138
            SEKDSKEEI+KAFRLFDDDETGKI+FRNLKRVAKELGENMTDEEL
Sbjct:   99 SEKDSKEEIIKAFRLFDDDETGKITFRNLKRVAKELGENMTDEEL 143
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BLAST of mRNA_H-elongata_contig135989.2537.1 vs. uniprot
Match: A0A0S4J7U6_BODSA (Centrin, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4J7U6_BODSA)

HSP 1 Score: 84.7 bits (208), Expect = 1.340e-19
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    4 SEKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 138
            SEKDS+EEILKAFRLFDDDETGKISF+NLKRVAKELGENMTDEEL
Sbjct:   88 SEKDSREEILKAFRLFDDDETGKISFKNLKRVAKELGENMTDEEL 132
[Close]
BLAST of mRNA_H-elongata_contig135989.2537.1 vs. uniprot
Match: A0A813A1S0_SYMMI (Calmodulin n=15 Tax=Sar TaxID=2698737 RepID=A0A813A1S0_SYMMI)

HSP 1 Score: 84.7 bits (208), Expect = 1.370e-19
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    4 SEKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 138
            SE+DS+EEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL
Sbjct:   89 SERDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 133
[Close]
BLAST of mRNA_H-elongata_contig135989.2537.1 vs. uniprot
Match: A0A0M0JBM6_9EUKA (Centrin n=4 Tax=Eukaryota TaxID=2759 RepID=A0A0M0JBM6_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 1.400e-19
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    4 SEKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 138
            SEKDS+EEILKAFRLFDDDETGKISF+NLKRVAKELGENMTDEEL
Sbjct:   90 SEKDSREEILKAFRLFDDDETGKISFKNLKRVAKELGENMTDEEL 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135989.2537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00074041C76.490e-2195.65centrin-1-like n=1 Tax=Lepisosteus oculatus TaxID=... [more]
A0A2C9K1N0_BIOGL2.160e-20100.00Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A7S3HKK2_9STRA3.550e-2095.56Hypothetical protein n=4 Tax=cellular organisms Ta... [more]
D8LDH9_ECTSI4.950e-2097.78Centrin n=4 Tax=Eukaryota TaxID=2759 RepID=D8LDH9_... [more]
A0A1V9ZCQ4_9STRA5.710e-2097.78Caltractin n=6 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A7R9UP51_DIALT1.130e-1995.56Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A024GNG8_9STRA1.220e-1995.56Uncharacterized protein n=21 Tax=Stramenopiles Tax... [more]
A0A0S4J7U6_BODSA1.340e-1995.56Centrin, putative n=1 Tax=Bodo saltans TaxID=75058... [more]
A0A813A1S0_SYMMI1.370e-1995.56Calmodulin n=15 Tax=Sar TaxID=2698737 RepID=A0A813... [more]
A0A0M0JBM6_9EUKA1.400e-1995.56Centrin n=4 Tax=Eukaryota TaxID=2759 RepID=A0A0M0J... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135989contigH-elongata_contig135989:1028..1165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue3.2e-15
Seed eggNOG ortholog112098.XP_008618385.1
Preferred nameCETN1
KEGG koko:K10840,ko:K16465
KEGG Pathwayko03420,map03420
GOsGO:0000003,GO:0000086,GO:0000109,GO:0000226,GO:0000278,GO:0000715,GO:0000922,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007099,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0015631,GO:0016043,GO:0019953,GO:0022402,GO:0022406,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0031023,GO:0031683,GO:0031974,GO:0031981,GO:0032391,GO:0032465,GO:0032501,GO:0032504,GO:0032795,GO:0032991,GO:0033554,GO:0034605,GO:0034622,GO:0034641,GO:0035869,GO:0036064,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0044877,GO:0046483,GO:0046872,GO:0048232,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051298,GO:0051302,GO:0051640,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0060271,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070925,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0090304,GO:0097458,GO:0097711,GO:0097730,GO:0097731,GO:0097733,GO:0098534,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1903047,GO:1990391
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0028@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.0699742-CDS-H-elongata_contig135989:1027..11651622929807.0699742-CDS-H-elongata_contig135989:1027..1165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135989 1028..1165 +
1691679164.93449-CDS-H-elongata_contig135989:1027..11651691679164.93449-CDS-H-elongata_contig135989:1027..1165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135989 1028..1165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135989.2537.1prot_H-elongata_contig135989.2537.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135989 1028..1165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135989.2537.1

>prot_H-elongata_contig135989.2537.1 ID=prot_H-elongata_contig135989.2537.1|Name=mRNA_H-elongata_contig135989.2537.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
QSEKDSKEEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL
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mRNA from alignment at H-elongata_contig135989:1028..1165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135989.2537.1 ID=mRNA_H-elongata_contig135989.2537.1|Name=mRNA_H-elongata_contig135989.2537.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig135989:1028..1165+ (Himanthalia elongata Himel1 dioecious)
CAGAGCGAGAAGGATTCTAAGGAAGAGATCTTGAAGGCGTTTCGGCTGTT
CGACGACGACGAGACGGGGAAGATTTCGTTCCGTAACCTTAAGAGGGTGG
CAAAAGAGCTCGGAGAGAACATGACAGACGAGGAGCTA
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Coding sequence (CDS) from alignment at H-elongata_contig135989:1028..1165+

>mRNA_H-elongata_contig135989.2537.1 ID=mRNA_H-elongata_contig135989.2537.1|Name=mRNA_H-elongata_contig135989.2537.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig135989:1028..1165+ (Himanthalia elongata Himel1 dioecious)
CAGAGCGAGAAGGATTCTAAGGAAGAGATCTTGAAGGCGTTTCGGCTGTT
CGACGACGACGAGACGGGGAAGATTTCGTTCCGTAACCTTAAGAGGGTGG
CAAAAGAGCTCGGAGAGAACATGACAGACGAGGAGCTACAGAGCGAGAAG
GATTCTAAGGAAGAGATCTTGAAGGCGTTTCGGCTGTTCGACGACGACGA
GACGGGGAAGATTTCGTTCCGTAACCTTAAGAGGGTGGCAAAAGAGCTCG
GAGAGAACATGACAGACGAGGAGCTA
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