mRNA_H-elongata_contig135311.2495.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135311.2495.1
Unique NamemRNA_H-elongata_contig135311.2495.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 1.670e-67
Identity = 137/424 (32.31%), Postives = 226/424 (53.30%), Query Frame = 1
Query:    1 SPTPAQANIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQTDAEFEEMRQI---PYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 1188
            +PT A +++R++ +M        R  D+  A+++++++ED+++ LPE        +  L K++YGL  A   W + +       GF    AD CVFR I  G VVV +VV+VDD+    E ER + Q  RDL +  P+K+LG+  +Y  C   RD +AGTLK  Q    +          GK +      +  +EF++  ++   P+RE++G+LMW AT  RPDI+ A   +A++  +P   HWR+    L Y+ RT DLGIT+ R    G  +  +++ADY +    RRSVSGG VM  GG +SWFSR QK    +++++EY +LA+++ E+ FL+Q                         +A+N  S+  ++H+ +++H +R+ +    + I +V S    AD LTK++     + H  ++
Sbjct:   13 APTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKL-SEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 434          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 6.640e-66
Identity = 134/414 (32.37%), Postives = 219/414 (52.90%), Query Frame = 1
Query:   28 RMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQ-TDAEFEEMR-QIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 1188
            +M+ ++   L  +    DV+ A++ +E+EED+Y+ LP+        +  L K++YGL  A   W   ++      GF+   AD CVFR I  G VV+++VV+VDD+    E ER ++    DL  S P+K+LGE  +Y  C   R++  G L   Q       A      GG+++  S   + +D + +E+  + P+RE+VG+LMW AT  RPDI+ A   +A++  +P   HW +A   L Y  RT   GI++ R   EG  L  + +AD+ +    RRSVSGG V   GGA+SWFSR QK    +++++EY AL ++V E+ FL+Q                         +A+N  S+  ++H+ +++H +R+ ++   + + +V S   +AD LTKS+     + H  F+
Sbjct:   46 KMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA-DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFV 458          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 9.160e-66
Identity = 137/424 (32.31%), Postives = 226/424 (53.30%), Query Frame = 1
Query:    1 SPTPAQANIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQTDAEFEEMRQI---PYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 1188
            +PT A +++R++ +M        R  D+  A+++++++ED+++ LPE        +  L K++YGL  A   W + +       GF    AD CVFR I  G VVV +VV+VDD+    E ER + Q  RDL +  P+K+LG+  +Y  C   RD +AGTLK  Q    +          GK +      +  +EF++  ++   P+RE++G+LMW AT  RPDI+ A   +A++  +P   HWR+    L Y+ RT DLGIT+ R    G  +  +++ADY +    RRSVSGG VM  GG +SWFSR QK    +++++EY +LA+++ E+ FL+Q                         +A+N  S+  ++H+ +++H +R+ +    + I +V S    AD LTK++     + H  ++
Sbjct:  187 APTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKL-SEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 608          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 223 bits (567), Expect = 3.040e-64
Identity = 141/417 (33.81%), Postives = 218/417 (52.28%), Query Frame = 1
Query:   22 NIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAA----------TIAAAAGGKALSKSDSPQTDAEFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQM------------------------AKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQ 1170
            +IR+ LS+  A G+   QLDVD A+L A+++ED+Y+E PE  +    +V  L KA+YGL  AG  W   +       GF+   +D C++     G     I +YVDD++V   T+   ++  + + + F IK+LG   + L   I+ DR    L  +Q   ++T                      LSK+D P+ D +  EM + PYR ++G L + A   RPDI+FA   L++F +NPGP HW +A + L+YL  TRD GI+YG +  E T +  + +AD+GT  D RRSVSG  +MM GG + + ++ Q   A +SS++EY AL+    E+ +++ M                        A N     RT+H+ I++H VRD +   V+++ YV +    ADILTKS+  K  +
