mRNA_H-elongata_contig135295.2493.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135295.2493.1
Unique NamemRNA_H-elongata_contig135295.2493.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig135295.2493.1 vs. uniprot
Match: D7FVZ3_ECTSI (Hydrolase_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ3_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 8.180e-54
Identity = 89/119 (74.79%), Postives = 102/119 (85.71%), Query Frame = 1
Query:    1 MVWRRRYGKSEGNPTEEGLLLDVEASLRALKENPKSGVDPKKLVLFGRSLGGAVALGATDRYPELIRAVIVENTFLSVSHMVDKLLPWLSRLKWLVLWLKWNSVETVGRLKRPVLFISG 357
            MV  R YGKSEG PTEEGL+LDVEASLRAL+E+PKSGV P KL+LFGRSLGGAVAL   DRYP+L+RAVIVENTF+SVSHMVDKL+P LS +KWLVL L+W++ E   RL RPVL+ISG
Sbjct:  112 MVDYRGYGKSEGTPTEEGLVLDVEASLRALRESPKSGVHPDKLILFGRSLGGAVALAGADRYPDLVRAVIVENTFISVSHMVDKLMPMLSGIKWLVLRLRWDNEEKARRLTRPVLYISG 230          
BLAST of mRNA_H-elongata_contig135295.2493.1 vs. uniprot
Match: A0A7S0V4U2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V4U2_9CRYP)

HSP 1 Score: 119 bits (297), Expect = 1.550e-31
Identity = 57/119 (47.90%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    1 MVWRRRYGKSEGNPTEEGLLLDVEASLRALKENPKSGVDPKKLVLFGRSLGGAVALGATDRYPELIRAVIVENTFLSVSHMVDKLLPWLSRLKWLVLWLKWNSVETVGRLKRPVLFISG 357
            MV  R YG+SEG P E GL LD +A +R +   P+  VD K++++ GRSLGGAV     ++YPEL++ +++ENTF S+  MVD +LPW++ LK LVL + W+S+  + R+  P+LFISG
Sbjct:    9 MVSYRGYGRSEGEPHEAGLKLDADAVVRHVAGMPE--VDAKRILILGRSLGGAVTCYVAEKYPELVKGIVLENTFTSIPDMVDVVLPWVAPLKSLVLRISWSSITLIPRITCPILFISG 125          
BLAST of mRNA_H-elongata_contig135295.2493.1 vs. uniprot
Match: L1JMN9_GUITC (Hydrolase_4 domain-containing protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1JMN9_GUITC)

HSP 1 Score: 118 bits (295), Expect = 7.700e-30
Identity = 58/119 (48.74%), Postives = 84/119 (70.59%), Query Frame = 1
Query:    1 MVWRRRYGKSEGNPTEEGLLLDVEASLRALKENPKSGVDPKKLVLFGRSLGGAVALGATDRYPELIRAVIVENTFLSVSHMVDKLLPWLSRLKWLVLWLKWNSVETVGRLKRPVLFISG 357
            MV  R YG+S+G PTEEGL +D +A L+ +    +  VDPKK+V+ GRSLGGAV +  T  YPE ++ +IVEN+F S++ MVD L+P+L+  K L+L + W S+E++  +  P+LFISG
Sbjct:  146 MVSYRGYGRSQGVPTEEGLKMDADAVLKYVSTLKQ--VDPKKIVILGRSLGGAVGIHITSMYPEKVKGLIVENSFTSIADMVDVLMPFLAIFKGLILRIGWKSIESIKDITTPILFISG 262          
BLAST of mRNA_H-elongata_contig135295.2493.1 vs. uniprot
Match: A0A7S0MKU2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MKU2_9CRYP)

HSP 1 Score: 113 bits (282), Expect = 1.290e-29
Identity = 53/119 (44.54%), Postives = 84/119 (70.59%), Query Frame = 1
Query:    1 MVWRRRYGKSEGNPTEEGLLLDVEASLRALKENPKSGVDPKKLVLFGRSLGGAVALGATDRYPELIRAVIVENTFLSVSHMVDKLLPWLSRLKWLVLWLKWNSVETVGRLKRPVLFISG 357
            MV  R YG+SEG P E+G+ +D +A++  L  + +  +D K++++ GRSLGGAV +    R+PE ++ +I+ENTF S++ MVD +LPW++ LK LVL + W S++ +G ++  VLFISG
Sbjct:   18 MVSYRGYGRSEGEPDEKGIKMDADAAISHL--SARKDIDAKRIIVLGRSLGGAVGVYVASRFPEKVQGLILENTFTSIADMVDVVLPWVAPLKSLVLRIGWRSIDDMGGVRCAVLFISG 134          
BLAST of mRNA_H-elongata_contig135295.2493.1 vs. uniprot
Match: G5A425_PHYSP (AB hydrolase-1 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=G5A425_PHYSP)

