mRNA_H-elongata_contig133677.2391.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133677.2391.1
Unique NamemRNA_H-elongata_contig133677.2391.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig133677.2391.1 vs. uniprot
Match: D8LN64_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN64_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.070e-24
Identity = 44/58 (75.86%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    7 CAMLRSVPHYPAAVKEFSWRNGFFWDISQKARQKGEDDPCLLHSKLLRQVADEQGISL 180
            CA  RSV +YPAAVKEFSWRNGFFWDIS+KAR++G +DPC LH+KLLRQVA+EQG++L
Sbjct:  258 CAYSRSVANYPAAVKEFSWRNGFFWDISEKARKEGTEDPCPLHTKLLRQVANEQGLTL 315
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BLAST of mRNA_H-elongata_contig133677.2391.1 vs. uniprot
Match: A0A0G4FX93_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FX93_VITBC)

HSP 1 Score: 75.9 bits (185), Expect = 4.340e-15
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 CAMLRSVPHYPAAVKEFSWRNGFFWDISQKARQKGEDDPCLLHSKLLRQV 156
            C+  RSV H+P AVKEF WRNGFFWD+S++A   G  DPC +H++LL+QV
Sbjct:  208 CSYTRSVSHFPTAVKEFEWRNGFFWDLSKQAMDGGRADPCPIHTRLLQQV 257
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BLAST of mRNA_H-elongata_contig133677.2391.1 vs. uniprot
Match: A0A4D9D7H8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7H8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.620e-15
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 CAMLRSVPHYPAAVKEFSWRNGFFWDISQKARQKGEDDPCLLHSKLLRQV 156
            CA  RSV H+P AVKEF WRNGFFW++S++A  +GE DPC  HS +L+QV
Sbjct:  183 CAYARSVAHFPTAVKEFPWRNGFFWNLSEEAVGRGEADPCPSHSAMLKQV 232
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BLAST of mRNA_H-elongata_contig133677.2391.1 vs. uniprot
Match: A0A176W243_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176W243_MARPO)

HSP 1 Score: 75.1 bits (183), Expect = 9.840e-15
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 CAMLRSVPHYPAAVKEFSWRNGFFWDISQKARQKGEDDPCLLHSKLLRQV 156
            CA  RSV HYP AVKEF WRNG+F+DISQ+A   GE DPC LH+  L++V
Sbjct:  224 CAYARSVSHYPTAVKEFEWRNGWFYDISQRALSNGETDPCPLHTAWLKEV 273
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BLAST of mRNA_H-elongata_contig133677.2391.1 vs. uniprot
Match: A0A2R6WZ89_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WZ89_MARPO)

HSP 1 Score: 75.1 bits (183), Expect = 1.870e-14
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 CAMLRSVPHYPAAVKEFSWRNGFFWDISQKARQKGEDDPCLLHSKLLRQV 156
            CA  RSV HYP AVKEF WRNG+F+DISQ+A   GE DPC LH+  L++V
Sbjct:  308 CAYARSVSHYPTAVKEFEWRNGWFYDISQRALSNGETDPCPLHTAWLKEV 357
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BLAST of mRNA_H-elongata_contig133677.2391.1 vs. uniprot
Match: W7U5Z5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5Z5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.440e-14
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 CAMLRSVPHYPAAVKEFSWRNGFFWDISQKARQKGEDDPCLLHSKLLRQV 156
            CA  RSV H+P AVKEF WRNGFFW +S++A  +GE DPC  HS +L+QV
Sbjct:  251 CAYARSVAHFPTAVKEFPWRNGFFWKLSEEAVGRGEADPCPSHSAMLKQV 300
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BLAST of mRNA_H-elongata_contig133677.2391.1 vs. uniprot
Match: A0A1D1XHC9_9ARAE (UPF0753 protein Noc_1251 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XHC9_9ARAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.750e-13
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 CAMLRSVPHYPAAVKEFSWRNGFFWDISQKARQKGEDDPCLLHSKLLRQV 156
            CA  R+V H+P AVKEF WRNG+F+ ++QKA ++G+ DPC LHS  L+++
Sbjct:   81 CAYSRAVAHFPTAVKEFKWRNGWFYSLTQKALEEGKPDPCPLHSAWLKEL 130
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BLAST of mRNA_H-elongata_contig133677.2391.1 vs. uniprot
Match: I3SIY8_LOTJA (Uncharacterized protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SIY8_LOTJA)

HSP 1 Score: 67.8 bits (164), Expect = 3.520e-13
Identity = 26/50 (52.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 CAMLRSVPHYPAAVKEFSWRNGFFWDISQKARQKGEDDPCLLHSKLLRQV 156
            CA  R+V H+P AVKEF WRNG+F+ +S+KA  +G+ DPC LH++ L+++
Sbjct:   62 CAYSRAVAHFPTAVKEFKWRNGWFYSLSEKATAQGKQDPCPLHTQWLKEL 111
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BLAST of mRNA_H-elongata_contig133677.2391.1 vs. uniprot
Match: A0A6I9TDC0_SESIN (uncharacterized protein LOC105165352 isoform X2 n=3 Tax=Lamiales TaxID=4143 RepID=A0A6I9TDC0_SESIN)

