mRNA_H-elongata_contig134169.2424.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134169.2424.1
Unique NamemRNA_H-elongata_contig134169.2424.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A438GL78_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GL78_VITVI)

HSP 1 Score: 75.1 bits (183), Expect = 1.340e-13
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   34 AEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSAPI 312
            AE  P S +  M  +    W+ AM +E+  ++ +  + +++ LP G K IG +WV   K++S GNI+I K R V+KGF Q+EG++Y +T +PI
Sbjct:  147 AENDPESFSQAMSCKESKLWYNAMKDEMSSMRCNDVWDLVE-LPNGVKTIGCKWVFKTKKDSSGNIEIYKARLVTKGFTQKEGIDYTETFSPI 238
[Close]
BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.350e-13
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:   28 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 306
            S+ E  P++   VM  +YK  W  AM  E+ G  ++GTF  +  LPEG KAIGS+WVLS+K    G I   K R V++GF Q  G+++  +S+
Sbjct:  102 SDVEAVPMTYKDVMCSKYKVFWEAAMKNEIDGHDKTGTFTKVKELPEGRKAIGSKWVLSWKTSEKGLIVDFKARMVARGFSQIPGIDFHHSSS 194
[Close]
BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.510e-13
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:   28 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 306
            S+ E  P++   VM  +YK  W  AM +E+ G  ++GTF  +  LPEG KAIGS+WV S+K    G I   K R V++GF Q  G+++   S+
Sbjct:  116 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSS 208
[Close]
BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.680e-13
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:   28 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 306
            S+ E  P++   VM  +YK  W  AM +E+ G  ++GTF  +  LPEG KAIGS+WV S+K    G I   K R V++GF Q  G+++  +S+
Sbjct:  102 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSS 194
[Close]
BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5JXX7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX7_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.830e-13
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:   28 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 306
            S+ E  P++   VM  +YK  W  AM +E+ G  ++GTF  +  LPEG KAIGS+WV S+K    G I   K R V++GF Q  G+++  +S+
Sbjct:  302 SDVEAVPMTYRDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFYHSSS 394
[Close]
BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.880e-13
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:   28 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 306
            S+ E  P++   VM  +YK  W  AM +E+ G  ++GTF  +  LPEG KAIGS+WV S+K +  G I   K R V++GF +  G+++  +S+
Sbjct:   10 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHHSSS 102
[Close]
BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.540e-13
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:   28 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 306
            S+ E  P++   VM  +YK  W  AM +E+ G  ++GTF  +  LPEG KAIGS+WV S+K    G I   K R V++GF Q  G+++ ++S+
Sbjct:  452 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSS 544
[Close]
BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5JJW3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW3_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.810e-13
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:   28 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 306
            S+ E  P++   V+  +YK  W  AM EE+ G  ++GTF  +  LPEG KAIGS+WV S+K    G I   K R V++GF Q  G+++  +S+
Sbjct:   41 SDVEAVPMTYKDVICSKYKVFWEAAMEEEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSS 133
[Close]
BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.130e-13
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:   28 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 306
            S+ E  P++   VM  +YK  W  AM +E+ G  ++GTF  +  LPEG KAIGS+WV S+K    G I   K R V++GF Q  G+++ ++S+
Sbjct:   10 SDVEAVPMTYKDVMCSKYKVFWETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSS 102
[Close]
BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.540e-13
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:   28 SEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDGLPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSA 306
            S+ E  P++   VM  +YK  W  AM +E+ G  ++GTF  +  LPEG KAIGS+WV S+K    G I   K R V++GF Q  G+++  +S+
Sbjct:  353 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSS 445
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134169.2424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438GL78_VITVI1.340e-1338.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JRB0_9PHAE1.350e-1341.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K282_9PHAE1.510e-1340.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE1.680e-1340.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXX7_9PHAE1.830e-1340.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K236_9PHAE1.880e-1339.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE2.540e-1340.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJW3_9PHAE2.810e-1340.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE3.130e-1340.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE3.540e-1340.86Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134169contigH-elongata_contig134169:242..553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue5.5e-12
Seed eggNOG ortholog164328.Phyra80289
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHNV@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.1748495-CDS-H-elongata_contig134169:241..5441622929797.1748495-CDS-H-elongata_contig134169:241..544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134169 242..544 -
1691679161.2250166-CDS-H-elongata_contig134169:241..5441691679161.2250166-CDS-H-elongata_contig134169:241..544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134169 242..544 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.1971538-UTR-H-elongata_contig134169:544..5531622929797.1971538-UTR-H-elongata_contig134169:544..553Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134169 545..553 -
1691679161.2345395-UTR-H-elongata_contig134169:544..5531691679161.2345395-UTR-H-elongata_contig134169:544..553Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134169 545..553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134169.2424.1prot_H-elongata_contig134169.2424.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134169 242..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134169.2424.1

