mRNA_H-elongata_contig135455.2506.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135455.2506.1
Unique NamemRNA_H-elongata_contig135455.2506.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig135455.2506.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 1.930e-47
Identity = 133/433 (30.72%), Postives = 217/433 (50.12%), Query Frame = 1
Query:    1 WANDSGATEHMTKDPAGLEDYTPTPAGDRVKSAGGTLLPVAGYGHLRLLVGQGNNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYPAAAFIRPRRGGKPLFFRPLRSENGLLEIKVRRHVAAKSRLPKPPTAAALAAT------QRGSRNIMKFHQVLGHPAEQITRNTARMAGVQLSGTWQTCVHCSKSRVRRYAVLKSTENRADRRAGRLFIDISGPFHETSLRGNRFVMLCIDDFTRFKIVCFVKHKSDATNALRDIINDYFAPEGLK--IGVIRTDDGGEWHG-QFLSFLSEIGIKRQSTPPYTPQYNGVVERALGLLRDKTVA------LLRGVIE-SKSDRLWAQAMAYTCDMWNRCTSSSLDSGTSPYELWYGRRPKFDNIPPVGTVGYLRRLKPGHKLAPRGASCIMLELASD 1251
            W  D+G   HMT   A ++D  P      V   GG    ++  G L L+    ++ F+     + LK+V + PNLG +NL S     +F             +     G+  F    ++ +G+L       +A+  RL +      LAA        + + ++ +FH +  H  + + R TA+  G +L G    C  CS ++  +  + + T++R+D++ GR+F+D+ G     S+ G  + M+  DDFTR   + F+KHKSDA  A R  +    A +G+   + ++R+D+GGE+ G +F S  +E+ IK++ TP Y+PQYNGV ER LGL+ +  +A      +L G ++  K+D+LWA+AM + C+  N    S+     SPYE+WYG  P+     P     Y R  +P  KL P+G SC  +  + D
Sbjct:  525 WYADTGTAFHMTDSLACMKDLKP--CHKSVNGIGGVSCEISFSGTLELVFVTADSEFS-----MELKNVLYSPNLG-YNLFSPS--AEFDGESWNGLGGPDGVMTAFKGQVTF----QNFDGML-------IASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRD 933          
BLAST of mRNA_H-elongata_contig135455.2506.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 2.680e-47
Identity = 133/433 (30.72%), Postives = 217/433 (50.12%), Query Frame = 1
Query:    1 WANDSGATEHMTKDPAGLEDYTPTPAGDRVKSAGGTLLPVAGYGHLRLLVGQGNNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYPAAAFIRPRRGGKPLFFRPLRSENGLLEIKVRRHVAAKSRLPKPPTAAALAAT------QRGSRNIMKFHQVLGHPAEQITRNTARMAGVQLSGTWQTCVHCSKSRVRRYAVLKSTENRADRRAGRLFIDISGPFHETSLRGNRFVMLCIDDFTRFKIVCFVKHKSDATNALRDIINDYFAPEGLK--IGVIRTDDGGEWHG-QFLSFLSEIGIKRQSTPPYTPQYNGVVERALGLLRDKTVA------LLRGVIE-SKSDRLWAQAMAYTCDMWNRCTSSSLDSGTSPYELWYGRRPKFDNIPPVGTVGYLRRLKPGHKLAPRGASCIMLELASD 1251
            W  D+G   HMT   A ++D  P      V   GG    ++  G L L+    ++ F+     + LK+V + PNLG +NL S     +F             +     G+  F    ++ +G+L       +A+  RL +      LAA        + + ++ +FH +  H  + + R TA+  G +L G    C  CS ++  +  + + T++R+D++ GR+F+D+ G     S+ G  + M+  DDFTR   + F+KHKSDA  A R  +    A +G+   + ++R+D+GGE+ G +F S  +E+ IK++ TP Y+PQYNGV ER LGL+ +  +A      +L G ++  K+D+LWA+AM + C+  N    S+     SPYE+WYG  P+     P     Y R  +P  KL P+G SC  +  + D