Sbjct:   86 SIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGRAGGDTTY-ICLYVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPV-VFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSLGTKRFE 500          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 6.120e-64
Identity = 146/426 (34.27%), Postives = 228/426 (53.52%), Query Frame = 1
Query:    1 SPTPAQANIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDS-PQTDA----EFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 1188
            SP P+ A+I+++L++    G      DV  AY  A ++E+++++LP    D   ++   ++A+YGL  +G  W     D     GF+  +ADPCVFR+++  VVV++IV+YVDD+LVA   E D E+ +  L   FP K+LGE  ++  C I RD  AGTL+  Q   I +   +      K+ S+  + P  D     E EE  + P RE +G++MW +T  RPD+SFA   +A+    P   HW + QK L YL  TRDLGITY R  G G  L+ +++A Y    D RRSVSG A  + G  +S  S+ Q + + +S+++EY A  E V E  F++                          + +N  SS RT+H+ ++ H +R     G + +++V + E  AD+LTK++   ++Q H + L
Sbjct:  823 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDS---MVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1241          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 7.530e-64
Identity = 146/426 (34.27%), Postives = 228/426 (53.52%), Query Frame = 1
Query:    1 SPTPAQANIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDS-PQTDA----EFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 1188
            SP P+ A+I+++L++    G      DV  AY  A ++E+++++LP    D   ++   ++A+YGL  +G  W     D     GF+  +ADPCVFR+++  VVV++IV+YVDD+LVA   E D E+ +  L   FP K+LGE  ++  C I RD  AGTL+  Q   I +   +      K+ S+  + P  D     E EE  + P RE +G++MW +T  RPD+SFA   +A+    P   HW + QK L YL  TRDLGITY R  G G  L+ +++A Y    D RRSVSG A  + G  +S  S+ Q + + +S+++EY A  E V E  F++                          + +N  SS RT+H+ ++ H +R     G + +++V + E  AD+LTK++   ++Q H + L
Sbjct: 1202 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDS---MVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1620          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 7.700e-64
Identity = 146/426 (34.27%), Postives = 228/426 (53.52%), Query Frame = 1
Query:    1 SPTPAQANIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDS-PQTDA----EFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 1188
            SP P+ A+I+++L++    G      DV  AY  A ++E+++++LP    D   ++   ++A+YGL  +G  W     D     GF+  +ADPCVFR+++  VVV++IV+YVDD+LVA   E D E+ +  L   FP K+LGE  ++  C I RD  AGTL+  Q   I +   +      K+ S+  + P  D     E EE  + P RE +G++MW +T  RPD+SFA   +A+    P   HW + QK L YL  TRDLGITY R  G G  L+ +++A Y    D RRSVSG A  + G  +S  S+ Q + + +S+++EY A  E V E  F++                          + +N  SS RT+H+ ++ H +R     G + +++V + E  AD+LTK++   ++Q H + L
Sbjct: 1365 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDS---MVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1783          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 1.030e-62
Identity = 136/424 (32.08%), Postives = 226/424 (53.30%), Query Frame = 1
Query:    1 SPTPAQANIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQTDAEFEEMRQI---PYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 1188
            +PT A +++R++ +M        R  D+  A+++++++ED+++ LPE        +  L K++YGL  A   W + +       GF    AD CVFR I  G VVV +VV+VDD+    E ER + Q  RDL +  P+K+LG+  +Y  C   RD +AGTLK  Q    +          GK +      +  +EF++  ++   P+RE++G+LMW AT  RPDI+ A   +A++  +P   HWR+    L Y+ RT DLGIT+ R    G  +  +++ADY +    RRSVSGG VM  GG +SWFSR QK    +++++EY +LA+++ E+ FL+Q                         +A+N  S+  ++H+ +++H +R+ +    + I +V S    A+ LTK++     + H  ++
