mRNA_H-elongata_contig134740.2457.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE) HSP 1 Score: 122 bits (307), Expect = 9.470e-32 Identity = 58/131 (44.27%), Postives = 85/131 (64.89%), Query Frame = 1
Query: 1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVGEI 390
E+N R++ A F + + +YD+ PL LK+R+L+A+V+ET+LY CV W+ + Y +R AHH FL RC+ W+K R D P+SY L+ A ES+E + RR+ FAGF+A M D RLPK ++GE+
Sbjct: 144 EINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERKDRPLSYAKALITAGCDESVEATVRKRRLCFAGFVARMRDERLPKIALLGEL 274
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE) HSP 1 Score: 113 bits (282), Expect = 6.050e-29 Identity = 53/131 (40.46%), Postives = 82/131 (62.60%), Query Frame = 1
Query: 1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVGEI 390
E+ R AW + + + +YD+ +LK+R+L+A+V+ET+LY C +WS HY + H FLTRC+ W K R+D P+SY L++A E+IE + RR+ FAGF+ M+D RLPK +++GE+
Sbjct: 10 EITSRSCRAWKCYRRKSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGEM 140
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5J747_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J747_9PHAE) HSP 1 Score: 106 bits (265), Expect = 3.780e-27 Identity = 49/110 (44.55%), Postives = 73/110 (66.36%), Query Frame = 1
Query: 58 VYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
+YD +LK+R+L+A+V+ET+LY C +WSP HY + H FLTRC+ W K R+D P+SY L++A E+IE + RR+ FAGF+ M+D+RLPK +++G
Sbjct: 1 MYDGRRANRQLKIRLLQAEVVETLLYGCASWSPTAEHYTKLNETHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLG 110
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE) HSP 1 Score: 111 bits (278), Expect = 4.030e-27 Identity = 52/129 (40.31%), Postives = 81/129 (62.79%), Query Frame = 1
Query: 1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
E+ RI AW + + + +YD+ +LK+R+L+A+V++T+LY C +WS HY + H FLTRC+ W K R+D P+SY L++A E+IE + RR+ FAGF+ M+D RLPK +++G
Sbjct: 67 EITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG 195
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE) HSP 1 Score: 111 bits (278), Expect = 6.180e-27 Identity = 52/129 (40.31%), Postives = 81/129 (62.79%), Query Frame = 1
Query: 1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
E+ RI AW + + + +YD+ +LK+R+L+A+V++T+LY C +WS HY + H FLTRC+ W K R+D P+SY L++A E+IE + RR+ FAGF+ M+D RLPK +++G
Sbjct: 97 EITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG 225
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5JCS2_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS2_9PHAE) HSP 1 Score: 111 bits (277), Expect = 7.500e-27 Identity = 52/129 (40.31%), Postives = 81/129 (62.79%), Query Frame = 1
Query: 1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
E+ R AW + + + +YD+ +LK+R+L+A+V+ET+LY C +WS HY + H FLTRC+ W K R+D P+SY L++A E+IE + RR+ FAGF+ M+D+RLPK +++G
Sbjct: 86 EITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLG 214
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5K5W0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W0_9PHAE) HSP 1 Score: 108 bits (269), Expect = 2.180e-26 Identity = 51/129 (39.53%), Postives = 80/129 (62.02%), Query Frame = 1
Query: 1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
E+ R AW + + + +YD+ +LK+R+L+A+V+E +LY C +WS HY + H FLTRC+ W K R+D P+SY L++A E+IE + RR+ FAGF+ M+D+RLPK +++G
Sbjct: 67 EITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVEHLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLG 195
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5K065_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K065_9PHAE) HSP 1 Score: 112 bits (280), Expect = 2.970e-26 Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 1
Query: 1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
E+ R AW + + + +YD+ +LK+R+L+A+V+ET+LY C +WS V HY + H FLTRC+ W K R+D P+SY L++A E+IE + RR+ FAGF+ M+D RLPK +++G
Sbjct: 599 EITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTVEHYTKLNGTHRQFLTRCIGWSKRQRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG 727
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5JTX2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX2_9PHAE) HSP 1 Score: 111 bits (277), Expect = 3.530e-26 Identity = 52/129 (40.31%), Postives = 80/129 (62.02%), Query Frame = 1
Query: 1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKARSE-SIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
E+ R AW + + +YD+ +LK+R+L+ V+ET+LY C +WS HY + H FLTRC+DW K R+D P+SY + L++A E +IE + RR+ FAGF+ M+D+RLPK +++G
Sbjct: 218 EITSRSCRAWKCYRRNRALMYDRRRANRQLKIRLLQVQVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIDWSKRKRSDRPLSYAEALIQAGCEQTIEATVRKRRLCFAGFVMRMEDSRLPKRILIG 346
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE) HSP 1 Score: 110 bits (276), Expect = 3.830e-26 Identity = 52/129 (40.31%), Postives = 80/129 (62.02%), Query Frame = 1
Query: 1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
E+ R AW + + + +YD+ +LK+R+L+A+V+ET+LY C +WS HY + H FLTRC+ W K R+D P+SY L++A E+IE + RR+ FAGF+ M+D RLPK +++G
Sbjct: 187 EITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG 315 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig134740.2457.1 >prot_H-elongata_contig134740.2457.1 ID=prot_H-elongata_contig134740.2457.1|Name=mRNA_H-elongata_contig134740.2457.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWback to top mRNA from alignment at H-elongata_contig134740:180..569+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig134740.2457.1 ID=mRNA_H-elongata_contig134740.2457.1|Name=mRNA_H-elongata_contig134740.2457.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at H-elongata_contig134740:180..569+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig134740:180..569+ >mRNA_H-elongata_contig134740.2457.1 ID=mRNA_H-elongata_contig134740.2457.1|Name=mRNA_H-elongata_contig134740.2457.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig134740:180..569+ (Himanthalia elongata Himel1 dioecious)back to top |