mRNA_H-elongata_contig134190.2425.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134190.2425.1
Unique NamemRNA_H-elongata_contig134190.2425.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig134190.2425.1 vs. uniprot
Match: UPI00165228C0 (uncharacterized protein LOC118478942 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00165228C0)

HSP 1 Score: 67.0 bits (162), Expect = 5.000e-12
Identity = 34/83 (40.96%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:   13 MDDTRLPKCVMFGEIMEGAGWVGGQEKEWMRCLIEDLKAFGINANQWAIAAQDEGGWRKTAEKGAELLMKNCIAAEKVRTGLR 261
            M D+RLPK +M+GE++ G   VGGQ+K +  CL   LK  GI  + W + AQD   WR    KGA+      IA  K +  +R
Sbjct:    1 MADSRLPKQLMYGELLHGKRSVGGQKKRFKDCLKISLKELGILNDSWEMLAQDRPSWRCKLTKGAKAAEAKRIAEAKQKHNVR 83
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BLAST of mRNA_H-elongata_contig134190.2425.1 vs. uniprot
Match: A0A7M3PXV5_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PXV5_SPIER)

HSP 1 Score: 67.0 bits (162), Expect = 9.860e-11
Identity = 35/93 (37.63%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:    7 VLMDDTRLPKCVMFGEIMEGAGWVGGQEKEWMRCLIEDLKAFGINANQWAIAAQDEGGWRKTAEKGAELLMKNCIAAEKVRTGLRHALLPTIS 285
            V MDD RLPK +++G++  G+   GGQ + +   L   LK   IN   W   A D   WR+T + GA +   N IAA KV+   R + L  +S
Sbjct:  426 VRMDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKSSLKCLQINPTNWEELALDRPTWRRTLKTGAAIYEANRIAAAKVKCEARKSQLRPVS 518
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BLAST of mRNA_H-elongata_contig134190.2425.1 vs. uniprot
Match: A0A6P4ZXC7_BRABE (protocadherin Fat 4-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZXC7_BRABE)

HSP 1 Score: 66.2 bits (160), Expect = 1.930e-10
Identity = 36/81 (44.44%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:    7 VLMDDTRLPKCVMFGEIMEGAGWVGGQEKEWMRCLIEDLKAFGINANQWAIAAQDEGGWRKTAEKGAELLMKNCIAAEKVR 249
            V M DTRLPK +++ E++EG   VGGQ+K +   L   LK+F I+ + W  AAQ+   WR     GA L  K  IA E VR
Sbjct:  303 VRMPDTRLPKRLLYSELVEGKRSVGGQKKRFKDTLKTTLKSFKIDTSTWESAAQNRAAWRSHISSGATLYEKTRIA-EAVR 382
[Close]
BLAST of mRNA_H-elongata_contig134190.2425.1 vs. uniprot
Match: A0A7M3PRY6_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PRY6_SPIER)

HSP 1 Score: 65.9 bits (159), Expect = 2.430e-10
Identity = 34/98 (34.69%), Postives = 51/98 (52.04%), Query Frame = 1 
Query:    7 VLMDDTRLPKCVMFGEIMEGAGWVGGQEKEWMRCLIEDLKAFGINANQWAIAAQDEGGWRKTAEKGAELLMKNCIAAEKVRTGLRHALLPTISERDGE 300
            V MDD RLPK +++G++  G+   GGQ + +   L   LK   IN  +W   A D   WR+T +  A +   N IAA KV+   R + L ++   D +
Sbjct:  157 VRMDDERLPKRLIYGDVATGSRCQGGQIRRYKNTLKSSLKRLQINPTKWEELALDRPTWRRTVKTSAAIHEANRIAAAKVKREARKSQLRSLRNADSQ 254
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BLAST of mRNA_H-elongata_contig134190.2425.1 vs. uniprot
Match: A0A654HMC6_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HMC6_9CEST)

HSP 1 Score: 65.5 bits (158), Expect = 2.980e-10
Identity = 38/119 (31.93%), Postives = 56/119 (47.06%), Query Frame = 1 
Query:    7 VLMDDTRLPKCVMFGEIMEGAGWVGGQEKEWMRCLIEDLKAFGINANQWAIAAQDEGGWRKTAEKGAELLMKNCIAAEKVRTGLRHALL------------------PTISERDGEDQE 309
            V MDD RLPK +++G+++ G+   GGQ + +   L   LK   +N   W   A D   WR+T + GA +   N IAA KV+   R + +                  PT S+   EDQ+
Sbjct:   10 VRMDDERLPKRLLYGDVVTGSRRQGGQIRRYKDTLKSSLKRLQLNPTNWEELALDRPTWRRTVKTGAAIYEANHIAAAKVKREARKSQVQPAAVSHITNPDTTADTTPTASDSSDEDQD 128
[Close]
BLAST of mRNA_H-elongata_contig134190.2425.1 vs. uniprot
Match: A0A654HW91_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HW91_9CEST)