HSP 1 Score: 117 bits (294), Expect = 1.560e-29
Identity = 58/119 (48.74%), Postives = 88/119 (73.95%), Query Frame = 1
Query:    1 MVWRRRYGKSEGNPTEEGLLLDVEASLRALKENPKSGVDPKKLVLFGRSLGGAVALGATDRYPELIRAVIVENTFLSVSHMVDKLLPWLSRLKWLVLWLKWNSVETVGRLKRPVLFISG 357
            +V  R +G SEG PTE+GL LD EA+L A+    ++ +D  KLV+FGRSLGGAV++   ++ P  + AV++ENTFLS+S +VD L+P+L+ +K LVL + WNS + + ++K+P+LFI+G
Sbjct:  125 LVDYRGFGHSEGEPTEQGLKLDAEAALDAIYA--RTDIDTSKLVVFGRSLGGAVSVHLAEKEPSKVAAVVLENTFLSISAIVDVLMPFLTYVKPLVLRMDWNSAKGIQKIKQPILFIAG 241          
BLAST of mRNA_H-elongata_contig135295.2493.1 vs. uniprot
Match: H3H829_PHYRM (AB hydrolase-1 domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H829_PHYRM)

HSP 1 Score: 116 bits (291), Expect = 4.370e-29
Identity = 59/119 (49.58%), Postives = 87/119 (73.11%), Query Frame = 1
Query:    1 MVWRRRYGKSEGNPTEEGLLLDVEASLRALKENPKSGVDPKKLVLFGRSLGGAVALGATDRYPELIRAVIVENTFLSVSHMVDKLLPWLSRLKWLVLWLKWNSVETVGRLKRPVLFISG 357
            +V  R +G SEG P+EEGL LD +A+L A+    ++ +D  KLV+FGRSLGGAV++   ++ P  + AV++ENTFLS+S MVD L+P+L+ +K LVL + WNS   + +LK+P+LFI+G
Sbjct:  125 LVDYRGFGHSEGEPSEEGLKLDADAALDAMYA--RTDIDTSKLVVFGRSLGGAVSVYLAEKEPTRVAAVVLENTFLSISAMVDALMPFLTYVKPLVLRMDWNSELAIQKLKQPILFIAG 241          
BLAST of mRNA_H-elongata_contig135295.2493.1 vs. uniprot
Match: A0A0G4J6U7_PLABS (Hydrolase_4 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J6U7_PLABS)

HSP 1 Score: 116 bits (290), Expect = 4.450e-29
Identity = 59/115 (51.30%), Postives = 78/115 (67.83%), Query Frame = 1
Query:   13 RRYGKSEGNPTEEGLLLDVEASLRALKENPKSGVDPKKLVLFGRSLGGAVALGATDRYPELIRAVIVENTFLSVSHMVDKLLPWLSRLKWLVLWLKWNSVETVGRLKRPVLFISG 357
            R YG SEG P+E+GL+LD EA L  L    +  +DP++LV+FGRSLGGAVAL    RY   +RA I+ENTF S+  MVD +LP L+ LK L+L + W S   +G +  P+LF+SG
Sbjct:  147 RGYGDSEGTPSEQGLMLDAEAVLEHLLRE-RQDIDPRRLVVFGRSLGGAVALFIAKRYNAEVRATIIENTFTSIPDMVDVVLPLLAPLKRLILRIDWPSRSRIGHVTHPILFLSG 260          
BLAST of mRNA_H-elongata_contig135295.2493.1 vs. uniprot
Match: W2QQ06_PHYPN (AB hydrolase-1 domain-containing protein n=34 Tax=Phytophthora TaxID=4783 RepID=W2QQ06_PHYPN)

