mRNA_H-elongata_contig135485.2509.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135485.2509.1
Unique NamemRNA_H-elongata_contig135485.2509.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig135485.2509.1 vs. uniprot
Match: D7FP53_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP53_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 2.020e-61
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = 1
Query:    1 VNRNKFDAAICVGTCGVYRRSALAPFGGTAAIAYSEDVHTGFNCKRLGYKVKYIPQVMAMGTCPHEPRALFMQHYRWCMGSTTLLCNAEFWRSNLTVRQKICYLSGMLYYAATA 342
            VNRNKFDA+ICVGTCGVYRR ALAPFGGTAAI YSEDVHTGFNC +LGYKVKY+PQVMAMGTCP EPRA FMQ YRWCMGSTTLL N EFW+S LT +QK+CYLSGM YY+ATA
Sbjct:  955 VNRNKFDASICVGTCGVYRREALAPFGGTAAIGYSEDVHTGFNCIQLGYKVKYVPQVMAMGTCPDEPRAFFMQQYRWCMGSTTLLSNREFWQSTLTRKQKLCYLSGMFYYSATA 1068          
BLAST of mRNA_H-elongata_contig135485.2509.1 vs. uniprot
Match: A0A6H5KYP8_9PHAE (GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP8_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.450e-54
Identity = 96/154 (62.34%), Postives = 104/154 (67.53%), Query Frame = 1
Query:    1 VNRNKFDAAICVGTCGVYRRSALAPFGGTAAIAYSEDVHTGFNCKRLGYKV---------------------------------------KYIPQVMAMGTCPHEPRALFMQHYRWCMGSTTLLCNAEFWRSNLTVRQKICYLSGMLYYAATAM 345
            VNR+KFDA+ICVGTCGVYRR ALAPFGGTAAI YSEDVHTGFNC +LGYKV                                       KY+PQVMAMGTCP EPRA FMQ YRWCMGSTTLL N EFW+S LT +QK+CYLSGM YY+ATAM
Sbjct:  891 VNRDKFDASICVGTCGVYRREALAPFGGTAAIGYSEDVHTGFNCIQLGYKVRDAWTCVSGCTLTGTFARATACSGISFCHSLSFYSMYQVKYVPQVMAMGTCPDEPRAFFMQQYRWCMGSTTLLSNREFWQSTLTRKQKLCYLSGMFYYSATAM 1044          
BLAST of mRNA_H-elongata_contig135485.2509.1 vs. uniprot
Match: Q98523_PBCV1 (Glyco_trans_2-like domain-containing protein n=4 Tax=Chlorovirus TaxID=181083 RepID=Q98523_PBCV1)

HSP 1 Score: 157 bits (396), Expect = 2.850e-43
Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = 1
Query:    1 VNRNKFDAAICVGTCGVYRRSALAPFGGTAAIAYSEDVHTGFNCKRLGYKVKYIPQVMAMGTCPHEPRALFMQHYRWCMGSTTLLCNAEFWRSNLTVRQKICYLSGMLYYAATA 342
            V+R  + AA+CVGTC VYRR +L PFGGTA I +SEDVHTGF+    G+K++Y+P  +A G CP+E ++ F Q YRW +GSTTL  N EFW+SNLT RQKIC+LSGMLY+  TA
Sbjct:  254 VSRETYGAAVCVGTCAVYRRESLVPFGGTAEIGFSEDVHTGFSVVNDGWKLRYLPLNLAKGVCPYELKSFFSQQYRWALGSTTLCFNPEFWKSNLTFRQKICFLSGMLYFQTTA 367          
BLAST of mRNA_H-elongata_contig135485.2509.1 vs. uniprot
Match: A0A814Q2D6_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814Q2D6_9BILA)

HSP 1 Score: 150 bits (379), Expect = 9.650e-43
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 VNRNKFDAAICVGTCGVYRRSALAPFGGTAAIAYSEDVHTGFNCKRLGYKVKYIPQVMAMGTCPHEPRALFMQHYRWCMGSTTLLCNAEFWRSNLTVRQKICYLSGMLYYAATAM 345
            VNRN+F ++ICVGT  +YRR AL PFGGT  I +SED+HTGFN    G+ VKY+P  ++MG CP      F Q YRW  GST+L  N  FW+SNLTV QKICYLSGM YY+ATA+
Sbjct:  146 VNRNRFHSSICVGTSAIYRRKALIPFGGTYEIEHSEDLHTGFNATNHGWLVKYLPLNLSMGMCPDNLTTFFTQQYRWASGSTSLCLNKIFWKSNLTVIQKICYLSGMFYYSATAL 260          
BLAST of mRNA_H-elongata_contig135485.2509.1 vs. uniprot
Match: M3A7Q6_PSEFD (Glycosyltransferase family 2 protein (Fragment) n=1 Tax=Pseudocercospora fijiensis (strain CIRAD86) TaxID=383855 RepID=M3A7Q6_PSEFD)