Sbjct:  708 APTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKL-SEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFHRNYV 1129          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 1.630e-62
Identity = 143/414 (34.54%), Postives = 222/414 (53.62%), Query Frame = 1
Query:    1 SPTPAQANIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDS-PQTDA----EFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSV 1152
            SP P+ A+I+++L++    G      DV  AY  A ++E+++++LP    D   ++   ++A+YGL  +G  W     D     GF+  +ADPCVFR+++  VVV++IV+YVDD+LVA   E D E+ +  L   FP K+LGE  ++  C I RD  AGTL+  Q   I +   +      K+ S+  + P  D     E EE  + P RE +G++MW +T  RPD+SFA   +A+    P   HW + QK L YL  TRDLGITY R  G G  L+ +++A Y    D RRSVSG A  + G  +S  S+ Q + + +S+++EY A  E V E  F++                          + +N  SS RT+H+ ++ H +R     G + +++V + E  AD+LTK++
Sbjct: 1222 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDS---MVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA)

HSP 1 Score: 216 bits (549), Expect = 2.190e-62
Identity = 133/418 (31.82%), Postives = 226/418 (54.07%), Query Frame = 1
Query:   22 NIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTA----------ATIAAAAGGKALSKSDSPQTDAEFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWF-SRIQKVTAAASSKSEYGALAEMVNELCFLQQ------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQ 1170
            +IR+VLS++ A+ +   QLD D A+  ++++E +++E+P    ++   +  L KA+YGL  A   W   +       GF+   AD CV+ ++     V V + YVDD+++A++T  +  +    L S+F +K+LGEA + L   I  DR  GTL   Q + +             A +     G  LSK+ SP TDAE E+MR  PY+ ++G+L++  T  RPD+++   QL++F +NPG  HW++A + L+YL  T+D GI Y    G+   L  + +AD+G+  D RRSVSG  +MM GGA   F S+ Q+  A +S+++EY AL+    E+ + +                         +A N   + RT+ V I++H + + +   ++ ++YV + +  AD+LTK++  K ++
Sbjct:    3 SIRVVLSVVVAMAYVTEQLDADTAFPNSDLKEQVFMEVPYGITNAANMMCKLDKAIYGLKQAASAWHQTIHAVFVKIGFRSCGADKCVYVKVSKDNYVYVCL-YVDDMIIAAKTSEEINEVKMALKSAFKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMKLSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSGNNGKAV-LEVYTDADWGSNLDGRRSVSG-IMMMIGGAPGVFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRATLKDLGHEQVGATQVWEDNQGAIALASNAGYNARTKRVDIRHHYIGENVARDIITVDYVGTEDQLADLLTKALGTKRLK 417          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE1.670e-6732.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE6.640e-6632.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE9.160e-6632.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8K1CTN1_PYTOL3.040e-6433.81Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A6H5KSG8_9PHAE6.120e-6434.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE7.530e-6434.27Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE7.700e-6434.27Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5K2R1_9PHAE1.030e-6232.08Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JN00_9PHAE1.630e-6234.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3J8V8_9STRA2.190e-6231.82Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135311contigH-elongata_contig135311:13..1299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.4
Seed ortholog evalue5.9e-54
Seed eggNOG ortholog67593.Physo139221
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1188
Cds size1158