Sbjct:  232 WYADTGTAFHMTDSLACMKDLKP--CHKSVNGIGGVSCEISFSGTLELVFVTADSEFS-----VELKNVLYSPNLG-YNLFSPS--AEFDGESWNGLGGPDGVMTAFKGQVTF----QNFDGML-------IASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRD 640          
BLAST of mRNA_H-elongata_contig135455.2506.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.130e-45
Identity = 136/435 (31.26%), Postives = 215/435 (49.43%), Query Frame = 1
Query:    1 WANDSGATEHMTKDPAGLEDYTPTPAGDRVKSAGGTLLPVAGYGHLRLLVGQGNNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYPAAAF-IRPRRGGKPLFFRPLRSENGLLEIKVRRHVAAKSRLPKPPTAAALAAT------QRGSRNIMKFHQVLGHPAEQITRNTARMAGVQLSGTWQTCVHCSKSRVRRYAVLKSTENRADRRAGRLFIDISGPFHETSLRGNRFVMLCIDDFTRFKIVCFVKHKSDATNALRDIINDYFA---PEGLKIGVIRTDDGGEWHG-QFLSFLSEIGIKRQSTPPYTPQYNGVVERALGLLRDKTVA------LLRGVIE-SKSDRLWAQAMAYTCDMWNRCTSSSLDSGTSPYELWYGRRPKFDNIPPVGTVGYLRRLKPGHKLAPRGASCIMLELASD 1251
            W  D+G   HMT   + ++D  P      V   G     VA  G L L+    ++ F+     + LK+V +  NLG +N+ S    +  FD      P     +     G+  F    ++ +G+L       +A+  RL +      LAA          + +I +FH +  H  E + R TA+  G +L G    C  CS S+  R  +++ T+ R+D++ GR+F+D+ G     S+ G  + M+  DDFTR   + F+K++SDA  A R  +    A   P  ++I  +R+D+GGE+ G +F S  +E+ IK++ TP Y+PQYNGV ER LGL+ +  +A      +L G ++  K+D+LWA+AM + C+  N    S+     SPYE+WYG  P+     P     Y R  +P  KL P+G SC  +  + D
Sbjct:  113 WYADTGTAFHMTDSLSCMKDLKP--CHKSVNGIGSVSCEVAFSGTLELVFVTADSEFS-----VELKNVLYSQNLG-YNIFSP---SAEFDGESWNGPGGPDGVMTAFNGQVTF----QNFDGML-------IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRD 521          
BLAST of mRNA_H-elongata_contig135455.2506.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.450e-45
Identity = 137/423 (32.39%), Postives = 204/423 (48.23%), Query Frame = 1
Query:   10 DSGATEHMTKDPAGLEDYTPTPAGDRVKSAGGTLLPVAGYGHLRLLVGQGNNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYPAAAF-IRPRRGGKPLFFRPLRSENGLLEIKVRRHVAAKSRLPKPPTAAALAATQRGSRNIMKFHQVLGHPAEQITRNTARMAGVQLSGTWQTCVHCSKSRVRRYAVLKSTENRADRRAGRLFIDISGPFHETSLRGNRFVMLCIDDFTRFKIVCFVKHKSDATNALRDIINDYFAPEGLK-IGVIRTDDGGEW-HGQFLSFLSEIGIKRQSTPPYTPQYNGVVERALGLLRDKTVA-------LLRGVIESKSDRLWAQAMAYTCDMWNRCTSSSLDSGTSPYELWYGRRPKFDNIPPVGTVGYLR----RLKPGHKLAPRGASCIML 1236
            D+GAT HM  +  G   Y       RV+ A G   P+ GYG + + +   +      T  L LK VAHVP L  +NL+S   LT  FD            +   RGG  + + P R  N  ++   R H         P  A A +       +I  FH   GH  E + R TA+  G  L G  + C+ CS ++     +   T  RA ++  R+F+D+SG     SL G  + ++  DD+TR+  V F+KHKSDA  A    + +  A      + V+R+D+GGE+  G+F     +  IK++ TP ++P+YNGV ERALGL++D  +A       L  G     S  LWA+A+A++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    ++K  HK  P+   C  L