HSP 1 Score: 155 bits (391), Expect = 1.540e-42
Identity = 72/115 (62.61%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 VNRNKFDAAICVGTCGVYRRSALAPFGGTAAIAYSEDVHTGFNCKRLGYKVKYIPQVMAMGTCPHEPRALFMQHYRWCMGSTTLLCNAEFWRSNLTVRQKICYLSGMLYYAATAM 345
            VNRN+F A+ICVG+  VYRR+AL   GGTA I +SEDVHTGF     G+KV+Y+P  +A G CP  PRA F Q  RWCMGSTTLL N +FWRS LT  QKICYLSGM+YY+A ++
Sbjct:  254 VNRNRFGASICVGSNAVYRRAALEEVGGTAEIGFSEDVHTGFYAVDRGWKVRYLPLCLACGICPDTPRAFFSQQMRWCMGSTTLLTNLDFWRSGLTPIQKICYLSGMMYYSAISL 368          
BLAST of mRNA_H-elongata_contig135485.2509.1 vs. uniprot
Match: A0A6A6F490_9PEZI (Glycosyltransferase family 2 protein n=1 Tax=Cercospora zeae-maydis SCOH1-5 TaxID=717836 RepID=A0A6A6F490_9PEZI)

HSP 1 Score: 154 bits (388), Expect = 1.950e-42
Identity = 70/115 (60.87%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 VNRNKFDAAICVGTCGVYRRSALAPFGGTAAIAYSEDVHTGFNCKRLGYKVKYIPQVMAMGTCPHEPRALFMQHYRWCMGSTTLLCNAEFWRSNLTVRQKICYLSGMLYYAATAM 345
            +NRN+F A+ICVG+  VYRR+AL   GGTA I +SEDVHTGF     G+KV+Y+P  +A G CP  PRA F Q  RWCMGSTTLL N +FWRS L+  QKICYLSGM+YY+A ++
Sbjct:  204 INRNRFGASICVGSNAVYRRAALEEVGGTAEIGFSEDVHTGFYAVNRGWKVRYLPLCLACGICPDTPRAFFSQQMRWCMGSTTLLTNMDFWRSKLSPIQKICYLSGMMYYSAISL 318          
BLAST of mRNA_H-elongata_contig135485.2509.1 vs. uniprot
Match: A7ITR6_PBCVM (Uncharacterized protein M186R n=9 Tax=Chlorovirus TaxID=181083 RepID=A7ITR6_PBCVM)

HSP 1 Score: 154 bits (389), Expect = 3.090e-42
Identity = 67/114 (58.77%), Postives = 86/114 (75.44%), Query Frame = 1
Query:    1 VNRNKFDAAICVGTCGVYRRSALAPFGGTAAIAYSEDVHTGFNCKRLGYKVKYIPQVMAMGTCPHEPRALFMQHYRWCMGSTTLLCNAEFWRSNLTVRQKICYLSGMLYYAATA 342
            V+R  F AA+CVGTC +YRR AL PFGGTA I +SEDVHTGF+    G+K+KY+P  +A G CP+E ++ F Q YRW +GSTTL  N  FW+S L++RQK+C+LSGMLY+  TA
Sbjct:  258 VSRESFGAAVCVGTCAMYRREALVPFGGTAEIGFSEDVHTGFSVVDAGWKLKYVPLNLAKGVCPYELKSFFSQQYRWALGSTTLCFNPHFWKSALSLRQKVCFLSGMLYFQTTA 371          
BLAST of mRNA_H-elongata_contig135485.2509.1 vs. uniprot
Match: K2RGT2_MACPH (Glycosyl transferase family 2 n=1 Tax=Macrophomina phaseolina (strain MS6) TaxID=1126212 RepID=K2RGT2_MACPH)

