mRNA_H-elongata_contig133642.2390.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133642.2390.1
Unique NamemRNA_H-elongata_contig133642.2390.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133642.2390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133642contigH-elongata_contig133642:789..1646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size859
Cds size858
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929793.9795256-CDS-H-elongata_contig133642:788..16461622929793.9795256-CDS-H-elongata_contig133642:788..1646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133642 789..1646 +
1691679160.0084696-CDS-H-elongata_contig133642:788..16461691679160.0084696-CDS-H-elongata_contig133642:788..1646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133642 789..1646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133642.2390.1prot_H-elongata_contig133642.2390.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133642 789..1646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133642.2390.1

>prot_H-elongata_contig133642.2390.1 ID=prot_H-elongata_contig133642.2390.1|Name=mRNA_H-elongata_contig133642.2390.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp
MRRIRKPTAAEQYAASVNLMHGRSTTAPRCRSREVSDARGVAVAAVRTMN
HRLPRLQPPLSVKSAHSTATHAEVSEQGTAMATVSTARSTRYAGAGTARV
SNHRFARLPPSSPHTAARTGSSGSGGGSARLPSSMFLRSMPPTVGCAGER
ACGDSDGNRFERGNIGRRVDAQHRAAVDSAVQEAMEEQVAQSTLDDDSLL
SLFSASQRPQHSGEATRVRRRSLVRMHTMGDSVDSTAPLLRSQSASRFGG
RGRATLERSPSLSSMSRARAAIRGHDIPRTGIHDDE
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mRNA from alignment at H-elongata_contig133642:789..1646+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133642.2390.1 ID=mRNA_H-elongata_contig133642.2390.1|Name=mRNA_H-elongata_contig133642.2390.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=858bp|location=Sequence derived from alignment at H-elongata_contig133642:789..1646+ (Himanthalia elongata Himel1 dioecious)
ATGCGAAGAATTCGAAAGCCCACGGCGGCAGAGCAATACGCGGCGAGCGT
TAACCTGATGCACGGAAGGTCTACCACAGCTCCTCGCTGTCGCAGCCGGG
AGGTCAGCGATGCAAGAGGGGTAGCGGTGGCGGCCGTGCGGACAATGAAT
CATCGTTTGCCCCGCTTGCAGCCTCCATTGTCCGTGAAATCCGCACACTC
GACCGCAACCCATGCTGAGGTCAGCGAGCAGGGTACCGCAATGGCAACAG
TATCGACAGCACGATCTACAAGGTATGCGGGGGCAGGGACAGCTCGGGTT
TCAAACCACAGGTTTGCCCGCTTGCCGCCGTCATCGCCGCACACCGCAGC
GCGCACAGGCAGCAGCGGAAGTGGTGGTGGCAGCGCACGCTTGCCGTCCT
CCATGTTTCTGAGATCAATGCCGCCAACAGTAGGGTGCGCCGGTGAGCGA
GCGTGTGGCGACAGTGACGGTAACCGATTCGAGCGCGGGAATATAGGGAG
GCGTGTAGACGCGCAGCACCGTGCGGCCGTCGACAGCGCGGTACAGGAAG
