mRNA_H-elongata_contig135885.2531.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135885.2531.1
Unique NamemRNA_H-elongata_contig135885.2531.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135885.2531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135885contigH-elongata_contig135885:1328..1771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929806.5101855-CDS-H-elongata_contig135885:1327..17141622929806.5101855-CDS-H-elongata_contig135885:1327..1714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135885 1328..1714 +
1691679164.72882-CDS-H-elongata_contig135885:1327..17141691679164.72882-CDS-H-elongata_contig135885:1327..1714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135885 1328..1714 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929806.5253808-UTR-H-elongata_contig135885:1714..17711622929806.5253808-UTR-H-elongata_contig135885:1714..1771Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135885 1715..1771 +
1691679164.7371254-UTR-H-elongata_contig135885:1714..17711691679164.7371254-UTR-H-elongata_contig135885:1714..1771Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135885 1715..1771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135885.2531.1prot_H-elongata_contig135885.2531.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135885 1328..1714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135885.2531.1

>prot_H-elongata_contig135885.2531.1 ID=prot_H-elongata_contig135885.2531.1|Name=mRNA_H-elongata_contig135885.2531.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
PPLAADVLKTRPLQRRREAPRHERKRFTTQWSRKLRKLAGSGSASSQPSL
VLEKAVNQDVKASQKNISTVHTRTRQRRHFRQTKKPYHQPLTADDIKHYD
VCVCTVEWIKGRWIKCCLLPLPADFAAV*
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mRNA from alignment at H-elongata_contig135885:1328..1771+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135885.2531.1 ID=mRNA_H-elongata_contig135885.2531.1|Name=mRNA_H-elongata_contig135885.2531.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=444bp|location=Sequence derived from alignment at H-elongata_contig135885:1328..1771+ (Himanthalia elongata Himel1 dioecious)
CCACCTCTTGCAGCCGACGTATTGAAAACGCGACCGTTGCAGAGGCGACG
TGAGGCTCCGCGACATGAGAGAAAGAGGTTCACAACGCAATGGTCACGGA
AGCTACGGAAGCTTGCTGGATCTGGGTCTGCTAGCTCCCAACCGAGCCTT
GTCCTCGAAAAGGCCGTGAATCAAGATGTGAAGGCGAGCCAAAAAAATAT
CTCGACGGTTCACACGCGGACACGCCAGCGACGGCATTTTCGCCAGACGA
AGAAGCCGTACCATCAGCCACTAACAGCTGACGACATTAAACACTACGAT
GTGTGCGTGTGTACGGTCGAGTGGATCAAAGGGCGGTGGATCAAGTGCTG
CTTGCTACCTCTCCCTGCCGATTTTGCCGCCGTCTAATTTAATACTTTTA
TAATCTAGCATAGTATAAATTAAATTATTAGCCCATTTAGTATA
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Coding sequence (CDS) from alignment at H-elongata_contig135885:1328..1771+

>mRNA_H-elongata_contig135885.2531.1 ID=mRNA_H-elongata_contig135885.2531.1|Name=mRNA_H-elongata_contig135885.2531.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig135885:1328..1771+ (Himanthalia elongata Himel1 dioecious)
CCACCTCTTGCAGCCGACGTATTGAAAACGCGACCGTTGCAGAGGCGACG
TGAGGCTCCGCGACATGAGAGAAAGAGGTTCACAACGCAATGGTCACGGA
AGCTACGGAAGCTTGCTGGATCTGGGTCTGCTAGCTCCCAACCGAGCCTT
GTCCTCGAAAAGGCCGTGAATCAAGATGTGAAGGCGAGCCAAAAAAATAT
CTCGACGGTTCACACGCGGACACGCCAGCGACGGCATTTTCGCCAGACGA
AGAAGCCGTACCATCAGCCACTAACAGCTGACGACATTAAACACTACGAT
GTGTGCGTGTGTACGGTCGAGTGGATCAAAGGGCGGTGGATCAAGTGCTG
CTTGCTACCTCTCCCTGCCGATTTTGCCGCCGTCTAACCACCTCTTGCAG
CCGACGTATTGAAAACGCGACCGTTGCAGAGGCGACGTGAGGCTCCGCGA
CATGAGAGAAAGAGGTTCACAACGCAATGGTCACGGAAGCTACGGAAGCT
TGCTGGATCTGGGTCTGCTAGCTCCCAACCGAGCCTTGTCCTCGAAAAGG
CCGTGAATCAAGATGTGAAGGCGAGCCAAAAAAATATCTCGACGGTTCAC
ACGCGGACACGCCAGCGACGGCATTTTCGCCAGACGAAGAAGCCGTACCA
TCAGCCACTAACAGCTGACGACATTAAACACTACGATGTGTGCGTGTGTA
CGGTCGAGTGGATCAAAGGGCGGTGGATCAAGTGCTGCTTGCTACCTCTC
CCTGCCGATTTTGCCGCCGTCTAA
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