HSP 1 Score: 117 bits (292), Expect = 4.630e-29
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 MVWRRRYGKSEGNPTEEGLLLDVEASLRALKENPKSGVDPKKLVLFGRSLGGAVALGATDRYPELIRAVIVENTFLSVSHMVDKLLPWLSRLKWLVLWLKWNSVETVGRLKRPVLFISG 357
            +V  R +G SEG P+EEG+ LD EA L A+  + ++ +D  KLV FGRSLGGAV++   ++ P  + AV++ENTFLS+S MVD L+P+LS +K LVL + WN+   + ++K+P+LFI+G
Sbjct:  149 LVDYRGFGHSEGTPSEEGIKLDAEAVLDAM--HARTDIDSSKLVAFGRSLGGAVSVYLAEKEPSRVAAVVLENTFLSISAMVDALMPFLSYVKPLVLRMDWNNERAIQKIKQPILFIAG 265          
BLAST of mRNA_H-elongata_contig135295.2493.1 vs. uniprot
Match: A0A024UNQ4_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNQ4_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.100e-28
Identity = 60/119 (50.42%), Postives = 78/119 (65.55%), Query Frame = 1
Query:    1 MVWRRRYGKSEGNPTEEGLLLDVEASLRALKENPKSGVDPKKLVLFGRSLGGAVALGATDRYPELIRAVIVENTFLSVSHMVDKLLPWLSRLKWLVLWLKWNSVETVGRLKRPVLFISG 357
            +V  R +G SEG PTE GL LD E  L  L     S VD  KL+LFGRSLGGAVA+ A    P+ I  +I+ENTFLS+S MVD+++PWLS +K +VL L W +   +  L  P+LF++G
Sbjct:  126 LVDYRGFGMSEGEPTERGLQLDAEGVLDYLHSRGASTVDSSKLILFGRSLGGAVAVYAATTRPKQIAGLILENTFLSISAMVDQVMPWLSHVKSVVLRLDWGNEGRIPLLTHPILFVAG 244          
BLAST of mRNA_H-elongata_contig135295.2493.1 vs. uniprot
Match: UPI0006448873 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006448873)

HSP 1 Score: 113 bits (283), Expect = 2.360e-28
Identity = 55/115 (47.83%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   13 RRYGKSEGNPTEEGLLLDVEASLRALKENPKSGVDPKKLVLFGRSLGGAVALGATDRYPELIRAVIVENTFLSVSHMVDKLLPWLSRLKWLVLWLKWNSVETVGRLKRPVLFISG 357
            R YGKSEG+P+EEG+ LDV  ++  L  +    +D   + +FGRSLGGAVA+ A  R+P+ I+A I+ENTF+S+ HMVD ++PWL   K LV   +WN+ + + +L  P LF+SG
Sbjct:  118 RGYGKSEGSPSEEGIKLDVNVAMEYLLSDQT--IDSSMIFIFGRSLGGAVAIDAASRFPQDIKATILENTFMSIPHMVDVVMPWLKVFKPLVR-SQWNNYQAIAKLTAPTLFLSG 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135295.2493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVZ3_ECTSI8.180e-5474.79Hydrolase_4 domain-containing protein n=2 Tax=Ecto... [more]
A0A7S0V4U2_9CRYP1.550e-3147.90Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
L1JMN9_GUITC7.700e-3048.74Hydrolase_4 domain-containing protein n=2 Tax=Gemi... [more]
A0A7S0MKU2_9CRYP1.290e-2944.54Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
G5A425_PHYSP1.560e-2948.74AB hydrolase-1 domain-containing protein n=5 Tax=P... [more]
H3H829_PHYRM4.370e-2949.58AB hydrolase-1 domain-containing protein n=2 Tax=P... [more]
A0A0G4J6U7_PLABS4.450e-2951.30Hydrolase_4 domain-containing protein n=1 Tax=Plas... [more]
W2QQ06_PHYPN4.630e-2948.74AB hydrolase-1 domain-containing protein n=34 Tax=... [more]
A0A024UNQ4_9STRA1.100e-2850.42Hydrolase_4 domain-containing protein n=1 Tax=Apha... [more]
UPI00064488732.360e-2847.83hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135295contigH-elongata_contig135295:703..1595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.6
Seed ortholog evalue4.2e-43
Seed eggNOG ortholog2880.D7FVZ3
Preferred namebem46
KEGG koko:K06889
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005783,GO:0005886,GO:0007275,GO:0008150,GO:0012505,GO:0016020,GO:0016787,GO:0016788,GO:0019866,GO:0022622,GO:0031090,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0048364,GO:0048731,GO:0048856,GO:0071944,GO:0099402
EggNOG free text desc.protein depalmitoylation
EggNOG OGsCOG1073@1,KOG4391@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-01_002710.1
Exons2
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.2049634-CDS-H-elongata_contig135295:702..8971622929803.2049634-CDS-H-elongata_contig135295:702..897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135295 703..897 +
1691679163.3765202-CDS-H-elongata_contig135295:702..8971691679163.3765202-CDS-H-elongata_contig135295:702..897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135295 703..897 +
1622929803.2213328-CDS-H-elongata_contig135295:1433..15951622929803.2213328-CDS-H-elongata_contig135295:1433..1595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135295 1434..1595 +
1691679163.3922238-CDS-H-elongata_contig135295:1433..15951691679163.3922238-CDS-H-elongata_contig135295:1433..1595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135295 1434..1595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135295.2493.1prot_H-elongata_contig135295.2493.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135295 703..1595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135295.2493.1

