mRNA_H-elongata_contig134335.2436.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 6.950e-20 Identity = 60/156 (38.46%), Postives = 88/156 (56.41%), Query Frame = 1
Query: 379 KFHQVLGHPAQQITRNTARMGGVQLS-GIWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGL--KIGVIRTDGGGEWHGQFLSFLSKLEIKHESTPPYT 837
++H GH + + R TA GVQL+ G C+ CS S+ + V KST +RA + R+++DL G S+ N + ++ DDF+R+ V FLK+KSDA + D+ EG+ K+ + RTDGGGE+ GQF + IK E TPP+T
Sbjct: 424 EYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRT-EGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHT 578
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 1.790e-19 Identity = 58/153 (37.91%), Postives = 84/153 (54.90%), Query Frame = 1
Query: 385 HQVLGHPAQQITRNTARMGGVQLSG-IWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPE-GLKIGVIRTDGGGEWHGQFLSFLSKLEIKHESTPPYT 837
H GH +++ + TA+ GVQL+G C+ CS S+ + + KST+ RA + RLF++L G S+ N + ++ DD TR+ V FLK+KSDA + D+ A ++ V RTDGGGE+ GQF + IK E TPP T
Sbjct: 139 HNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNT 291
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 3.100e-18 Identity = 58/156 (37.18%), Postives = 87/156 (55.77%), Query Frame = 1
Query: 379 KFHQVLGHPAQQITRNTARMGGVQLS-GIWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGL--KIGVIRTDGGGEWHGQFLSFLSKLEIKHESTPPYT 837
++H G + + R TA GVQL+ G C+ CS S + V KST RA ++ R+++DL G S+ N + ++ DDF+R+ V FLK+KSDA L + D+ +G+ ++ + RTDGGGE+ GQF + IK E TPP+T
Sbjct: 588 EYHLAHGQARETLLRITAEQQGVQLTDGPLLPCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRT-KGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHT 742
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5KZI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI6_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 9.390e-18 Identity = 57/156 (36.54%), Postives = 87/156 (55.77%), Query Frame = 1
Query: 379 KFHQVLGHPAQQITRNTARMGGVQLS-GIWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGL--KIGVIRTDGGGEWHGQFLSFLSKLEIKHESTPPYT 837
++H GH + + R TA GVQL+ G C+ CS S+ + V KST RA ++ R+++DL G S+ N + ++ DDF+R+ V FLK+KSDA + D+ +G+ ++ V RTDGGGE+ GQF + K + TPP+T
Sbjct: 441 EYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRT-KGVPCEVYVARTDGGGEFQGQFAEVCRRHGNKQKFTPPHT 595
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5JF14_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF14_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 2.220e-17 Identity = 55/145 (37.93%), Postives = 81/145 (55.86%), Query Frame = 1
Query: 409 QQITRNTARMGGVQLSG-IWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPE-GLKIGVIRTDGGGEWHGQFLSFLSKLEIKHESTPPYT 837
+++ + TA+ GVQL+G C+ CS S+ + + KST+ RA + RLF+DL G S+ N + ++ DD TR+ V F+K+KSDA + D+ A ++ V RTDGGGE+ GQF + IK E TPP T
Sbjct: 3 EELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAAKNLFRLFLDLRGRMQFKSIGGNWYTLIIRDDCTRWTRVFFMKHKSDAAAAFERYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNT 147
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 5.210e-17 Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 1
Query: 379 KFHQVLGHPAQQITRNTARMGGVQLS-GIWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGLKIGVI--RTDGGGEWHGQFLSFLSKLEIKHESTPPYT 837
++H GH + + R TA GVQL+ G C+ CS S+ + V K T RA ++ R+++DL G S+ N + ++ DDF+R+ FLK+KSDA + D+ +G+ V RTDGGGE+ GQF + IK E TPP+T
Sbjct: 134 EYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKGTSTRAVKKLCRVYLDLEGKMKTRSIGGNWYKLIIRDDFSRWTRGFFLKHKSDAAIGFEKFLADYRT-KGIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFTPPHT 288
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5JGJ0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ0_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 2.130e-16 Identity = 54/153 (35.29%), Postives = 84/153 (54.90%), Query Frame = 1