HSP 1 Score: 65.5 bits (158), Expect = 3.510e-10
Identity = 34/98 (34.69%), Postives = 49/98 (50.00%), Query Frame = 1 
Query:    7 VLMDDTRLPKCVMFGEIMEGAGWVGGQEKEWMRCLIEDLKAFGINANQWAIAAQDEGGWRKTAEKGAELLMKNCIAAEKVRTGLRHALLPTISERDGE 300
            V MDD RLPK +++G++  G+   G Q + +   L   LK   IN   W   A D   WR+T + GA +   N IAA KV+   R + L  +   D +
Sbjct:  757 VRMDDERLPKRLIYGDVATGSRRQGSQIRRYKDTLKSSLKRLQINPTNWEEIAHDRPTWRRTVKTGAAIYEANRIAAAKVKREARKSQLRPVRNADAQ 854
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BLAST of mRNA_H-elongata_contig134190.2425.1 vs. uniprot
Match: A0A6H5JMA1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.820e-10
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   13 MDDTRLPKCVMFGEIMEGAGWVGGQEKEWMRCLIEDLKAFGIN----ANQWAIAAQDEGGWRKTAEKGAELLMK 222
            M+D RLPK ++ GE+  GAG+ GGQE +W+  L EDL AFG+       +W  +A+D+  W    E GA   M+
Sbjct:  144 MEDNRLPKRMLLGEMAGGAGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMR 217
[Close]
BLAST of mRNA_H-elongata_contig134190.2425.1 vs. uniprot
Match: A0A654GTZ3_9CEST (C2H2-type domain-containing protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GTZ3_9CEST)

HSP 1 Score: 64.7 bits (156), Expect = 6.320e-10
Identity = 34/98 (34.69%), Postives = 49/98 (50.00%), Query Frame = 1 
Query:    7 VLMDDTRLPKCVMFGEIMEGAGWVGGQEKEWMRCLIEDLKAFGINANQWAIAAQDEGGWRKTAEKGAELLMKNCIAAEKVRTGLRHALLPTISERDGE 300
            V MDD RLPK +++G++  G+   GGQ + +   L   LK   I    W   A D   WR+T + GA +   N IAA KV+   R + L  +   D +
Sbjct:  423 VRMDDERLPKRLLYGDVATGSRRQGGQIRRYNDTLKSSLKRLQIKPTNWEELALDRPTWRRTVKTGAAIYEANRIAAAKVKREARKSQLRPVRNADAQ 520
[Close]
BLAST of mRNA_H-elongata_contig134190.2425.1 vs. uniprot
Match: A0A6H5K956_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K956_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.150e-9
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   13 MDDTRLPKCVMFGEIMEGAGWVGGQEKEWMRCLIEDLKAFGIN----ANQWAIAAQDEGGWRKTAEKGAELLMK 222
            M+D RLPK V+ G +  G G+ GGQE+EW+  L +DL AF +     A +W  +A+D   W    E GA  LM+
Sbjct:  112 MEDNRLPKHVLLGAMAGGVGYRGGQEREWVSRLGDDLVAFNMGDEKEAGKWNESAKDPEVWYNKVEDGAAWLMR 185
[Close]
BLAST of mRNA_H-elongata_contig134190.2425.1 vs. uniprot
Match: A0A6H5JHK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.970e-9
Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:   13 MDDTRLPKCVMFGEIMEGAGWVGGQEKEWMRCLIEDLKAFGIN----ANQWAIAAQDEGGWRKTAEKGAELLMK 222
            M+D+RLPK ++ GE+  G G+ GGQE +W+  L EDL AF +       +W  +A+D   W    E GA   M+
Sbjct:  121 MEDSRLPKRMLLGEMARGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDGAAWFMR 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134190.2425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00165228C05.000e-1240.96uncharacterized protein LOC118478942 n=1 Tax=Aplys... [more]
A0A7M3PXV5_SPIER9.860e-1137.63Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A6P4ZXC7_BRABE1.930e-1044.44protocadherin Fat 4-like n=1 Tax=Branchiostoma bel... [more]
A0A7M3PRY6_SPIER2.430e-1034.69Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A654HMC6_9CEST2.980e-1031.93Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A654HW91_9CEST3.510e-1034.69Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A6H5JMA1_9PHAE3.820e-1041.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A654GTZ3_9CEST6.320e-1034.69C2H2-type domain-containing protein n=1 Tax=Sparga... [more]
A0A6H5K956_9PHAE4.150e-941.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHK9_9PHAE4.970e-939.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134190contigH-elongata_contig134190:865..1179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.1
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog6500.XP_005092354.1
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.2572896-CDS-H-elongata_contig134190:864..11671622929797.2572896-CDS-H-elongata_contig134190:864..1167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134190 865..1167 -
1691679161.2449265-CDS-H-elongata_contig134190:864..11671691679161.2449265-CDS-H-elongata_contig134190:864..1167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134190 865..1167 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.2732863-UTR-H-elongata_contig134190:1167..11791622929797.2732863-UTR-H-elongata_contig134190:1167..1179Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134190 1168..1179 -
1691679161.2630203-UTR-H-elongata_contig134190:1167..11791691679161.2630203-UTR-H-elongata_contig134190:1167..1179Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134190 1168..1179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134190.2425.1prot_H-elongata_contig134190.2425.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134190 865..1167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134190.2425.1

