mRNA_H-elongata_contig13424.2427.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13424.2427.1
Unique NamemRNA_H-elongata_contig13424.2427.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13424.2427.1 vs. uniprot
Match: D7FKD9_ECTSI (MutS protein homolog 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD9_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 3.970e-21
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 3 
Query:  255 QAKIMRALEEALLEREAALHAAAAATAELDAAMSLASVASDFGFVRPEVVEDNVIIIKNGRHPLQ 449
            QAKIMR LE+AL+  E ALHAAA+  AELDAA++LASVA DFGFVRPEVVEDNVI+IKNGRHPLQ
Sbjct:  350 QAKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQ 414
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BLAST of mRNA_H-elongata_contig13424.2427.1 vs. uniprot
Match: A0A1X7UDR7_AMPQE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UDR7_AMPQE)

HSP 1 Score: 61.6 bits (148), Expect = 3.230e-8
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 3 
Query:  252 AQAKIMRALEEALLEREAALHAAAAATAELDAAMSLASVASDFGFVRPEVVEDNVIIIKNGRHPLQ 449
            A+  +M  L+  L+E   AL +    T ELD  +S++ +A +  FV+PE+ EDNVI IKNGRHPLQ
Sbjct:  513 AETAMMHRLQSVLMEHSGALISVIECTTELDCLVSMSKLAKEHNFVKPELTEDNVIYIKNGRHPLQ 578
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BLAST of mRNA_H-elongata_contig13424.2427.1 vs. uniprot
Match: V4AGJ6_LOTGI (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AGJ6_LOTGI)

HSP 1 Score: 61.2 bits (147), Expect = 4.390e-8
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 3 
Query:  255 QAKIMRALEEALLEREAALHAAAAATAELDAAMSLASVASDFGFVRPEVVEDNVIIIKNGRHPLQ 449
            +  IM  L+  +LE    L+     TAELD  MSL++ A +FG+++PE+VEDN+I ++ GRHP+Q
Sbjct:  494 ETNIMHRLQNTILEHSKVLNDVMEYTAELDCLMSLSTCAREFGYIKPEMVEDNIIDVEGGRHPIQ 558
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BLAST of mRNA_H-elongata_contig13424.2427.1 vs. uniprot
Match: A0A812CKN8_SEPPH (MSH5 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812CKN8_SEPPH)

HSP 1 Score: 57.8 bits (138), Expect = 6.200e-7
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 3 
Query:  264 IMRALEEALLEREAALHAAAAATAELDAAMSLASVASDFGFVRPEVVEDNVIIIKNGRHPLQ 449
            IM  L++ +LE  A L      TAELD  M+ A  A +FG+V+P + E+NVI IKNGRHPLQ
Sbjct:   88 IMHRLQDTVLEHSAVLSHVMEHTAELDCLMAFAQSAREFGYVQPILNENNVIEIKNGRHPLQ 149
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BLAST of mRNA_H-elongata_contig13424.2427.1 vs. uniprot
Match: W7TMA2_9STRA (Mismatch repair protein 5 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMA2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.320e-6
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 3 
Query:  264 IMRALEEALLEREAALHAAAAATAELDAAMSLASVASDFGFVRPEVVEDNVIIIKNGRHPLQ 449
            ++R L E +L+ E AL  A  A AELD  M+ A +A    +VRP V E+ V+++K+GRHPLQ
Sbjct:  541 LLRQLAEEILKEETALAEAVRACAELDVLMAFAQLAGGLAWVRPMVTEERVVVVKDGRHPLQ 602
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BLAST of mRNA_H-elongata_contig13424.2427.1 vs. uniprot
Match: A0A4D9D1J2_9STRA (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1J2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.710e-6
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 3 
Query:  264 IMRALEEALLEREAALHAAAAATAELDAAMSLASVASDFGFVRPEVVEDNVIIIKNGRHPLQ 449
            ++R L E +L+ E AL  A  A AELD  M+ A +A    +VRP V E+ V+++K+GRHPLQ
Sbjct:  244 LLRQLAEEILKEEIALTEAVRACAELDVLMAFAQLAGGLAWVRPMVTEERVVVVKDGRHPLQ 305
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BLAST of mRNA_H-elongata_contig13424.2427.1 vs. uniprot
Match: A0A0K1PAY7_9DELT (DNA mismatch repair protein MutS n=2 Tax=Vulgatibacter incomptus TaxID=1391653 RepID=A0A0K1PAY7_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 3.290e-6
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3 
Query:  255 QAKIMRALEEALLEREAALHAAAAATAELDAAMSLASVASDFGFVRPEVVEDNVIIIKNGRHPL 446
            ++K+   L   +LER AA+ AAA A A  DA +SLA VA++ G+VRPEV E +V+ I  GRHP+
Sbjct:  540 ESKLFEELRGRILERAAAIKAAAGAIAVGDALLSLARVAAELGYVRPEVDEGDVLEIVEGRHPV 603
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BLAST of mRNA_H-elongata_contig13424.2427.1 vs. uniprot
Match: D8R9G5_SELML (DNA_MISMATCH_REPAIR_2 domain-containing protein (Fragment) n=6 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R9G5_SELML)