Query: 379 KFHQVLGHPAQQITRNTARMGGVQLS-GIWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGL--KIGVIRTDGGGEWHGQFLSFLSKLEIKHESTP 828
++H GH + + R TA GVQL+ G C+ CS S+ + V KST RA ++ R+++DL G ++ + ++ DDF+R+ V FLK+KSDA + D+ +G+ ++ + RTDGGGE+ GQF + IK E TP
Sbjct: 137 EYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRNIGGIWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRT-KGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTP 288
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.020e-15 Identity = 51/153 (33.33%), Postives = 78/153 (50.98%), Query Frame = 1
Query: 382 FHQVLGHPAQQITRNTARMGGVQLS-GIWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGLKIGVIRTDGGGEWHGQFLSFLSKLEIKHESTPPYT 837
+H GH + + R TA GVQL+ G C+ CS S+ + V KST RA ++ R+++DL G S+ N + ++ DD +R+ V F + A + + + K+ + RTDGGGE+ GQF + IK E TPP+T
Sbjct: 343 YHPAHGHANETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDCSRWTCVFFFNHSDAAVGFEKSLADYRTKGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHT 495
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.130e-15 Identity = 54/155 (34.84%), Postives = 81/155 (52.26%), Query Frame = 1
Query: 379 KFHQVLGHPAQQITRNTARMGGVQLS-GIWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEG-LKIGVIRTDGGGEWHGQFLSFLSKLEIKHESTPPYT 837
++H GH + + R TA GVQL+ G C+ CS S+ + V KST RA R +++DL S+ + + ++ DDF+R+ FLK+KSDA + D+ ++ + RTDGGGE+ GQF + IK E TPP+T
Sbjct: 137 EYHLANGHAHETMLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVIRIFHVYLDLGRNMKTRSIGGSWYTLIIRDDFSRWTRDFFLKHKSDAAVGFEKFLADYRTKGAPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHT 291
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Match: A0A0A9XD75_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=4 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XD75_LYGHE) HSP 1 Score: 82.4 bits (202), Expect = 6.110e-14 Identity = 82/300 (27.33%), Postives = 135/300 (45.00%), Query Frame = 1
Query: 1 WANDSGATEHMTQDPAGLEDYTPEPAGD-RVESAGGTLFPVAGYGHLRLLVDQGNVNFTDSTRQLTLKHVAHVPNLGQKNMLSTKQLTQFFDAPMRVYPAAALIRPRRGDMPLFSRPLRPENGLLDIK----------------FHQVLGHPAQQITRNTARMG-GVQLSG-IWRTCVHCSESRARRYAVPKSTENRADRRAGRLFIDLSGPFHETSLERNRFVMLCIDDFTRFKIVRFLKYKSDATNVLRDIINDFLAPEGLKIGVIRTDGGGEWHGQ-FLSFLSKLEIKHESTPPYTS 840
W DS A+ H+T D + L + + GD + +A GT G G ++ +V ++T V +VP+ + +K + + + R + I + G + + ENG+ I +H+ +GH + ++M GV+ S + C C+ + R K +++RA L +DL GP S+ RF+ +DD +R+ V FLK+KSDA V +D GLKI +IRTDGG E+ Q F ++L+ L ++H+ T YTS
Sbjct: 61 WYLDSCASVHITNDKSCLSEIRND--GDMHITTANGTSLKSNGVGKAQV-----HVRLNGIADEITAHDVHYVPDASTNILSVSKIVNKGNEVTFRA--SGGRITDQHGSLIATAS---IENGIYKIDNRECAPVYCAKSSSALWHRRMGHLNRARMAQLSKMAVGVENSSPLQSVCEVCALGKQARLPF-KPSKHRAKNILDLLHLDLCGPMETASIGGKRFMFTIVDDCSRYTHVFFLKHKSDAFAVFKDFQTLVERQMGLKIKMIRTDGGTEFVNQAFKNYLADLGVRHQQTVRYTS 347 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134335.2436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig134335.2436.1 >prot_H-elongata_contig134335.2436.1 ID=prot_H-elongata_contig134335.2436.1|Name=mRNA_H-elongata_contig134335.2436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp MTQDPAGLEDYTPEPAGDRVESAGGTLFPVAGYGHLRLLVDQGNVNFTDSback to top mRNA from alignment at H-elongata_contig134335:534..1472- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig134335.2436.1 ID=mRNA_H-elongata_contig134335.2436.1|Name=mRNA_H-elongata_contig134335.2436.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=939bp|location=Sequence derived from alignment at H-elongata_contig134335:534..1472- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig134335:534..1472- >mRNA_H-elongata_contig134335.2436.1 ID=mRNA_H-elongata_contig134335.2436.1|Name=mRNA_H-elongata_contig134335.2436.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig134335:534..1472- (Himanthalia elongata Himel1 dioecious)back to top |