HSP 1 Score: 155 bits (391), Expect = 7.200e-42
Identity = 71/115 (61.74%), Postives = 85/115 (73.91%), Query Frame = 1
Query:    1 VNRNKFDAAICVGTCGVYRRSALAPFGGTAAIAYSEDVHTGFNCKRLGYKVKYIPQVMAMGTCPHEPRALFMQHYRWCMGSTTLLCNAEFWRSNLTVRQKICYLSGMLYYAATAM 345
            VNRN++ A+ICVG+  VYRR ALA  GGTA I YSEDVHTGF     G+ V+Y+P  +A G CP  PRA F Q  RWCMGSTTLL N EFWRS L+  QK+CYLSGM+YY+A ++
Sbjct:  398 VNRNRWGASICVGSNAVYRREALAEVGGTAEIGYSEDVHTGFGAVDRGWTVEYVPLCLAAGVCPDNPRAFFSQQMRWCMGSTTLLTNPEFWRSKLSFIQKVCYLSGMMYYSALSL 512          
BLAST of mRNA_H-elongata_contig135485.2509.1 vs. uniprot
Match: D7FQH7_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQH7_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 7.680e-42
Identity = 64/115 (55.65%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 VNRNKFDAAICVGTCGVYRRSALAPFGGTAAIAYSEDVHTGFNCKRLGYKVKYIPQVMAMGTCPHEPRALFMQHYRWCMGSTTLLCNAEFWRSNLTVRQKICYLSGMLYYAATAM 345
            VN ++F+AA+CVG+CG+YRR+A+ PFGG A I +SED++TG+    LGYKV+Y+P  +AMG CP EPR+ FMQ YRWCMG++TL+   EFW+S ++   K+C+ +GML+Y ATA+
Sbjct:  594 VNLDRFNAAVCVGSCGLYRRTAVEPFGGVAPIEHSEDMYTGYKMTELGYKVRYLPLCLAMGICPDEPRSFFMQQYRWCMGTSTLVLQKEFWQSEISKIHKLCFFNGMLFYLATAL 708          
BLAST of mRNA_H-elongata_contig135485.2509.1 vs. uniprot
Match: M1ICG9_9PHYC (Cellulose synthase catalytic subunit (UDP-forming) n=9 Tax=Chlorovirus TaxID=181083 RepID=M1ICG9_9PHYC)

HSP 1 Score: 153 bits (386), Expect = 9.880e-42
Identity = 69/114 (60.53%), Postives = 84/114 (73.68%), Query Frame = 1
Query:    1 VNRNKFDAAICVGTCGVYRRSALAPFGGTAAIAYSEDVHTGFNCKRLGYKVKYIPQVMAMGTCPHEPRALFMQHYRWCMGSTTLLCNAEFWRSNLTVRQKICYLSGMLYYAATA 342
            V+R+ F  A+CVGTC VYRR AL PFGGTA I +SEDVHTGF     G+K+KYIP  +A G CP+E ++ F Q YRW +GSTTL  N  FW+SNL+ RQK C+LSGMLY+  TA
Sbjct:  267 VSRDTFGGAVCVGTCAVYRREALVPFGGTAEIGFSEDVHTGFAVVDDGWKLKYIPLNLAKGVCPYELKSFFSQQYRWALGSTTLCTNPHFWKSNLSFRQKACFLSGMLYFQVTA 380          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135485.2509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP53_ECTSI2.020e-6184.21Cellulose synthase (UDP-forming), family GT2 n=1 T... [more]
A0A6H5KYP8_9PHAE1.450e-5462.34GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
Q98523_PBCV12.850e-4360.53Glyco_trans_2-like domain-containing protein n=4 T... [more]
A0A814Q2D6_9BILA9.650e-4360.00Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
M3A7Q6_PSEFD1.540e-4262.61Glycosyltransferase family 2 protein (Fragment) n=... [more]
A0A6A6F490_9PEZI1.950e-4260.87Glycosyltransferase family 2 protein n=1 Tax=Cerco... [more]
A7ITR6_PBCVM3.090e-4258.77Uncharacterized protein M186R n=9 Tax=Chlorovirus ... [more]
K2RGT2_MACPH7.200e-4261.74Glycosyl transferase family 2 n=1 Tax=Macrophomina... [more]
D7FQH7_ECTSI7.680e-4255.65Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
M1ICG9_9PHYC9.880e-4260.53Cellulose synthase catalytic subunit (UDP-forming)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135485contigH-elongata_contig135485:297..1024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.8
Seed ortholog evalue1.6e-52
Seed eggNOG ortholog2880.D7FP53
EggNOG free text desc.Glycosyl transferase family 21
EggNOG OGs2C0MJ@1,2S2MV@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.5562744-CDS-H-elongata_contig135485:296..4911622929804.5562744-CDS-H-elongata_contig135485:296..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135485 297..491 -
1691679164.006176-CDS-H-elongata_contig135485:296..4911691679164.006176-CDS-H-elongata_contig135485:296..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135485 297..491 -
1622929804.5716035-CDS-H-elongata_contig135485:874..10241622929804.5716035-CDS-H-elongata_contig135485:874..1024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135485 875..1024 -
1691679164.022063-CDS-H-elongata_contig135485:874..10241691679164.022063-CDS-H-elongata_contig135485:874..1024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135485 875..1024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135485.2509.1prot_H-elongata_contig135485.2509.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135485 297..1024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135485.2509.1