HSP 1 Score: 55.5 bits (132), Expect = 4.170e-6
Identity = 28/62 (45.16%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:  264 IMRALEEALLEREAALHAAAAATAELDAAMSLASVASDFGFVRPEVVEDNVIIIKNGRHPLQ 449
            I++ LE  + + E A+  +A  TA+LD  +S+A  A ++ + RP +VED+++IIKNGRHPLQ
Sbjct:  212 ILKELESKVQKYEPAVRYSADLTAQLDCLVSMAISAGEYNYNRPRLVEDDILIIKNGRHPLQ 273
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BLAST of mRNA_H-elongata_contig13424.2427.1 vs. uniprot
Match: D8SEG8_SELML (DNA_MISMATCH_REPAIR_2 domain-containing protein (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SEG8_SELML)

HSP 1 Score: 55.5 bits (132), Expect = 4.170e-6
Identity = 28/62 (45.16%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:  264 IMRALEEALLEREAALHAAAAATAELDAAMSLASVASDFGFVRPEVVEDNVIIIKNGRHPLQ 449
            I++ LE  + + E A+  +A  TA+LD  +S+A  A ++ + RP +VED+++IIKNGRHPLQ
Sbjct:  212 ILKELESKVQKYEPAVRYSADLTAQLDCLVSMAISAGEYNYNRPRLVEDDILIIKNGRHPLQ 273
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BLAST of mRNA_H-elongata_contig13424.2427.1 vs. uniprot
Match: A0A165TT55_9APHY (Uncharacterized protein n=1 Tax=Daedalea quercina L-15889 TaxID=1314783 RepID=A0A165TT55_9APHY)

HSP 1 Score: 55.5 bits (132), Expect = 4.510e-6
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:  261 KIMRALEEALLEREAALHAAAAATAELDAAMSLASVASDFGFVRPEVVEDNVIIIKNGRHPLQ 449
            +I++AL E +L    A+  A    AELD  +S A  ++   F+RP +VEDN+I IK GRHPLQ
Sbjct:  554 EIVQALSERILHHAEAMQHACDVCAELDCLLSFAEASATSNFIRPRMVEDNIIDIKQGRHPLQ 616
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13424.2427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKD9_ECTSI3.970e-2180.00MutS protein homolog 5 n=1 Tax=Ectocarpus siliculo... [more]
A0A1X7UDR7_AMPQE3.230e-846.97DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
V4AGJ6_LOTGI4.390e-844.62DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A812CKN8_SEPPH6.200e-751.61MSH5 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0... [more]
W7TMA2_9STRA1.320e-646.77Mismatch repair protein 5 n=1 Tax=Nannochloropsis ... [more]
A0A4D9D1J2_9STRA1.710e-646.77DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A0K1PAY7_9DELT3.290e-650.00DNA mismatch repair protein MutS n=2 Tax=Vulgatiba... [more]
D8R9G5_SELML4.170e-645.16DNA_MISMATCH_REPAIR_2 domain-containing protein (F... [more]
D8SEG8_SELML4.170e-645.16DNA_MISMATCH_REPAIR_2 domain-containing protein (F... [more]
A0A165TT55_9APHY4.510e-646.03Uncharacterized protein n=1 Tax=Daedalea quercina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13424contigH-elongata_contig13424:142..824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog2880.D7FKD9
Preferred nameMSH5
KEGG koko:K08741
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000710,GO:0000712,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0007276,GO:0007292,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0010777,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030983,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0033554,GO:0034641,GO:0035825,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0048609,GO:0050896,GO:0051026,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051704,GO:0051716,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.chiasma assembly
EggNOG OGsCOG0249@1,KOG0221@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size449
Cds size183
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13424.2427.1prot_H-elongata_contig13424.2427.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13424 142..558 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.38675-CDS-H-elongata_contig13424:141..1921622929797.38675-CDS-H-elongata_contig13424:141..192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 142..192 -
1691679161.2899168-CDS-H-elongata_contig13424:141..1921691679161.2899168-CDS-H-elongata_contig13424:141..192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 142..192 -
1622929797.4028108-CDS-H-elongata_contig13424:426..5581622929797.4028108-CDS-H-elongata_contig13424:426..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 427..558 -
1691679161.3001478-CDS-H-elongata_contig13424:426..5581691679161.3001478-CDS-H-elongata_contig13424:426..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 427..558 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.4201295-UTR-H-elongata_contig13424:558..8241622929797.4201295-UTR-H-elongata_contig13424:558..824Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13424 559..824 -
1691679161.307686-UTR-H-elongata_contig13424:558..8241691679161.307686-UTR-H-elongata_contig13424:558..824Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13424 559..824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13424.2427.1