Sbjct:  372 DTGATTHMFANSDGFVRYEECDR--RVRVAAGETFPIVGYGDVTVTLSSRDG-----TTDLLLKRVAHVPRL-DYNLVS---LTSLFDDGFETKTLNKHELELERGGGEVVYFP-RCGNLYVQNGFRTHTEHACAAIAPGNAKAPSTPV----DINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYL 771          
BLAST of mRNA_H-elongata_contig135455.2506.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.460e-45
Identity = 137/423 (32.39%), Postives = 204/423 (48.23%), Query Frame = 1
Query:   10 DSGATEHMTKDPAGLEDYTPTPAGDRVKSAGGTLLPVAGYGHLRLLVGQGNNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYPAAAF-IRPRRGGKPLFFRPLRSENGLLEIKVRRHVAAKSRLPKPPTAAALAATQRGSRNIMKFHQVLGHPAEQITRNTARMAGVQLSGTWQTCVHCSKSRVRRYAVLKSTENRADRRAGRLFIDISGPFHETSLRGNRFVMLCIDDFTRFKIVCFVKHKSDATNALRDIINDYFAPEGLK-IGVIRTDDGGEW-HGQFLSFLSEIGIKRQSTPPYTPQYNGVVERALGLLRDKTVA-------LLRGVIESKSDRLWAQAMAYTCDMWNRCTSSSLDSGTSPYELWYGRRPKFDNIPPVGTVGYLR----RLKPGHKLAPRGASCIML 1236
            D+GAT HM  +  G   Y       RV+ A G   P+ GYG + + +   +      T  L LK VAHVP L  +NL+S   LT  FD            +   RGG  + + P R  N  ++   R H         P  A A +       +I  FH   GH  E + R TA+  G  L G  + C+ CS ++     +   T  RA ++  R+F+D+SG     SL G  + ++  DD+TR+  V F+KHKSDA  A    + +  A      + V+R+D+GGE+  G+F     +  IK++ TP ++P+YNGV ERALGL++D  +A       L  G     S  LWA+A+A++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    ++K  HK  P+   C  L
Sbjct:  385 DTGATTHMFANSDGFVRYEECDR--RVRVAAGETFPIVGYGDVTVTLSSRDG-----TTDLLLKRVAHVPRL-DYNLVS---LTSLFDDGFETKTLNKHELELERGGGEVVYFP-RCGNLYVQNGFRTHTEHACAAIAPGNAKAPSTPV----DINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYL 784          
BLAST of mRNA_H-elongata_contig135455.2506.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.480e-45
Identity = 137/423 (32.39%), Postives = 204/423 (48.23%), Query Frame = 1
Query:   10 DSGATEHMTKDPAGLEDYTPTPAGDRVKSAGGTLLPVAGYGHLRLLVGQGNNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYPAAAF-IRPRRGGKPLFFRPLRSENGLLEIKVRRHVAAKSRLPKPPTAAALAATQRGSRNIMKFHQVLGHPAEQITRNTARMAGVQLSGTWQTCVHCSKSRVRRYAVLKSTENRADRRAGRLFIDISGPFHETSLRGNRFVMLCIDDFTRFKIVCFVKHKSDATNALRDIINDYFAPEGLK-IGVIRTDDGGEW-HGQFLSFLSEIGIKRQSTPPYTPQYNGVVERALGLLRDKTVA-------LLRGVIESKSDRLWAQAMAYTCDMWNRCTSSSLDSGTSPYELWYGRRPKFDNIPPVGTVGYLR----RLKPGHKLAPRGASCIML 1236
            D+GAT HM  +  G   Y       RV+ A G   P+ GYG + + +   +      T  L LK VAHVP L  +NL+S   LT  FD            +   RGG  + + P R  N  ++   R H         P  A A +       +I  FH   GH  E + R TA+  G  L G  + C+ CS ++     +   T  RA ++  R+F+D+SG     SL G  + ++  DD+TR+  V F+KHKSDA  A    + +  A      + V+R+D+GGE+  G+F     +  IK++ TP ++P+YNGV ERALGL++D  +A       L  G     S  LWA+A+A++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    ++K  HK  P+   C  L
