prot_H-elongata_contig133718.2393.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig133718.2393.1
Unique Nameprot_H-elongata_contig133718.2393.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length163
Homology
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BLAST of mRNA_H-elongata_contig133718.2393.1 vs. uniprot
Match: D7G6T8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6T8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.110e-10
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0 
Query:  125 LPLLGRLFGQAANLFQVGALFGTIPTLLAGLVCSYWAWQ 163
            LP+LGRL G +ANLFQVG L GTIPTLLAG+VC YWA+Q
Sbjct:    4 LPVLGRLLGNSANLFQVGVLLGTIPTLLAGVVCFYWAYQ 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133718.2393.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6T8_ECTSI3.110e-1076.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..137
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 163..163
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..21
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 138..162
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.586
NoneNo IPR availableTMHMMTMhelixcoord: 140..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133718contigH-elongata_contig133718:199..687 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133718.2393.1mRNA_H-elongata_contig133718.2393.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig133718 193..687 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig133718.2393.1 ID=prot_H-elongata_contig133718.2393.1|Name=mRNA_H-elongata_contig133718.2393.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
MRGIRLVVILCTVSKAAGLRAILLKAPIKLKNNCKQSAQARVHDDVPKRV
RKYPPAQASTQRDGSLAYSPGFQRIASIRRVFNPSTNKHGPEVVPNQRAR
RKRTWIIIDVSDGEKRLSQSAAAMLPLLGRLFGQAANLFQVGALFGTIPT
LLAGLVCSYWAWQ
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