prot_H-elongata_contig13424.2429.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13424.2429.1
Unique Nameprot_H-elongata_contig13424.2429.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length55
Homology
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BLAST of mRNA_H-elongata_contig13424.2429.1 vs. uniprot
Match: D7FKD9_ECTSI (MutS protein homolog 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD9_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.590e-14
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0 
Query:    2 LKPFYDIGAINARQDGVEALMQVENAEVCKRLRYQLGKSHDMARILLRIKKAS 54
            LKP +DI AI+ RQDGVE LMQ ENAE+C+RLR QL KS+ M RI++RIKK +
Sbjct:  116 LKPLHDIAAISVRQDGVEVLMQAENAEICRRLRSQLSKSYGMTRIIMRIKKVA 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13424.2429.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKD9_ECTSI2.590e-1466.04MutS protein homolog 5 n=1 Tax=Ectocarpus siliculo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007696DNA mismatch repair protein MutS, corePFAMPF05192MutS_IIIcoord: 2..52
e-value: 1.8E-7
score: 31.6
NoneNo IPR availableGENE3D1.10.1420.10coord: 1..54
e-value: 6.6E-8
score: 35.1
IPR036187DNA mismatch repair protein MutS, core domain superfamilySUPERFAMILY48334DNA repair protein MutS, domain IIIcoord: 2..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13424contigH-elongata_contig13424:3179..3612 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13424.2429.1mRNA_H-elongata_contig13424.2429.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13424 3179..3612 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13424.2429.1 ID=prot_H-elongata_contig13424.2429.1|Name=mRNA_H-elongata_contig13424.2429.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
FLKPFYDIGAINARQDGVEALMQVENAEVCKRLRYQLGKSHDMARILLRI
KKAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007696DNA_mismatch_repair_MutS_core
IPR036187DNA_mismatch_repair_MutS_sf