Sbjct:  528 DTGATTHMFANSDGFVRYEECDR--RVRVAAGETFPIVGYGDVTVTLSSRDG-----TTDLLLKRVAHVPRL-DYNLVS---LTSLFDDGFETKTLNKHELELERGGGEVVYFP-RCGNLYVQNGFRTHTEHACAAIAPGNAKAPSTPV----DINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYL 927          
BLAST of mRNA_H-elongata_contig135455.2506.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.150e-44
Identity = 96/272 (35.29%), Postives = 153/272 (56.25%), Query Frame = 1
Query:  466 NIMKFHQVLGHPAEQITRNTARMAGVQLSGTWQTCVHCSKSRVRRYAVLKSTENRADRRAGRLFIDISGPFHETSLRGNRFVMLCIDDFTRFKIVCFVKHKSDATNALRDIINDYFAPEGLK--IGVIRTDDGGEWHG-QFLSFLSEIGIKRQSTPPYTPQYNGVVERALGLLRDKTVA------LLRGVIE-SKSDRLWAQAMAYTCDMWNRCTSSSLDSGTSPYELWYGRRPKFDNIPPVGTVGYLRRLKPGHKLAPRGASCIMLELASD 1251
            +I +FH +  H  E + R TA+  G +L G    C  CS S+  R  +++ T+ R+D++ GR+F D+ G     S+ G  + ++  DDFTR   + F+++KSDA +A R  +    A  G+   + ++R+D+GG++ G  F S  +E+ IK++ TP Y+PQYNGV ER LGL+ +  +A      +L G ++  K+D+LWA+AM + C+  N    S+     SPYE+WYG  P+     P     Y R  +P  KL P+G SC  +  + D
Sbjct:   33 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVGPSRD 301          
BLAST of mRNA_H-elongata_contig135455.2506.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 2.610e-44
Identity = 130/433 (30.02%), Postives = 210/433 (48.50%), Query Frame = 1
Query:    1 WANDSGATEHMTKDPAGLEDYTPTPAGDRVKSAGGTLLPVAGYGHLRLLVGQGNNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYPAAAFIRPRRGGKPLFFRPLRSENGLLEIKVRRHVAAKSRLPKPPTAAALAAT------QRGSRNIMKFHQVLGHPAEQITRNTARMAGVQLSGTWQTCVHCSKSRVRRYAVLKSTENRADRRAGRLFIDISGPFHETSLRGNRFVMLCIDDFTRFKIVCFVKHKSDATNALRDIINDYFAPEGLK--IGVIRTDDGGEWHG-QFLSFLSEIGIKRQSTPPYTPQYNGVVERALGLLRDKTVA------LLRGVIE-SKSDRLWAQAMAYTCDMWNRCTSSSLDSGTSPYELWYGRRPKFDNIPPVGTVGYLRRLKPGHKLAPRGASCIMLELASD 1251
            W  D+G   HMT   + ++D  P      VK  GG    +   G L L+    ++ F      + L++V + PNLG +NL S     +F             +     G   F    ++ +G+L       ++   RL      + LAA            ++ +FH +  H  E + R TA+  G++L+G    C  CS S+  +  +   T+ R+D++ GR+F+D+ G     S+ G  + M+  DDFTR   + F+K KSDA +A R  +    A +G+   + ++R+D+GGE+ G +F S  +E+ IK++ TP Y+PQYNGV ER LGL+    +A      +L G ++  K+DRLWA+AM + C+  N    S+     SPYE+W+G        P +    Y R  +P  KL P+G +C  +  + D
Sbjct:  431 WYADTGTAFHMTDRLSCMKDLKP--CHKNVKGIGGVTCEIEFSGTLELVFVTADSQFP-----VELENVLYSPNLG-YNLFSPS--AEFDGESWNYLGGPDGVMTAFNGHVTF----QNLDGML-------ISPAYRLENNCVGSVLAALTPSNPKHESKMDVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPYPFLKPA-YCRWQRPS-KLLPKGEACFYVGPSRD 839          