HSP 1 Score: 69.7 bits (169), Expect = 4.230e-13
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 CAMLRSVPHYPAAVKEFSWRNGFFWDISQKARQKGEDDPCLLHSKLLRQV 156
            CA  R+V H+P AVKEF WRNG+F+ +SQKA  +G+DDPC LH+  L+++
Sbjct:  156 CAYSRAVAHFPTAVKEFKWRNGWFYSLSQKAIAQGKDDPCPLHTAWLKEL 205
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BLAST of mRNA_H-elongata_contig133677.2391.1 vs. uniprot
Match: A0A6P6GJ38_ZIZJJ (uncharacterized protein LOC107429622 isoform X2 n=2 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P6GJ38_ZIZJJ)

HSP 1 Score: 68.9 bits (167), Expect = 8.200e-13
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 CAMLRSVPHYPAAVKEFSWRNGFFWDISQKARQKGEDDPCLLHSKLLRQV 156
            CA  RSV H+P AVKEF WRNG+F+ +SQKA  +G+ DPC LH++ L+++
Sbjct:  155 CAYSRSVAHFPTAVKEFKWRNGWFYSLSQKAIAEGKPDPCPLHTEWLKEL 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133677.2391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN64_ECTSI4.070e-2475.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4FX93_VITBC4.340e-1560.00Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A4D9D7H8_9STRA5.620e-1562.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A176W243_MARPO9.840e-1564.00Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A2R6WZ89_MARPO1.870e-1464.00Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
W7U5Z5_9STRA2.440e-1462.00Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A1D1XHC9_9ARAE2.750e-1354.00UPF0753 protein Noc_1251 (Fragment) n=1 Tax=Anthur... [more]
I3SIY8_LOTJA3.520e-1352.00Uncharacterized protein n=1 Tax=Lotus japonicus Ta... [more]
A0A6I9TDC0_SESIN4.230e-1356.00uncharacterized protein LOC105165352 isoform X2 n=... [more]
A0A6P6GJ38_ZIZJJ8.200e-1356.00uncharacterized protein LOC107429622 isoform X2 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133677contigH-elongata_contig133677:980..1162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue2.8e-19
Seed eggNOG ortholog2880.D8LN64
EggNOG OGs28JH7@1,2QRWE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_003670.1
Exons1
Model size183
Cds size183
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929794.0208037-CDS-H-elongata_contig133677:979..11621622929794.0208037-CDS-H-elongata_contig133677:979..1162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133677 980..1162 -
1691679160.0178094-CDS-H-elongata_contig133677:979..11621691679160.0178094-CDS-H-elongata_contig133677:979..1162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133677 980..1162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133677.2391.1prot_H-elongata_contig133677.2391.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133677 980..1162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133677.2391.1

>prot_H-elongata_contig133677.2391.1 ID=prot_H-elongata_contig133677.2391.1|Name=mRNA_H-elongata_contig133677.2391.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MDCAMLRSVPHYPAAVKEFSWRNGFFWDISQKARQKGEDDPCLLHSKLLR
QVADEQGISL*
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mRNA from alignment at H-elongata_contig133677:980..1162-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133677.2391.1 ID=mRNA_H-elongata_contig133677.2391.1|Name=mRNA_H-elongata_contig133677.2391.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig133677:980..1162- (Himanthalia elongata Himel1 dioecious)
ATGGACTGTGCGATGCTCAGGTCGGTGCCGCACTACCCCGCGGCCGTGAA
AGAATTCTCGTGGCGCAACGGTTTTTTCTGGGACATTTCTCAAAAGGCGA
GACAGAAAGGGGAAGACGATCCTTGCCTCCTCCACAGCAAGCTCTTGCGG
CAGGTCGCGGATGAGCAGGGCATATCTCTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig133677:980..1162-

>mRNA_H-elongata_contig133677.2391.1 ID=mRNA_H-elongata_contig133677.2391.1|Name=mRNA_H-elongata_contig133677.2391.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig133677:980..1162- (Himanthalia elongata Himel1 dioecious)
ATGGACTGTGCGATGCTCAGGTCGGTGCCGCACTACCCCGCGGCCGTGAA
AGAATTCTCGTGGCGCAACGGTTTTTTCTGGGACATTTCTCAAAAGGCGA
GACAGAAAGGGGAAGACGATCCTTGCCTCCTCCACAGCAAGCTCTTGCGG
CAGGTCGCGGATGAGCAGGGCATATCTCTTTGAATGGACTGTGCGATGCT
CAGGTCGGTGCCGCACTACCCCGCGGCCGTGAAAGAATTCTCGTGGCGCA
ACGGTTTTTTCTGGGACATTTCTCAAAAGGCGAGACAGAAAGGGGAAGAC
GATCCTTGCCTCCTCCACAGCAAGCTCTTGCGGCAGGTCGCGGATGAGCA
GGGCATATCTCTTTGA
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