>prot_H-elongata_contig13424.2427.1 ID=prot_H-elongata_contig13424.2427.1|Name=mRNA_H-elongata_contig13424.2427.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MRALEEALLEREAALHAAAAATAELDAAMSLASVASDFGFVRPEVVEDNV
IIIKNGRHPLQ
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mRNA from alignment at H-elongata_contig13424:142..824-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13424.2427.1 ID=mRNA_H-elongata_contig13424.2427.1|Name=mRNA_H-elongata_contig13424.2427.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=683bp|location=Sequence derived from alignment at H-elongata_contig13424:142..824- (Himanthalia elongata Himel1 dioecious)
GGTGACGCGGTGTACTACAAAAACCCACGAATGTACGAGATGGATGACGG
CATCGGAGACATTCAGGCCAAGATCGCGGACGACCAGGCATGAAGTTTGA
GACACACGCGCAGTATTGTCTCCCCGGGCGTATCGTCTCTCGGGGGTATC
AGGCACCGCCTGATAAGCCAGAACACTGTTATAGGGGCGGTGATTTTACG
CCGAAGTCAGACGCGACGATGAGTTGACAATCAACGCGCGACCCGCCCTT
CGCGCAGGCCAAAATCATGCGCGCGCTGGAAGAAGCACTACTGGAGCGAG
AGGCTGCGCTCCACGCGGCGGCTGCAGCTACCGCCGAGCTCGATGCCGCC
ATGTCCCTCGCCTCGGTTGCGTCCGATTTCGGCTTCGTCAGGCCAGAGGT
GCAGCGATAAATCTGGCTGCGATCGCTCTTGGAGCGGTCCATAGTAATCC
TACCTTGGCGAAAGTGTAAGCATGGTGGTCGGGGTGTAAAAGAGTACGCT
ACGAGTTACTCGAGTGGATGCTGACGCAACTCGGCAACATCGTACTTATC
TATACGATAGACATCGACTCATCTTTATGGCAATTAAAAAAACCTCCAGA
AGAAACCGAGCCAACCCTCGTATTTATTTTAGGTGGTTGAAGACAATGTA
ATCATCATCAAGAACGGCCGGCATCCCTTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig13424:142..824-

>mRNA_H-elongata_contig13424.2427.1 ID=mRNA_H-elongata_contig13424.2427.1|Name=mRNA_H-elongata_contig13424.2427.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig13424:142..824- (Himanthalia elongata Himel1 dioecious)
ATGCGCGCGCTGGAAGAAGCACTACTGGAGCGAGAGGCTGCGCTCCACGC
GGCGGCTGCAGCTACCGCCGAGCTCGATGCCGCCATGTCCCTCGCCTCGG
TTGCGTCCGATTTCGGCTTCGTCAGGCCAGAGATGCGCGCGCTGGAAGAA
GCACTACTGGAGCGAGAGGCTGCGCTCCACGCGGCGGCTGCAGCTACCGC
CGAGCTCGATGCCGCCATGTCCCTCGCCTCGGTTGCGTCCGATTTCGGCT
TCGTCAGGCCAGAGGTGGTTGAAGACAATGTAATCATCATCAAGAACGGC
CGGCATCCCTTGCAGGTGGTTGAAGACAATGTAATCATCATCAAGAACGG
CCGGCATCCCTTGCAG
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