BLAST of mRNA_H-elongata_contig135455.2506.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 4.810e-44
Identity = 128/409 (31.30%), Postives = 204/409 (49.88%), Query Frame = 1
Query:   73 PAGDRVKSAGGTLLPVAGYGHLRLLVGQGNNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYPAAAFIRPRRGGKPLFFRPLRSENGLLEIKVRRHVAAKSRLPKPPTAAALAAT------QRGSRNIMKFHQVLGHPAEQITRNTARMAGVQLSGTWQTCVHCSKSRVRRYAVLKSTENRADRRAGRLFIDISGPFHETSLRGNRFVMLCIDDFTRFKIVCFVKHKSDATNALRDIINDYFAPEGLK--IGVIRTDDGGEWHG-QFLSFLSEIGIKRQSTPPYTPQYNGVVERALGLLRDKTVA------LLRGVIE-SKSDRLWAQAMAYTCDMWNRCTSSSLDSGTSPYELWYGRRPKFDNIPPVGTVGYLRRLKPGHKLAPRGASCIMLELASD 1251
            P    V   GG    VA  G L L+    ++ F+     + LK+V + PNLG +NL S     +F             +     G+  F    ++ +G+L       +A+  RL +      LAA          + +I +FH +  H  E + R TA+  G +L G    C  CS S+  R  +++ T+ R+D++ GR+F+D+ G     S+ G  + M+  DDFTR   + F+++KSDA +A R  +    A  G+   + ++R+D+GGE+ G +F S  +E+ IK++ TP Y+PQYNGV ER LGL+ +  +A      +L G ++  K+D+LWA+AM + C+  N    S+      PYE+WYG  P+     P     Y R  +P  KL P+G SC  +  + D
Sbjct:   13 PCHKSVNGIGGVSCEVAFSGTLELVFVTADSEFS-----VELKNVLYSPNLG-YNLFSPS--AEFDGESWNGLGGPDGVMTAFNGQVTF----QNFDGML-------IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRD 399          
BLAST of mRNA_H-elongata_contig135455.2506.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 4.990e-44
Identity = 137/423 (32.39%), Postives = 199/423 (47.04%), Query Frame = 1
Query:   10 DSGATEHMTKDPAGLEDYTPTPAGDRVKSAGGTLLPVAGYGHLRLLVGQGNNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYPAAAF-IRPRRGGKPLFFRPLRSENGLLEIKVRRHVAAKSRLPKPPTAAALAATQRGSRNIMKFHQVLGHPAEQITRNTARMAGVQLSGTWQTCVHCSKSRVRRYAVLKSTENRADRRAGRLFIDISGPFHETSLRGNRFVMLCIDDFTRFKIVCFVKHKSDATNALRDIINDYFAPEGLK-IGVIRTDDGGEW-HGQFLSFLSEIGIKRQSTPPYTPQYNGVVERALGLLRDKTVA-------LLRGVIESKSDRLWAQAMAYTCDMWNRCTSSSLDSGTSPYELWYGRRPKFDNIPPVGTVGYLR----RLKPGHKLAPRGASCIML 1236
            D+GAT HM  +  G   Y       RV+ A G   P+ GYG + + +          T  L LK VAHVP L  +NL+S   LT  FD   +        +   RGG    + P R  N  +    R H         P  A A +A       I  FH   GH  E + R TA+  G  L G  + C+ CS ++     +   T  RA +R  R+F+D+SG     SL G  + ++  D +TR+  V F+KHKSDA  A    + +  A      + V+R+D+GGE+  G+F     +  IK++ TP ++P+YNGV ERALGL++D  +A       L  G     S   WA+A+A+ C+  N  +++S     SPYE+W+G  P     PP  T  +L+    ++K  HK  P+   C  L
