mRNA_H-elongata_contig135512.2511.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135512.2511.1
Unique NamemRNA_H-elongata_contig135512.2511.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig135512.2511.1 vs. uniprot
Match: D7FKT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT2_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 3.530e-30
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:    4 VHRQINKQVKATVWMAKDYPLKLKHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVCV 192
            VHRQINKQVKATVWMA DYPLKLKHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKV V
Sbjct:  120 VHRQINKQVKATVWMAHDYPLKLKHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSV 182
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BLAST of mRNA_H-elongata_contig135512.2511.1 vs. uniprot
Match: A0A6H5KD68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD68_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.070e-29
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:    4 VHRQINKQVKATVWMAKDYPLKLKHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVCV 192
            VHRQINKQVKATVWMA DYPLKL+HIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKV V
Sbjct: 1380 VHRQINKQVKATVWMAHDYPLKLRHIMPALEILSVRDDMAARLRSVLSLAGIPQEGFPVKVSV 1442
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135512.2511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKT2_ECTSI3.530e-3096.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD68_9PHAE1.070e-2995.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135512contigH-elongata_contig135512:183..584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1e-24
Seed eggNOG ortholog2880.D7FKT2
KEGG koko:K21437
GOsGO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006621,GO:0008104,GO:0008150,GO:0009889,GO:0009987,GO:0010556,GO:0010869,GO:0010941,GO:0012505,GO:0019222,GO:0031323,GO:0032507,GO:0033036,GO:0033365,GO:0034613,GO:0035437,GO:0042981,GO:0043067,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045185,GO:0048471,GO:0050789,GO:0050794,GO:0051179,GO:0051235,GO:0051641,GO:0051651,GO:0060255,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0072595,GO:2000209
EggNOG free text desc.protein retention in ER lumen
EggNOG OGsKOG0522@1,KOG0522@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.6898048-CDS-H-elongata_contig135512:182..2931622929804.6898048-CDS-H-elongata_contig135512:182..293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135512 183..293 +
1691679164.0409734-CDS-H-elongata_contig135512:182..2931691679164.0409734-CDS-H-elongata_contig135512:182..293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135512 183..293 +
1622929804.7094276-CDS-H-elongata_contig135512:503..5841622929804.7094276-CDS-H-elongata_contig135512:503..584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135512 504..584 +
1691679164.0551305-CDS-H-elongata_contig135512:503..5841691679164.0551305-CDS-H-elongata_contig135512:503..584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135512 504..584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135512.2511.1prot_H-elongata_contig135512.2511.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135512 183..584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135512.2511.1

>prot_H-elongata_contig135512.2511.1 ID=prot_H-elongata_contig135512.2511.1|Name=mRNA_H-elongata_contig135512.2511.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
QVHRQINKQVKATVWMAKDYPLKLKHIMPALEILSVRDDMAARLRSVLSL
AGIPQEGFPVKVCV
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mRNA from alignment at H-elongata_contig135512:183..584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135512.2511.1 ID=mRNA_H-elongata_contig135512.2511.1|Name=mRNA_H-elongata_contig135512.2511.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=402bp|location=Sequence derived from alignment at H-elongata_contig135512:183..584+ (Himanthalia elongata Himel1 dioecious)
CAGGTGCATCGGCAGATAAACAAGCAAGTGAAGGCCACCGTGTGGATGGC
GAAGGACTACCCCTTGAAGCTGAAGCACATCATGCCCGCACTAGAGATCC
TCTCCGTCAGGGTAAGAGACATCGTAGACAGGATATGATAGCTCGGGTAG
GAGACGTGATTGCCTCCGGACACATGTTTATCATGCTCCTCGTCCTCCCC
TCATCACCGTGATGACCGTGATGATTTTATACACACGACAACACGCCTTC
CTCCTGCTTGATCCGCGCGCATCGATTCATGCCTTCCACACGATGATCCT
CGATGCGTTGTCGTGTTATAGGACGACATGGCGGCACGTCTTCGCTCGGT
CTTGTCACTCGCGGGTATACCACAAGAAGGCTTCCCGGTCAAGGTGTGTG
TG
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Coding sequence (CDS) from alignment at H-elongata_contig135512:183..584+

>mRNA_H-elongata_contig135512.2511.1 ID=mRNA_H-elongata_contig135512.2511.1|Name=mRNA_H-elongata_contig135512.2511.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig135512:183..584+ (Himanthalia elongata Himel1 dioecious)
CAGGTGCATCGGCAGATAAACAAGCAAGTGAAGGCCACCGTGTGGATGGC
GAAGGACTACCCCTTGAAGCTGAAGCACATCATGCCCGCACTAGAGATCC
TCTCCGTCAGGCAGGTGCATCGGCAGATAAACAAGCAAGTGAAGGCCACC
GTGTGGATGGCGAAGGACTACCCCTTGAAGCTGAAGCACATCATGCCCGC
ACTAGAGATCCTCTCCGTCAGGGACGACATGGCGGCACGTCTTCGCTCGG
TCTTGTCACTCGCGGGTATACCACAAGAAGGCTTCCCGGTCAAGGTGTGT
GTGGACGACATGGCGGCACGTCTTCGCTCGGTCTTGTCACTCGCGGGTAT
ACCACAAGAAGGCTTCCCGGTCAAGGTGTGTGTG
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