>prot_H-elongata_contig135295.2493.1 ID=prot_H-elongata_contig135295.2493.1|Name=mRNA_H-elongata_contig135295.2493.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MVWRRRYGKSEGNPTEEGLLLDVEASLRALKENPKSGVDPKKLVLFGRSL
GGAVALGATDRYPELIRAVIVENTFLSVSHMVDKLLPWLSRLKWLVLWLK
WNSVETVGRLKRPVLFISG
back to top

mRNA from alignment at H-elongata_contig135295:703..1595+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135295.2493.1 ID=mRNA_H-elongata_contig135295.2493.1|Name=mRNA_H-elongata_contig135295.2493.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=893bp|location=Sequence derived from alignment at H-elongata_contig135295:703..1595+ (Himanthalia elongata Himel1 dioecious)
ATGGTGTGGCGTCGTAGGTACGGAAAGAGCGAGGGGAATCCCACGGAGGA AGGTCTTCTGTTGGACGTGGAGGCAAGCCTGCGTGCGCTAAAAGAGAACC CCAAGTCCGGGGTAGATCCGAAGAAGCTCGTTCTGTTCGGGCGGTCCTTG GGCGGCGCGGTGGCCCTCGGTGCTACGGACCGATATCCCGAGCTGGTGAG TCACGATCGATTTCCTTACGGGGAAGAGTTGTGGTGGGAGTGGTGGTGGG AGCGATGTGAGGTGAGTTACAAGGAAGACCTCGTCGCGGTGAAGTGTTAC TGTAATGATATGGGGTGAGTTGCGATAGCGGATTTATGTTTGAGGGAAGT GGTACGATGTAAAATTGAACCTGGCGAATCACGGTCGAGGAAGCGTTACG ATTGAAGCAATATCATCACCGCCTAAGAATCGGTTGGATCAAGCAACCGG CCCCATCACGGCGATTCGTTGCCTTGTCTGCCTGCAACGATCTTCCTCAC CATGACTTGTGCCGCGTTCCATGCCGCCACGGTTAGGCTTCACATTCTAC ACAACGGCAGGCTGTCTACTGACAATCTCACGGGTTAACGCCACTAGTAA TCTGCTTAATATTTTCCCAGTCGCCACTACGTCATATACTTAGATCTTTC TCCGCCTTTTTGGGATGCCGCCGTATTTCCCGTATTTTTTGGGGGGTGCG TTGGTTCACGGGGGATCGGGGACGGCTTCAGATTCGCGCCGTGATTGTGG AAAACACGTTTCTCAGCGTGTCGCATATGGTGGACAAGCTCCTTCCCTGG CTATCGAGGTTGAAGTGGCTGGTGCTGTGGCTGAAGTGGAACAGCGTGGA GACGGTCGGGCGCCTTAAACGACCGGTGCTCTTTATTTCGGGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig135295:703..1595+

>mRNA_H-elongata_contig135295.2493.1 ID=mRNA_H-elongata_contig135295.2493.1|Name=mRNA_H-elongata_contig135295.2493.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig135295:703..1595+ (Himanthalia elongata Himel1 dioecious)
ATGGTGTGGCGTCGTAGGTACGGAAAGAGCGAGGGGAATCCCACGGAGGA
AGGTCTTCTGTTGGACGTGGAGGCAAGCCTGCGTGCGCTAAAAGAGAACC
CCAAGTCCGGGGTAGATCCGAAGAAGCTCGTTCTGTTCGGGCGGTCCTTG
GGCGGCGCGGTGGCCCTCGGTGCTACGGACCGATATCCCGAGCTGATGGT
GTGGCGTCGTAGGTACGGAAAGAGCGAGGGGAATCCCACGGAGGAAGGTC
TTCTGTTGGACGTGGAGGCAAGCCTGCGTGCGCTAAAAGAGAACCCCAAG
TCCGGGGTAGATCCGAAGAAGCTCGTTCTGTTCGGGCGGTCCTTGGGCGG
CGCGGTGGCCCTCGGTGCTACGGACCGATATCCCGAGCTGATTCGCGCCG
TGATTGTGGAAAACACGTTTCTCAGCGTGTCGCATATGGTGGACAAGCTC
CTTCCCTGGCTATCGAGGTTGAAGTGGCTGGTGCTGTGGCTGAAGTGGAA
CAGCGTGGAGACGGTCGGGCGCCTTAAACGACCGGTGCTCTTTATTTCGG
GTATTCGCGCCGTGATTGTGGAAAACACGTTTCTCAGCGTGTCGCATATG
GTGGACAAGCTCCTTCCCTGGCTATCGAGGTTGAAGTGGCTGGTGCTGTG
GCTGAAGTGGAACAGCGTGGAGACGGTCGGGCGCCTTAAACGACCGGTGC
TCTTTATTTCGGGT
back to top