Sbjct:  398 DTGATTHMFANSDGFVRYEECDR--RVRVAAGETFPIVGYGDVTVTLSSRGG-----TTDLLLKRVAHVPRL-DYNLVS---LTSLFDDGFQTKTLNKHELELERGGGESVYSP-RCGNLYVHNGCRTHTEHAYTAIAPGDAKASSAPVE----INDFHYAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPS--FWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYL 797          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135455.2506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBA7_9PHAE1.930e-4730.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE2.680e-4730.72Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE1.130e-4531.26Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JZQ8_9PHAE1.450e-4532.39Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.460e-4532.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.480e-4532.39Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5KVR5_9PHAE1.150e-4435.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE2.610e-4430.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y0_9PHAE4.810e-4431.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JXF7_9PHAE4.990e-4432.39Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135455contigH-elongata_contig135455:502..1752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score125.9
Seed ortholog evalue4.2e-26
Seed eggNOG ortholog5270.UM03188P0
EggNOG free text desc.Retrotransposon gag protein
EggNOG OGs38DPC@33154,3NUZ7@4751,3V2N5@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1251
Cds size1221
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.3730958-UTR-H-elongata_contig135455:501..5311622929804.3730958-UTR-H-elongata_contig135455:501..531Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135455 502..531 +
1691679163.9535997-UTR-H-elongata_contig135455:501..5311691679163.9535997-UTR-H-elongata_contig135455:501..531Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135455 502..531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.389457-CDS-H-elongata_contig135455:531..17521622929804.389457-CDS-H-elongata_contig135455:531..1752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135455 532..1752 +
1691679163.9644299-CDS-H-elongata_contig135455:531..17521691679163.9644299-CDS-H-elongata_contig135455:531..1752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135455 532..1752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135455.2506.1prot_H-elongata_contig135455.2506.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135455 532..1752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135455.2506.1

>prot_H-elongata_contig135455.2506.1 ID=prot_H-elongata_contig135455.2506.1|Name=mRNA_H-elongata_contig135455.2506.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=407bp
