mRNA_H-elongata_contig102856.249.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102856.249.1
Unique NamemRNA_H-elongata_contig102856.249.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102856.249.1 vs. uniprot
Match: D7FMF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF7_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 8.460e-22
Identity = 48/54 (88.89%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 LGSLIVHNATTTRYRLMATAREHYERELKQQAFLMLGSLEAFGNPVGLLRGMGQ 162
            L SLIVHN TTTR RL  TAREHYERELKQQAFLMLGSLEAFGNPVGL+RGMGQ
Sbjct:  335 LKSLIVHNTTTTRSRLTLTAREHYERELKQQAFLMLGSLEAFGNPVGLVRGMGQ 388
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BLAST of mRNA_H-elongata_contig102856.249.1 vs. uniprot
Match: A0A6H5KXT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT8_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 8.490e-22
Identity = 48/54 (88.89%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 LGSLIVHNATTTRYRLMATAREHYERELKQQAFLMLGSLEAFGNPVGLLRGMGQ 162
            L SLIVHN TTTR RL  TAREHYERELKQQAFLMLGSLEAFGNPVGL+RGMGQ
Sbjct:  688 LKSLIVHNTTTTRSRLTLTAREHYERELKQQAFLMLGSLEAFGNPVGLVRGMGQ 741
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BLAST of mRNA_H-elongata_contig102856.249.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.420e-9
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 LGSLIVHNATTTRYRLMATAREHYERELKQQAFLMLGSLEAFGNPVGLLRGMGQ 162
            L S I+HN T    +L A A  HY   +KQ   LMLG+LEAFGNPVGL RG+ Q
Sbjct: 5333 LASFIMHNETIATQQLGAIAAAHYLSTVKQHVLLMLGALEAFGNPVGLFRGVSQ 5386
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102856.249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMF7_ECTSI8.460e-2288.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXT8_9PHAE8.490e-2288.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C849_9STRA3.420e-955.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102856contigH-elongata_contig102856:700..879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue1.8e-18
Seed eggNOG ortholog2880.D7FMF7
KEGG koko:K19525
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAutophagy-related, C-terminal
Ec32 orthologEc-05_000900.1
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.8046708-CDS-H-elongata_contig102856:699..8791622929565.8046708-CDS-H-elongata_contig102856:699..879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102856 700..879 -
1691679072.875243-CDS-H-elongata_contig102856:699..8791691679072.875243-CDS-H-elongata_contig102856:699..879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102856 700..879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102856.249.1prot_H-elongata_contig102856.249.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102856 700..879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102856.249.1

>prot_H-elongata_contig102856.249.1 ID=prot_H-elongata_contig102856.249.1|Name=mRNA_H-elongata_contig102856.249.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
LGSLIVHNATTTRYRLMATAREHYERELKQQAFLMLGSLEAFGNPVGLLR
GMGQVCHFS*
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mRNA from alignment at H-elongata_contig102856:700..879-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102856.249.1 ID=mRNA_H-elongata_contig102856.249.1|Name=mRNA_H-elongata_contig102856.249.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig102856:700..879- (Himanthalia elongata Himel1 dioecious)
CTGGGGTCGCTGATCGTCCACAACGCAACGACGACGCGGTATCGCCTGAT
GGCTACCGCCCGCGAGCACTACGAGAGAGAGCTCAAGCAACAGGCGTTCT
TGATGCTCGGGAGCCTGGAGGCCTTCGGGAACCCCGTCGGCCTGCTCCGC
GGCATGGGGCAGGTGTGTCACTTCTCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig102856:700..879-

>mRNA_H-elongata_contig102856.249.1 ID=mRNA_H-elongata_contig102856.249.1|Name=mRNA_H-elongata_contig102856.249.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig102856:700..879- (Himanthalia elongata Himel1 dioecious)
CTGGGGTCGCTGATCGTCCACAACGCAACGACGACGCGGTATCGCCTGAT
GGCTACCGCCCGCGAGCACTACGAGAGAGAGCTCAAGCAACAGGCGTTCT
TGATGCTCGGGAGCCTGGAGGCCTTCGGGAACCCCGTCGGCCTGCTCCGC
GGCATGGGGCAGGTGTGTCACTTCTCATAACTGGGGTCGCTGATCGTCCA
CAACGCAACGACGACGCGGTATCGCCTGATGGCTACCGCCCGCGAGCACT
ACGAGAGAGAGCTCAAGCAACAGGCGTTCTTGATGCTCGGGAGCCTGGAG
GCCTTCGGGAACCCCGTCGGCCTGCTCCGCGGCATGGGGCAGGTGTGTCA
CTTCTCATAA
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