prot_H-elongata_contig13424.2428.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13424.2428.1
Unique Nameprot_H-elongata_contig13424.2428.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length162
Homology
BLAST of mRNA_H-elongata_contig13424.2428.1 vs. uniprot
Match: D7FKD9_ECTSI (MutS protein homolog 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD9_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 8.020e-45
Identity = 88/158 (55.70%), Postives = 116/158 (73.42%), Query Frame = 0
Query:    2 DWCRLIQSIESTLDVRDSLVVLKTRAEASTASKHGVLEDAGYHSQAFLARLVEDIDPVVLRCCLDGLSDVIDSAASAEDRELVIQRGFDDNLDSKKNLLADLPDILRAI---VLEENPLLDELSVEYVPQIGFLTTLDKRFGELVPPCFSFAFSQARS 156
            DWC+LI SIES LDVRD L +++T A A+      V     + +++FLARL++DIDPVVLR CL+GL  VID  ASA+D+++VI+ GFD+ LD+ +  L DLPDIL+ I   VL EN +L+ELSVEYVPQIGF TTL +RFG+L P  F+FAF+Q  +
Sbjct:  173 DWCKLITSIESALDVRDGLALMRTSAGAA------VTVGGRFGNESFLARLLDDIDPVVLRKCLEGLCTVIDPVASAQDKDVVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNENSVLEELSVEYVPQIGFFTTLHERFGDLAPDDFTFAFAQGET 324          
BLAST of mRNA_H-elongata_contig13424.2428.1 vs. uniprot
Match: A0A7S2L9S1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L9S1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.930e-5
Identity = 39/115 (33.91%), Postives = 59/115 (51.30%), Query Frame = 0
Query:   35 HGVLEDAG-------YHSQAFLARLVEDIDPVVLRCCLDGLSDVIDSAASAEDRE-LVIQRGFDDNLDSKKNLLADLPDILRAI---VLEENPLLDELSVEYVPQIGFLTTLDKR 138
            H  +ED G       Y S  F+  L++     VLR   + ++ VID   +AE ++  VI  GF + LDS K     L + L  +   VL ++  L  L V ++PQ+GFL ++DKR
Sbjct:  323 HQDMEDMGRGTQQQQYPSVTFIDELLQQCHVPVLRNLRERMASVIDEEVTAEVKDHCVINFGFHEELDSAKETFETLDETLSEVGRQVLAKHEELISLKVVFLPQVGFLVSIDKR 437          
BLAST of mRNA_H-elongata_contig13424.2428.1 vs. uniprot
Match: A0A0P1B652_PLAHL (Muts protein homolog 5 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B652_PLAHL)

HSP 1 Score: 52.8 bits (125), Expect = 5.330e-5
Identity = 42/155 (27.10%), Postives = 70/155 (45.16%), Query Frame = 0
Query:    2 DWCRLIQSIESTLDVRDSLVVLKTRAEASTASKHGVLEDAGYHSQAFLARLVEDIDPVVLRCCLDGLSDVIDSAASAEDRELVIQRGFDDNLDSKKNLLADLPDILRAI---VLEENPLLDELSVEYVPQIGFLTTLDKRFGELVPPCFSFAFSQ 153
            DWCR   SI S L+ R  +  L+    +S  S    +  +G    + +  L               L +VID   S ++  +VI+ G  + LD+ +    DL ++L  +   V E NP+L  ++V+Y+PQ+G++   D        P F F F +
Sbjct:  307 DWCRFATSIGSFLEARSLIGSLRGDTASSLPSVFSKV--SGEQGASHINNL---------------LVNVIDFEESQQETTVVIRSGVSEALDAARERYEDLDNVLTEVAFQVKEANPILSSITVQYIPQVGYVICCDS---PTTLPEFVFQFQE 441          
BLAST of mRNA_H-elongata_contig13424.2428.1 vs. uniprot
Match: A0A1V2LBQ4_CYBFA (MutS protein 5 n=2 Tax=Cyberlindnera fabianii TaxID=36022 RepID=A0A1V2LBQ4_CYBFA)

HSP 1 Score: 52.4 bits (124), Expect = 6.970e-5
Identity = 31/107 (28.97%), Postives = 55/107 (51.40%), Query Frame = 0
Query:   43 YHSQAFLARLVEDIDPVVLRCCLDGLSDVIDSAASAEDRELVIQRGFDDNLDSKKNLLADLPDILRAIVLEENPLLDE-----LSVEYVPQIGFLTTLDKRFGELVP 144
            +H      RL+ D+D    +  L  +S +ID  +S E+  + I+ GFD  LD  +     L  +L ++  E   +  +     L+V Y+PQ+G+L ++D  F ++VP
Sbjct:  156 FHRTVLGQRLLNDVDTKAFKELLIDISALIDFESSEENNRVYIKDGFDPPLDDMRRTYTGLEQVLESLAAELFQVYHQFPEEALNVAYIPQLGYLISIDISFIQVVP 262          
BLAST of mRNA_H-elongata_contig13424.2428.1 vs. uniprot
Match: G8ZRG2_TORDC (Uncharacterized protein n=1 Tax=Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) TaxID=1076872 RepID=G8ZRG2_TORDC)

HSP 1 Score: 52.4 bits (124), Expect = 7.300e-5
Identity = 32/112 (28.57%), Postives = 57/112 (50.89%), Query Frame = 0
Query:   50 ARLVEDIDPVVLRCCLDGLSDVIDSAASAEDRELVIQRGFDDNLDSKKNLLADLPDILRAIVLEENPLL-----------------DELSVEYVPQIGFLTTLDKRFGELVP 144
            ++L + ++P+ L+  +D + ++ID   S E + +VI  G D+NLD  K L  +L +IL  +      +L                 D ++  Y+PQ+G+L TLD    E++P
Sbjct:  358 SKLGDRVNPLALQGLIDQVENIIDIETSKETKLVVINDGIDENLDKYKKLYNNLENILSDVARNAERVLVQLIERQRGVSAQIEIKDYVNAVYIPQLGYLVTLDVLIEEVLP 469          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13424.2428.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FKD9_ECTSI8.020e-4555.70MutS protein homolog 5 n=1 Tax=Ectocarpus siliculo... [more]
A0A7S2L9S1_9STRA4.930e-533.91Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A0P1B652_PLAHL5.330e-527.10Muts protein homolog 5 n=1 Tax=Plasmopara halstedi... [more]
A0A1V2LBQ4_CYBFA6.970e-528.97MutS protein 5 n=2 Tax=Cyberlindnera fabianii TaxI... [more]
G8ZRG2_TORDC7.300e-528.57Uncharacterized protein n=1 Tax=Torulaspora delbru... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036187DNA mismatch repair protein MutS, core domain superfamilySUPERFAMILY48334DNA repair protein MutS, domain IIIcoord: 44..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13424contigH-elongata_contig13424:1143..2913 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13424.2428.1mRNA_H-elongata_contig13424.2428.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13424 1143..2928 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13424.2428.1 ID=prot_H-elongata_contig13424.2428.1|Name=mRNA_H-elongata_contig13424.2428.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
MDWCRLIQSIESTLDVRDSLVVLKTRAEASTASKHGVLEDAGYHSQAFLA
RLVEDIDPVVLRCCLDGLSDVIDSAASAEDRELVIQRGFDDNLDSKKNLL
ADLPDILRAIVLEENPLLDELSVEYVPQIGFLTTLDKRFGELVPPCFSFA
FSQARSHDPIT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036187DNA_mismatch_repair_MutS_sf