MTKDPAGLEDYTPTPAGDRVKSAGGTLLPVAGYGHLRLLVGQGNNNFANS
TRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYPAAAFIRPRRGGK
PLFFRPLRSENGLLEIKVRRHVAAKSRLPKPPTAAALAATQRGSRNIMKF
HQVLGHPAEQITRNTARMAGVQLSGTWQTCVHCSKSRVRRYAVLKSTENR
ADRRAGRLFIDISGPFHETSLRGNRFVMLCIDDFTRFKIVCFVKHKSDAT
NALRDIINDYFAPEGLKIGVIRTDDGGEWHGQFLSFLSEIGIKRQSTPPY
TPQYNGVVERALGLLRDKTVALLRGVIESKSDRLWAQAMAYTCDMWNRCT
SSSLDSGTSPYELWYGRRPKFDNIPPVGTVGYLRRLKPGHKLAPRGASCI
MLELASD
back to top

mRNA from alignment at H-elongata_contig135455:502..1752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135455.2506.1 ID=mRNA_H-elongata_contig135455.2506.1|Name=mRNA_H-elongata_contig135455.2506.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1251bp|location=Sequence derived from alignment at H-elongata_contig135455:502..1752+ (Himanthalia elongata Himel1 dioecious)
TGGGCGAACGATAGCGGTGCGACAGAGCATATGACAAAAGACCCGGCGGG TCTAGAGGATTACACGCCGACACCCGCGGGAGATCGAGTGAAGAGCGCAG GCGGTACCCTCCTTCCGGTGGCGGGATATGGACATCTCCGCCTCCTGGTG GGCCAAGGCAACAACAACTTCGCCAACTCGACGCGCCAGCTCACGCTAAA GCACGTCGCACATGTGCCGAATCTTGGGCAGCATAATCTGCTCTCTACAA AACGGCTGACGCAGTTTTTCGACGCGCCGATGCGCGTCTACCCAGCGGCT GCATTTATCCGCCCCCGGCGAGGGGGCAAACCACTCTTCTTCCGCCCACT TCGATCAGAAAACGGCCTTTTGGAGATCAAGGTGCGCCGCCACGTCGCTG CAAAGAGCCGCCTACCGAAACCCCCAACAGCAGCAGCACTCGCGGCGACG CAGCGTGGCTCGCGGAATATCATGAAGTTCCACCAGGTGCTGGGGCACCC GGCAGAACAGATCACGCGCAACACGGCCCGTATGGCGGGCGTGCAATTAA GCGGAACTTGGCAAACATGCGTGCACTGCTCCAAATCTAGGGTGCGGCGA TACGCCGTGCTTAAATCCACAGAGAATCGGGCTGACAGGCGCGCGGGACG CCTGTTTATTGATATCTCAGGCCCTTTTCACGAGACGTCTCTCAGAGGAA ACAGATTCGTCATGCTGTGCATTGACGACTTCACCCGCTTCAAAATAGTC TGTTTCGTAAAGCACAAGAGCGACGCCACGAATGCGCTAAGGGACATAAT CAACGACTACTTCGCGCCCGAGGGCCTCAAGATTGGCGTTATCCGCACGG ACGATGGGGGAGAATGGCACGGACAGTTCCTGTCTTTCCTGAGTGAGATC GGAATCAAGCGCCAGTCCACACCCCCATATACCCCCCAATACAATGGCGT CGTGGAGCGCGCTCTGGGGCTACTGCGCGACAAGACCGTGGCCCTGCTGC GAGGTGTAATAGAGAGTAAGAGCGACCGTCTATGGGCGCAAGCTATGGCG TACACATGCGATATGTGGAACCGATGCACCTCCTCCTCCCTGGACAGCGG CACCTCGCCATATGAGCTTTGGTACGGCCGACGTCCGAAATTCGACAACA TCCCTCCGGTCGGGACCGTGGGATATCTACGACGGTTGAAGCCGGGGCAC AAACTAGCCCCCCGTGGGGCGAGCTGCATCATGCTCGAGCTGGCCTCCGA C
back to top

Coding sequence (CDS) from alignment at H-elongata_contig135455:502..1752+

>mRNA_H-elongata_contig135455.2506.1 ID=mRNA_H-elongata_contig135455.2506.1|Name=mRNA_H-elongata_contig135455.2506.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2442bp|location=Sequence derived from alignment at H-elongata_contig135455:502..1752+ (Himanthalia elongata Himel1 dioecious)