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135311.2495.1prot_H-elongata_contig135311.2495.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135311 43..1299 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.3493483-UTR-H-elongata_contig135311:12..421622929803.3493483-UTR-H-elongata_contig135311:12..42Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135311 13..42 +
1691679163.458809-UTR-H-elongata_contig135311:12..421691679163.458809-UTR-H-elongata_contig135311:12..42Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135311 13..42 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.3593206-CDS-H-elongata_contig135311:42..5301622929803.3593206-CDS-H-elongata_contig135311:42..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135311 43..530 +
1691679163.4696007-CDS-H-elongata_contig135311:42..5301691679163.4696007-CDS-H-elongata_contig135311:42..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135311 43..530 +
1622929803.3717604-CDS-H-elongata_contig135311:557..10441622929803.3717604-CDS-H-elongata_contig135311:557..1044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135311 558..1044 +
1691679163.480405-CDS-H-elongata_contig135311:557..10441691679163.480405-CDS-H-elongata_contig135311:557..1044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135311 558..1044 +
1622929803.3832784-CDS-H-elongata_contig135311:1116..12991622929803.3832784-CDS-H-elongata_contig135311:1116..1299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135311 1117..1299 +
1691679163.4942617-CDS-H-elongata_contig135311:1116..12991691679163.4942617-CDS-H-elongata_contig135311:1116..1299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135311 1117..1299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135311.2495.1

>prot_H-elongata_contig135311.2495.1 ID=prot_H-elongata_contig135311.2495.1|Name=mRNA_H-elongata_contig135311.2495.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=386bp
MVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLK
KAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVV
YVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGT
LKFDQHQCIQTAATIAAAAGGKALSKSDSPQTDAEFEEMRQIPYREIVGT
LMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGIT
YGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKV
TAAASSKSEYGALAEMVNELCFLQQMAKNRFSSRRTRHVGIKNHIVRDAI
DGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL
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mRNA from alignment at H-elongata_contig135311:13..1299+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135311.2495.1 ID=mRNA_H-elongata_contig135311.2495.1|Name=mRNA_H-elongata_contig135311.2495.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1287bp|location=Sequence derived from alignment at H-elongata_contig135311:13..1299+ (Himanthalia elongata Himel1 dioecious)
TCTCCGACTCCTGCGCAGGCCAACATTCGGATGGTACTCAGCATGATCGC GGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGG AGGCCGAAGTGGAGGAGGATATCTACGTTGAGCTCCCGGAGGCATATCGT GACTCCAGGAAGCAAGTCGGCCTACTAAAGAAGGCAATGTACGGACTCGT CCACGCCGGGCTGCTGTGGTCAAACAAAGTTCGGGATCGAGCTCGAGGCG AAGGGTTCCAGATATCTCAAGCCGACCCATGCGTGTTCCGGAGGATTCTC CACGGAGTAGTGGTAGTCGTCATCGTGGTCTACGTCGACGACCTGCTGGT TGCTAGTGAGACGGAACGTGACGAGGAGCAAGCGGTGAGGGACCTGTACT CCTCTTTCCCCATCAAGGATCTGGGGGAGGCTTCATATTACCTGGAATGC CACATCATGCGGGACCGGAACGCCGGGACACTGAAGTTCGACCAGCATCA GTGCATACAGACTGCGGCGTAACGTTTTGGCGTGACGAAGACCAGCACCA TCGCGGCTGCAGCAGGAGGAAAAGCCCTTTCGAAATCAGACAGCCCGCAA ACGGACGCAGAGTTTGAAGAAATGCGCCAGATTCCCTACCGAGAGATCGT TGGGACCCTAATGTGGGCAGCGACGATGATCAGGCCCGACATTTCATTCG CTGCGTACCAACTGGCGAAATTCAACGACAACCCGGGACCGACACACTGG