CGATGGAAGAGCAAGTCGCGCAATCGACTCTTGACGACGACAGTCTCTTG
TCCCTTTTTAGCGCTTCTCAACGTCCGCAACATTCTGGGGAAGCAACGCG
CGTGCGGCGGCGGAGCCTCGTGCGGATGCACACAATGGGAGACAGCGTTG
ATTCGACAGCGCCGCTGCTGCGGTCTCAAAGCGCGAGTCGCTTCGGCGGC
AGGGGTCGAGCAACGCTGGAGAGATCACCAAGTTTGAGTTCGATGTCAAG
GGCAAGAGCGGCCATAAGGGGGCACGATATCCCGCGCACCGGTATCCACG
ACGACGAG
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Coding sequence (CDS) from alignment at H-elongata_contig133642:789..1646+

>mRNA_H-elongata_contig133642.2390.1 ID=mRNA_H-elongata_contig133642.2390.1|Name=mRNA_H-elongata_contig133642.2390.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig133642:789..1646+ (Himanthalia elongata Himel1 dioecious)
ATGCGAAGAATTCGAAAGCCCACGGCGGCAGAGCAATACGCGGCGAGCGT
TAACCTGATGCACGGAAGGTCTACCACAGCTCCTCGCTGTCGCAGCCGGG
AGGTCAGCGATGCAAGAGGGGTAGCGGTGGCGGCCGTGCGGACAATGAAT
CATCGTTTGCCCCGCTTGCAGCCTCCATTGTCCGTGAAATCCGCACACTC
GACCGCAACCCATGCTGAGGTCAGCGAGCAGGGTACCGCAATGGCAACAG
TATCGACAGCACGATCTACAAGGTATGCGGGGGCAGGGACAGCTCGGGTT
TCAAACCACAGGTTTGCCCGCTTGCCGCCGTCATCGCCGCACACCGCAGC
GCGCACAGGCAGCAGCGGAAGTGGTGGTGGCAGCGCACGCTTGCCGTCCT
CCATGTTTCTGAGATCAATGCCGCCAACAGTAGGGTGCGCCGGTGAGCGA
GCGTGTGGCGACAGTGACGGTAACCGATTCGAGCGCGGGAATATAGGGAG
GCGTGTAGACGCGCAGCACCGTGCGGCCGTCGACAGCGCGGTACAGGAAG
CGATGGAAGAGCAAGTCGCGCAATCGACTCTTGACGACGACAGTCTCTTG
TCCCTTTTTAGCGCTTCTCAACGTCCGCAACATTCTGGGGAAGCAACGCG
CGTGCGGCGGCGGAGCCTCGTGCGGATGCACACAATGGGAGACAGCGTTG
ATTCGACAGCGCCGCTGCTGCGGTCTCAAAGCGCGAGTCGCTTCGGCGGC
AGGGGTCGAGCAACGCTGGAGAGATCACCAAGTTTGAGTTCGATGTCAAG
GGCAAGAGCGGCCATAAGGGGGCACGATATCCCGCGCACCGGTATCCACG
ACGACGAGATGCGAAGAATTCGAAAGCCCACGGCGGCAGAGCAATACGCG
GCGAGCGTTAACCTGATGCACGGAAGGTCTACCACAGCTCCTCGCTGTCG
CAGCCGGGAGGTCAGCGATGCAAGAGGGGTAGCGGTGGCGGCCGTGCGGA
CAATGAATCATCGTTTGCCCCGCTTGCAGCCTCCATTGTCCGTGAAATCC
GCACACTCGACCGCAACCCATGCTGAGGTCAGCGAGCAGGGTACCGCAAT
GGCAACAGTATCGACAGCACGATCTACAAGGTATGCGGGGGCAGGGACAG
CTCGGGTTTCAAACCACAGGTTTGCCCGCTTGCCGCCGTCATCGCCGCAC
ACCGCAGCGCGCACAGGCAGCAGCGGAAGTGGTGGTGGCAGCGCACGCTT
GCCGTCCTCCATGTTTCTGAGATCAATGCCGCCAACAGTAGGGTGCGCCG
GTGAGCGAGCGTGTGGCGACAGTGACGGTAACCGATTCGAGCGCGGGAAT
ATAGGGAGGCGTGTAGACGCGCAGCACCGTGCGGCCGTCGACAGCGCGGT
ACAGGAAGCGATGGAAGAGCAAGTCGCGCAATCGACTCTTGACGACGACA
GTCTCTTGTCCCTTTTTAGCGCTTCTCAACGTCCGCAACATTCTGGGGAA
GCAACGCGCGTGCGGCGGCGGAGCCTCGTGCGGATGCACACAATGGGAGA
CAGCGTTGATTCGACAGCGCCGCTGCTGCGGTCTCAAAGCGCGAGTCGCT
TCGGCGGCAGGGGTCGAGCAACGCTGGAGAGATCACCAAGTTTGAGTTCG
ATGTCAAGGGCAAGAGCGGCCATAAGGGGGCACGATATCCCGCGCACCGG
TATCCACGACGACGAG
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