ATGACAAAAGACCCGGCGGGTCTAGAGGATTACACGCCGACACCCGCGGG
AGATCGAGTGAAGAGCGCAGGCGGTACCCTCCTTCCGGTGGCGGGATATG
GACATCTCCGCCTCCTGGTGGGCCAAGGCAACAACAACTTCGCCAACTCG
ACGCGCCAGCTCACGCTAAAGCACGTCGCACATGTGCCGAATCTTGGGCA
GCATAATCTGCTCTCTACAAAACGGCTGACGCAGTTTTTCGACGCGCCGA
TGCGCGTCTACCCAGCGGCTGCATTTATCCGCCCCCGGCGAGGGGGCAAA
CCACTCTTCTTCCGCCCACTTCGATCAGAAAACGGCCTTTTGGAGATCAA
GGTGCGCCGCCACGTCGCTGCAAAGAGCCGCCTACCGAAACCCCCAACAG
CAGCAGCACTCGCGGCGACGCAGCGTGGCTCGCGGAATATCATGAAGTTC
CACCAGGTGCTGGGGCACCCGGCAGAACAGATCACGCGCAACACGGCCCG
TATGGCGGGCGTGCAATTAAGCGGAACTTGGCAAACATGCGTGCACTGCT
CCAAATCTAGGGTGCGGCGATACGCCGTGCTTAAATCCACAGAGAATCGG
GCTGACAGGCGCGCGGGACGCCTGTTTATTGATATCTCAGGCCCTTTTCA
CGAGACGTCTCTCAGAGGAAACAGATTCGTCATGCTGTGCATTGACGACT
TCACCCGCTTCAAAATAGTCTGTTTCGTAAAGCACAAGAGCGACGCCACG
AATGCGCTAAGGGACATAATCAACGACTACTTCGCGCCCGAGGGCCTCAA
GATTGGCGTTATCCGCACGGACGATGGGGGAGAATGGCACGGACAGTTCC
TGTCTTTCCTGAGTGAGATCGGAATCAAGCGCCAGTCCACACCCCCATAT
ACCCCCCAATACAATGGCGTCGTGGAGCGCGCTCTGGGGCTACTGCGCGA
CAAGACCGTGGCCCTGCTGCGAGGTGTAATAGAGAGTAAGAGCGACCGTC
TATGGGCGCAAGCTATGGCGTACACATGCGATATGTGGAACCGATGCACC
TCCTCCTCCCTGGACAGCGGCACCTCGCCATATGAGCTTTGGTACGGCCG
ACGTCCGAAATTCGACAACATCCCTCCGGTCGGGACCGTGGGATATCTAC
GACGGTTGAAGCCGGGGCACAAACTAGCCCCCCGTGGGGCGAGCTGCATC
ATGCTCGAGCTGGCCTCCGACATGACAAAAGACCCGGCGGGTCTAGAGGA
TTACACGCCGACACCCGCGGGAGATCGAGTGAAGAGCGCAGGCGGTACCC
TCCTTCCGGTGGCGGGATATGGACATCTCCGCCTCCTGGTGGGCCAAGGC
AACAACAACTTCGCCAACTCGACGCGCCAGCTCACGCTAAAGCACGTCGC
ACATGTGCCGAATCTTGGGCAGCATAATCTGCTCTCTACAAAACGGCTGA
CGCAGTTTTTCGACGCGCCGATGCGCGTCTACCCAGCGGCTGCATTTATC
CGCCCCCGGCGAGGGGGCAAACCACTCTTCTTCCGCCCACTTCGATCAGA
AAACGGCCTTTTGGAGATCAAGGTGCGCCGCCACGTCGCTGCAAAGAGCC
GCCTACCGAAACCCCCAACAGCAGCAGCACTCGCGGCGACGCAGCGTGGC
TCGCGGAATATCATGAAGTTCCACCAGGTGCTGGGGCACCCGGCAGAACA
GATCACGCGCAACACGGCCCGTATGGCGGGCGTGCAATTAAGCGGAACTT
GGCAAACATGCGTGCACTGCTCCAAATCTAGGGTGCGGCGATACGCCGTG
CTTAAATCCACAGAGAATCGGGCTGACAGGCGCGCGGGACGCCTGTTTAT
TGATATCTCAGGCCCTTTTCACGAGACGTCTCTCAGAGGAAACAGATTCG
TCATGCTGTGCATTGACGACTTCACCCGCTTCAAAATAGTCTGTTTCGTA
AAGCACAAGAGCGACGCCACGAATGCGCTAAGGGACATAATCAACGACTA
CTTCGCGCCCGAGGGCCTCAAGATTGGCGTTATCCGCACGGACGATGGGG
GAGAATGGCACGGACAGTTCCTGTCTTTCCTGAGTGAGATCGGAATCAAG
CGCCAGTCCACACCCCCATATACCCCCCAATACAATGGCGTCGTGGAGCG
CGCTCTGGGGCTACTGCGCGACAAGACCGTGGCCCTGCTGCGAGGTGTAA
TAGAGAGTAAGAGCGACCGTCTATGGGCGCAAGCTATGGCGTACACATGC
GATATGTGGAACCGATGCACCTCCTCCTCCCTGGACAGCGGCACCTCGCC
ATATGAGCTTTGGTACGGCCGACGTCCGAAATTCGACAACATCCCTCCGG
TCGGGACCGTGGGATATCTACGACGGTTGAAGCCGGGGCACAAACTAGCC
CCCCGTGGGGCGAGCTGCATCATGCTCGAGCTGGCCTCCGAC
back to top