AGGTCAGCCCAGAAAGCGCTGCAATATTTATGGCGCACTCGGGACCTCGG GATCACCTACGGAAGGGAACCGGGGGAGGGGACCAAGTTATCAGCGTGGA TCAACGCAGACTACGGCACCTGCCCGGACACGCGTCGCTCAGTGTCTGGA GGGGCGGTGATGATGGCTGGCGGGGCCATGAGTTGGTTCTCACGGATCCA AAAGGTAACGGCGGCGGCGTCGTCCAAATCGGAATACGGCGCGCTGGCTG AGATGGTAAACGAGTTGTGTTTCCTACAACAGGTCAAGAAGTTCATGACC CCTCCAATCGACGTCGCCATCAAGATACACGAAAACAACGAAGGCGCAAT CAAGATGGCGAAAAACCGCTTCAGCAGTCGACGAACGAGGCACGTGGGCA TCAAGAATCACATTGTCCGCGACGCGATCGATGGGGGGGTGGTTCAGATA GAATACGTTCGGTCCGGGGAACATCAGGCCGACATCCTCACGAAGTCCGT AGACGTCAAGACAATTCAGAAGCACGCGAAATTCCTT
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Coding sequence (CDS) from alignment at H-elongata_contig135311:13..1299+

>mRNA_H-elongata_contig135311.2495.1 ID=mRNA_H-elongata_contig135311.2495.1|Name=mRNA_H-elongata_contig135311.2495.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2316bp|location=Sequence derived from alignment at H-elongata_contig135311:13..1299+ (Himanthalia elongata Himel1 dioecious)
ATGGTACTCAGCATGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGA
CGTCGACATGGCCTACCTGGAGGCCGAAGTGGAGGAGGATATCTACGTTG
AGCTCCCGGAGGCATATCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAG
AAGGCAATGTACGGACTCGTCCACGCCGGGCTGCTGTGGTCAAACAAAGT
TCGGGATCGAGCTCGAGGCGAAGGGTTCCAGATATCTCAAGCCGACCCAT
GCGTGTTCCGGAGGATTCTCCACGGAGTAGTGGTAGTCGTCATCGTGGTC
TACGTCGACGACCTGCTGGTTGCTAGTGAGACGGAACGTGACGAGGAGCA
AGCGGTGAGGGACCTGTACTCCTCTTTCCCCATCAAGGATCTGGGGGAGG
CTTCATATTACCTGGAATGCCACATCATGCGGGACCGGAACGCCGGGACA
CTGAAGTTCGACCAGCATCAGTGCATACAGACTGCGGCATGGTACTCAGC
ATGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGGC
CTACCTGGAGGCCGAAGTGGAGGAGGATATCTACGTTGAGCTCCCGGAGG
CATATCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAGGCAATGTAC
GGACTCGTCCACGCCGGGCTGCTGTGGTCAAACAAAGTTCGGGATCGAGC
TCGAGGCGAAGGGTTCCAGATATCTCAAGCCGACCCATGCGTGTTCCGGA
GGATTCTCCACGGAGTAGTGGTAGTCGTCATCGTGGTCTACGTCGACGAC
CTGCTGGTTGCTAGTGAGACGGAACGTGACGAGGAGCAAGCGGTGAGGGA
CCTGTACTCCTCTTTCCCCATCAAGGATCTGGGGGAGGCTTCATATTACC
TGGAATGCCACATCATGCGGGACCGGAACGCCGGGACACTGAAGTTCGAC
CAGCATCAGTGCATACAGACTGCGGCCACCATCGCGGCTGCAGCAGGAGG
AAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGGACGCAGAGTTTGAAG
AAATGCGCCAGATTCCCTACCGAGAGATCGTTGGGACCCTAATGTGGGCA
GCGACGATGATCAGGCCCGACATTTCATTCGCTGCGTACCAACTGGCGAA
ATTCAACGACAACCCGGGACCGACACACTGGAGGTCAGCCCAGAAAGCGC
TGCAATATTTATGGCGCACTCGGGACCTCGGGATCACCTACGGAAGGGAA
CCGGGGGAGGGGACCAAGTTATCAGCGTGGATCAACGCAGACTACGGCAC
CTGCCCGGACACGCGTCGCTCAGTGTCTGGAGGGGCGGTGATGATGGCTG
GCGGGGCCATGAGTTGGTTCTCACGGATCCAAAAGGTAACGGCGGCGGCG
TCGTCCAAATCGGAATACGGCGCGCTGGCTGAGATGGTAAACGAGTTGTG
TTTCCTACAACAGCACCATCGCGGCTGCAGCAGGAGGAAAAGCCCTTTCG
AAATCAGACAGCCCGCAAACGGACGCAGAGTTTGAAGAAATGCGCCAGAT
TCCCTACCGAGAGATCGTTGGGACCCTAATGTGGGCAGCGACGATGATCA
GGCCCGACATTTCATTCGCTGCGTACCAACTGGCGAAATTCAACGACAAC
CCGGGACCGACACACTGGAGGTCAGCCCAGAAAGCGCTGCAATATTTATG
GCGCACTCGGGACCTCGGGATCACCTACGGAAGGGAACCGGGGGAGGGGA
CCAAGTTATCAGCGTGGATCAACGCAGACTACGGCACCTGCCCGGACACG
CGTCGCTCAGTGTCTGGAGGGGCGGTGATGATGGCTGGCGGGGCCATGAG
TTGGTTCTCACGGATCCAAAAGGTAACGGCGGCGGCGTCGTCCAAATCGG
AATACGGCGCGCTGGCTGAGATGGTAAACGAGTTGTGTTTCCTACAACAG
ATGGCGAAAAACCGCTTCAGCAGTCGACGAACGAGGCACGTGGGCATCAA
GAATCACATTGTCCGCGACGCGATCGATGGGGGGGTGGTTCAGATAGAAT
ACGTTCGGTCCGGGGAACATCAGGCCGACATCCTCACGAAGTCCGTAGAC
GTCAAGACAATTCAGAAGCACGCGAAATTCCTTATGGCGAAAAACCGCTT
CAGCAGTCGACGAACGAGGCACGTGGGCATCAAGAATCACATTGTCCGCG
ACGCGATCGATGGGGGGGTGGTTCAGATAGAATACGTTCGGTCCGGGGAA
CATCAGGCCGACATCCTCACGAAGTCCGTAGACGTCAAGACAATTCAGAA
GCACGCGAAATTCCTT
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