>prot_H-elongata_contig134190.2425.1 ID=prot_H-elongata_contig134190.2425.1|Name=mRNA_H-elongata_contig134190.2425.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MDDTRLPKCVMFGEIMEGAGWVGGQEKEWMRCLIEDLKAFGINANQWAIA
AQDEGGWRKTAEKGAELLMKNCIAAEKVRTGLRHALLPTISERDGEDQEG
*
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mRNA from alignment at H-elongata_contig134190:865..1179-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134190.2425.1 ID=mRNA_H-elongata_contig134190.2425.1|Name=mRNA_H-elongata_contig134190.2425.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=315bp|location=Sequence derived from alignment at H-elongata_contig134190:865..1179- (Himanthalia elongata Himel1 dioecious)
AATAGAGTATTAATGGATGACACGAGACTGCCGAAGTGCGTGATGTTCGG
AGAAATCATGGAGGGCGCGGGCTGGGTGGGAGGGCAGGAAAAAGAGTGGA
TGAGGTGTCTCATTGAAGACCTCAAAGCTTTCGGTATCAACGCCAATCAG
TGGGCGATTGCAGCCCAGGACGAGGGGGGGTGGCGCAAGACGGCGGAAAA
AGGGGCGGAACTTTTGATGAAGAACTGTATCGCTGCAGAGAAAGTCAGGA
CTGGACTACGGCATGCACTACTACCTACCATATCCGAACGTGACGGGGAG
GACCAAGAAGGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig134190:865..1179-

>mRNA_H-elongata_contig134190.2425.1 ID=mRNA_H-elongata_contig134190.2425.1|Name=mRNA_H-elongata_contig134190.2425.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig134190:865..1179- (Himanthalia elongata Himel1 dioecious)
ATGGATGACACGAGACTGCCGAAGTGCGTGATGTTCGGAGAAATCATGGA
GGGCGCGGGCTGGGTGGGAGGGCAGGAAAAAGAGTGGATGAGGTGTCTCA
TTGAAGACCTCAAAGCTTTCGGTATCAACGCCAATCAGTGGGCGATTGCA
GCCCAGGACGAGGGGGGGTGGCGCAAGACGGCGGAAAAAGGGGCGGAACT
TTTGATGAAGAACTGTATCGCTGCAGAGAAAGTCAGGACTGGACTACGGC
ATGCACTACTACCTACCATATCCGAACGTGACGGGGAGGACCAAGAAGGA
TAGATGGATGACACGAGACTGCCGAAGTGCGTGATGTTCGGAGAAATCAT
GGAGGGCGCGGGCTGGGTGGGAGGGCAGGAAAAAGAGTGGATGAGGTGTC
TCATTGAAGACCTCAAAGCTTTCGGTATCAACGCCAATCAGTGGGCGATT
GCAGCCCAGGACGAGGGGGGGTGGCGCAAGACGGCGGAAAAAGGGGCGGA
ACTTTTGATGAAGAACTGTATCGCTGCAGAGAAAGTCAGGACTGGACTAC
GGCATGCACTACTACCTACCATATCCGAACGTGACGGGGAGGACCAAGAA
GGATAG
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