>prot_H-elongata_contig135485.2509.1 ID=prot_H-elongata_contig135485.2509.1|Name=mRNA_H-elongata_contig135485.2509.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
VNRNKFDAAICVGTCGVYRRSALAPFGGTAAIAYSEDVHTGFNCKRLGYK
VKYIPQVMAMGTCPHEPRALFMQHYRWCMGSTTLLCNAEFWRSNLTVRQK
ICYLSGMLYYAATAM
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mRNA from alignment at H-elongata_contig135485:297..1024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135485.2509.1 ID=mRNA_H-elongata_contig135485.2509.1|Name=mRNA_H-elongata_contig135485.2509.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=728bp|location=Sequence derived from alignment at H-elongata_contig135485:297..1024- (Himanthalia elongata Himel1 dioecious)
GTGAACCGAAACAAGTTCGACGCTGCCATCTGCGTGGGAACCTGCGGGGT CTACCGGCGATCTGCGTTGGCTCCTTTTGGTGGAACGGCCGCGATCGCGT ACTCGGAGGACGTGCACACCGGATTCAACTGCAAGCGGCTTGGCTATAAG GTACTTTCGAGGAAAATACTACATACTTAACTGTACATTCATTTTTAGGG GGAGGGCTCCAGGGTTTAAGAGGGTAAGTTAAGAGGGTATGTCGTATGTA GGTATATGTGTGTGTTCATTGGTGTGTGCACATTTGATTGGGTCTCTCTG AGTTTTTGAAGGGCCGCATCACGTCGGATTTAGCTGGTTTGTCGCGTCTG TGGGTTTTAGACACTGTTAAGTCACCCTCCCTCCAGCGCCATCTGGTGCG TGACAGACGCGTGGGCGGCAAAATGTGCCCGGGTTCGGTTTACTGTTGTA AAAATCTTCCCCTGTATCTCTCTCTATATATCTCTCTAGGCTCTGGCTGT GTGACTTGACTATGCATGCTGTGTCGACGGCAGGTCAAATACATCCCGCA GGTAATGGCCATGGGGACGTGCCCCCATGAGCCGCGGGCCCTGTTCATGC AGCACTATCGATGGTGTATGGGGAGCACGACGCTGTTATGCAACGCGGAG TTCTGGCGGTCAAATCTCACCGTGCGGCAAAAGATCTGCTACCTGAGCGG CATGCTCTACTACGCAGCCACGGCAATG
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Coding sequence (CDS) from alignment at H-elongata_contig135485:297..1024-

>mRNA_H-elongata_contig135485.2509.1 ID=mRNA_H-elongata_contig135485.2509.1|Name=mRNA_H-elongata_contig135485.2509.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig135485:297..1024- (Himanthalia elongata Himel1 dioecious)
GTGAACCGAAACAAGTTCGACGCTGCCATCTGCGTGGGAACCTGCGGGGT
CTACCGGCGATCTGCGTTGGCTCCTTTTGGTGGAACGGCCGCGATCGCGT
ACTCGGAGGACGTGCACACCGGATTCAACTGCAAGCGGCTTGGCTATAAG
GTGAACCGAAACAAGTTCGACGCTGCCATCTGCGTGGGAACCTGCGGGGT
CTACCGGCGATCTGCGTTGGCTCCTTTTGGTGGAACGGCCGCGATCGCGT
ACTCGGAGGACGTGCACACCGGATTCAACTGCAAGCGGCTTGGCTATAAG
GTCAAATACATCCCGCAGGTAATGGCCATGGGGACGTGCCCCCATGAGCC
GCGGGCCCTGTTCATGCAGCACTATCGATGGTGTATGGGGAGCACGACGC
TGTTATGCAACGCGGAGTTCTGGCGGTCAAATCTCACCGTGCGGCAAAAG
ATCTGCTACCTGAGCGGCATGCTCTACTACGCAGCCACGGCAATGGTCAA
ATACATCCCGCAGGTAATGGCCATGGGGACGTGCCCCCATGAGCCGCGGG
CCCTGTTCATGCAGCACTATCGATGGTGTATGGGGAGCACGACGCTGTTA
TGCAACGCGGAGTTCTGGCGGTCAAATCTCACCGTGCGGCAAAAGATCTG
CTACCTGAGCGGCATGCTCTACTACGCAGCCACGGCAATG
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