>prot_H-elongata_contig134169.2424.1 ID=prot_H-elongata_contig134169.2424.1|Name=mRNA_H-elongata_contig134169.2424.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MPSGPVSEAEIPPVSVAGVMKFRYKGAWFWAMNEELKGLKESGTFKVLDG
LPEGEKAIGSRWVLSYKEESDGNIKIPKVRRVSKGFMQREGVNYLQTSAP
I
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mRNA from alignment at H-elongata_contig134169:242..553-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134169.2424.1 ID=mRNA_H-elongata_contig134169.2424.1|Name=mRNA_H-elongata_contig134169.2424.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig134169:242..553- (Himanthalia elongata Himel1 dioecious)
GAATTTGAAATGCCCTCTGGTCCCGTGAGTGAGGCTGAGATTCCACCTGT
GTCGGTTGCGGGTGTGATGAAATTTCGATACAAGGGAGCATGGTTTTGGG
CCATGAACGAAGAACTGAAGGGTCTAAAAGAGTCGGGTACTTTCAAGGTG
TTGGATGGACTGCCTGAGGGTGAAAAGGCTATTGGCTCACGATGGGTGTT
ATCATACAAGGAAGAGAGTGATGGAAACATAAAGATTCCGAAGGTTAGAC
GTGTTAGTAAGGGATTTATGCAGAGGGAAGGTGTAAACTACCTCCAGACA
TCCGCACCCATA
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Coding sequence (CDS) from alignment at H-elongata_contig134169:242..553-

>mRNA_H-elongata_contig134169.2424.1 ID=mRNA_H-elongata_contig134169.2424.1|Name=mRNA_H-elongata_contig134169.2424.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig134169:242..553- (Himanthalia elongata Himel1 dioecious)
ATGCCCTCTGGTCCCGTGAGTGAGGCTGAGATTCCACCTGTGTCGGTTGC
GGGTGTGATGAAATTTCGATACAAGGGAGCATGGTTTTGGGCCATGAACG
AAGAACTGAAGGGTCTAAAAGAGTCGGGTACTTTCAAGGTGTTGGATGGA
CTGCCTGAGGGTGAAAAGGCTATTGGCTCACGATGGGTGTTATCATACAA
GGAAGAGAGTGATGGAAACATAAAGATTCCGAAGGTTAGACGTGTTAGTA
AGGGATTTATGCAGAGGGAAGGTGTAAACTACCTCCAGACATCCGCACCC
ATAATGCCCTCTGGTCCCGTGAGTGAGGCTGAGATTCCACCTGTGTCGGT
TGCGGGTGTGATGAAATTTCGATACAAGGGAGCATGGTTTTGGGCCATGA
ACGAAGAACTGAAGGGTCTAAAAGAGTCGGGTACTTTCAAGGTGTTGGAT
GGACTGCCTGAGGGTGAAAAGGCTATTGGCTCACGATGGGTGTTATCATA
CAAGGAAGAGAGTGATGGAAACATAAAGATTCCGAAGGTTAGACGTGTTA
GTAAGGGATTTATGCAGAGGGAAGGTGTAAACTACCTCCAGACATCCGCA
CCCATA
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